Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0000981

Physical Location & Seq

Genomic Coordinates Forward (+)

25819173 .. 25823485

Gene Structure 4313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAAGCTTCAGGATATCATGGGACTCTTACACAGTCCCACACACATTTTTTGTTCCTCAGTCCAGGTACCTCCATTTTCAGTTCGAAAGGTGTTCACACAGATATTCTCCTTCATCAATGTTCAGTTATTCAACAGCCTTCTATTACGACGTGAGTGCTGTTCGTTTAGTAATGGGGAATATGTAAAAGCTGGTTTGGCTGAGTTGGAGCATTGGTGCTATGAAGCAACAGTCTTCTCACCTTCAACTTTGGTGTTTGCGTTGGGCGATGTGAGATGGGGACTCGATGATGGCGGTGGTTCGGATCCGATCGGGGGTACCTTGGATTTTGTCTCTGTTTTGGTGGCCGTGATTGATACCCGTGGATGGGGTCTCACGCCTCCGGATGGGAGGCTAGGCGGCGGATTCTGGATTGAGCTTTTTGATCATGCGGGATTCCCGGTTGGTGCGCCGGCGAGGCAAAGCTCCTCGCTCAAGTCGAAGGATGCGGTGGATGGGCCTCTTAGGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000146 GO:0000166 GO:0000331 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003774 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0006928 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008144 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015629 GO:0016043 GO:0016049 GO:0016459 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022414 GO:0030029 GO:0030036 GO:0030048 GO:0030154 GO:0030554 GO:0030898 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033275 GO:0035639 GO:0036094 GO:0040007 GO:0042623 GO:0042641 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043531 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051015 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051656 GO:0051704 GO:0060560 GO:0070252 GO:0071840 GO:0097159 GO:0097367 GO:0097435 GO:0097708 GO:0140027 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DIL IQ Myosin_N Myosin_head

Protein Analysis

170

Amino Acids

18.46

Weight (kDa)

5.46

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIL	PF01843	30 - 78	3.8e-15	DIL domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000981)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0486651 RchiOBHm_Chr4g0407841 RchiOBHm_Chr6g0312071 RchiOBHm_Chr6g0312081 RchiOBHm_Chr7g0199951
rosa_laevigata	RLG00000000594 RLG00000001567 RLG00000001832 RLG00000004637 RLG00000004640 RLG00000004833 RLG00000006679 RLG00000007158 RLG00000008694 RLG00000009075 RLG00000011512 RLG00000012673 RLG00000015109 RLG00000016150 RLG00000017316 RLG00000019776 RLG00000020284 RLG00000020334 RLG00000021424 RLG00000021718 RLG00000022244 RLG00000023069 RLG00000023643 RLG00000025130 RLG00000027919 RLG00000028123 RLG00000029202 RLG00000030087 RLG00000035075 RLG00000035197 RLG00000035409 RLG00000035824
rosa_multiflora	Rmu_sc0002613.1_g000004 Rmu_ssc0000041.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019920 Rroxscaffold_2G00115510 Rroxscaffold_3G00246460 Rroxscaffold_3G00264120 Rroxscaffold_5G00344800 Rroxscaffold_6G00403360 Rroxscaffold_7G00204700
rosa_rugosa	Rorug02G0168200 Rorug05G0236500 Rorug05G0287700 Rorug05G0492800 Rorug06G0461500 Rorug06G0495600
rosa_samantha	Rh1CG201100 Rh1DG303400 Rh2BG472700 Rh3AG275800 Rh5BG139300 Rh5CG230200 Rh5DG114300 Rh6AG509200 Rh6BG248700 Rh6CG280300 Rh6DG402300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	67, 317
AccB1I	GGYRCC	2 cut(s)	67, 317
AccIII	TCCGGA	1 cut(s)	382
AciI	CCGC	5 cut(s)	294, 399, 402, 431, 488
AclWI	GGATC	2 cut(s)	299, 312
AcoI	YGGCCR	1 cut(s)	345
AfaI	GTAC	2 cut(s)	69, 319
AfiI	CCNNNNNNNGG	4 cut(s)	314, 366, 367, 386
AgsI	TTSAA	2 cut(s)	133, 246
AjiI	CACGTC	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	4 cut(s)	7, 191, 418, 465
AluI	AGCT	4 cut(s)	7, 191, 418, 465
Alw26I	GTCTC	2 cut(s)	337, 377
AlwI	GGATC	2 cut(s)	299, 312
Aor13HI	TCCGGA	1 cut(s)	382
AoxI	GGCC	3 cut(s)	345, 497, 506
Asp718I	GGTACC	2 cut(s)	67, 317
AspLEI	GCGC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	497
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	1 cut(s)	231
AsuII	TTCGAA	1 cut(s)	85
BamHI	GGATCC	1 cut(s)	304
BanI	GGYRCC	2 cut(s)	67, 317
BbsI	GAAGAC	1 cut(s)	226
BccI	CCATC	5 cut(s)	270, 284, 360, 380, 488
BceAI	ACGGC	1 cut(s)	332
BcgI	CGANNNNNNTGC	2 cut(s)	138, 172
BciT130I	CCWGG	1 cut(s)	65
BclI	TGATCA	1 cut(s)	424
BcnI	CCSGG	1 cut(s)	440
BcoDI	GTCTC	2 cut(s)	337, 377
BfaI	CTAG	1 cut(s)	395
BglI	GCCNNNNNGGC	2 cut(s)	457, 505
BisI	GCNGC	1 cut(s)	400
BlsI	GCNGC	1 cut(s)	401
Bme1390I	CCNGG	2 cut(s)	65, 440
BmgBI	CACGTC	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	497
BmiI	GGNNCC	3 cut(s)	69, 306, 319
BmrFI	CCNGG	2 cut(s)	65, 440
BmsI	GCATC	1 cut(s)	475
BpiI	GAAGAC	1 cut(s)	226
Bpu14I	TTCGAA	1 cut(s)	85
BpuEI	CTTGAG	1 cut(s)	458
BpuMI	CCSGG	1 cut(s)	440
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	2 cut(s)	321, 361
BsaWI	WCCGGW	1 cut(s)	382
BsaXI	ACNNNNNCTCC	2 cut(s)	200, 230
Bsc4I	CCNNNNNNNGG	4 cut(s)	314, 366, 367, 386
Bse118I	RCCGGY	1 cut(s)	451
BseAI	TCCGGA	1 cut(s)	382
BseBI	CCWGG	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	321, 361
BseGI	GGATG	4 cut(s)	371, 391, 490, 499
BseLI	CCNNNNNNNGG	4 cut(s)	314, 366, 367, 386
BseMII	CTCAG	2 cut(s)	72, 192
BseRI	GAGGAG	1 cut(s)	457
Bsh1285I	CGRYCG	1 cut(s)	312
BshFI	GGCC	3 cut(s)	347, 499, 508
BshNI	GGYRCC	2 cut(s)	67, 317
BsiEI	CGRYCG	1 cut(s)	312
BsiSI	CCGG	3 cut(s)	383, 440, 452
BslFI	GGGAC	3 cut(s)	21, 36, 294
BslI	CCNNNNNNNGG	4 cut(s)	314, 366, 367, 386
BsmAI	GTCTC	2 cut(s)	337, 377
BsmFI	GGGAC	3 cut(s)	21, 36, 294
BsnI	GGCC	3 cut(s)	347, 499, 508
Bso31I	GGTCTC	1 cut(s)	377
Bsp119I	TTCGAA	1 cut(s)	85
Bsp13I	TCCGGA	1 cut(s)	382
Bsp143I	GATC	3 cut(s)	304, 309, 424
BspACI	CCGC	5 cut(s)	294, 399, 402, 431, 488
BspANI	GGCC	3 cut(s)	347, 499, 508
BspCNI	CTCAG	2 cut(s)	71, 193
BspEI	TCCGGA	1 cut(s)	382
BspLI	GGNNCC	3 cut(s)	69, 306, 319
BspPI	GGATC	2 cut(s)	299, 312
BspT104I	TTCGAA	1 cut(s)	85
BspT107I	GGYRCC	2 cut(s)	67, 317
BspTNI	GGTCTC	1 cut(s)	377
BsrFI	RCCGGY	1 cut(s)	451
BssAI	RCCGGY	1 cut(s)	451
BssECI	CCNNGG	2 cut(s)	321, 361
BssMI	GATC	3 cut(s)	304, 309, 424
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	2 cut(s)	35, 232
BstBI	TTCGAA	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	453
BstDEI	CTNAG	3 cut(s)	58, 201, 503
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	4 cut(s)	371, 391, 490, 499
BstHHI	GCGC	1 cut(s)	451
BstKTI	GATC	3 cut(s)	307, 312, 427
BstMAI	GTCTC	2 cut(s)	337, 377
BstMBI	GATC	3 cut(s)	304, 309, 424
BstMCI	CGRYCG	1 cut(s)	312
BstMWI	GCNNNNNNNGC	3 cut(s)	197, 457, 505
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	63, 438
BstV2I	GAAGAC	1 cut(s)	226
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	3 cut(s)	347, 499, 508
BtgI	CCRYGG	1 cut(s)	361
BtgZI	GCGATG	1 cut(s)	282
BtrI	CACGTC	1 cut(s)	152
BtsCI	GGATG	4 cut(s)	371, 391, 490, 499
Cac8I	GCNNGC	1 cut(s)	453
CfoI	GCGC	1 cut(s)	451
Cfr10I	RCCGGY	1 cut(s)	451
Cfr13I	GGNCC	1 cut(s)	497
Csp6I	GTAC	2 cut(s)	68, 318
CviAII	CATG	2 cut(s)	19, 428
CviQI	GTAC	2 cut(s)	68, 318
DdeI	CTNAG	3 cut(s)	58, 201, 503
DpnI	GATC	3 cut(s)	306, 311, 426
DpnII	GATC	3 cut(s)	304, 309, 424
EaeI	YGGCCR	1 cut(s)	345
EciI	GGCGGA	1 cut(s)	417
Eco130I	CCWWGG	1 cut(s)	321
Eco147I	AGGCCT	1 cut(s)	508
Eco31I	GGTCTC	1 cut(s)	377
Eco32I	GATATC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	63
EcoRV	GATATC	1 cut(s)	16
EcoT14I	CCWWGG	1 cut(s)	321
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	2 cut(s)	22, 431
FaiI	YATR	4 cut(s)	20, 183, 222, 429
FaqI	GGGAC	3 cut(s)	21, 36, 294
FatI	CATG	2 cut(s)	18, 427
FauI	CCCGC	1 cut(s)	424
FbaI	TGATCA	1 cut(s)	424
Fnu4HI	GCNGC	1 cut(s)	400
FokI	GGATG	4 cut(s)	378, 398, 497, 506
Fsp4HI	GCNGC	1 cut(s)	400
FspBI	CTAG	1 cut(s)	395
GlaI	GCGC	1 cut(s)	450
GluI	GCNGC	1 cut(s)	400
HaeIII	GGCC	3 cut(s)	347, 499, 508
HapII	CCGG	3 cut(s)	383, 440, 452
HhaI	GCGC	1 cut(s)	451
Hin1II	CATG	2 cut(s)	22, 431
Hin6I	GCGC	1 cut(s)	449
HinP1I	GCGC	1 cut(s)	449
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	4 cut(s)	24, 282, 405, 435
HpaII	CCGG	3 cut(s)	383, 440, 452
HphI	GGTGA	1 cut(s)	231
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	2 cut(s)	304, 309
Hpy188III	TCNNGA	3 cut(s)	11, 383, 409
Hpy8I	GTNNAC	1 cut(s)	96
Hpy99I	CGWCG	1 cut(s)	153
HpyAV	CCTTC	4 cut(s)	121, 149, 252, 475
HpyCH4III	ACNGT	2 cut(s)	35, 232
HpyCH4IV	ACGT	1 cut(s)	151
HpyF10VI	GCNNNNNNNGC	3 cut(s)	197, 457, 505
HpyF3I	CTNAG	3 cut(s)	58, 201, 503
HpySE526I	ACGT	1 cut(s)	151
Hsp92II	CATG	2 cut(s)	22, 431
HspAI	GCGC	1 cut(s)	449
Kpn2I	TCCGGA	1 cut(s)	382
KpnI	GGTACC	2 cut(s)	71, 321
KroI	GCCGGC	1 cut(s)	451
KroNI	GCCGGC	1 cut(s)	453
Ksp22I	TGATCA	1 cut(s)	424
Kzo9I	GATC	3 cut(s)	304, 309, 424
LmnI	GCTCC	2 cut(s)	208, 470
LpnPI	CCDG	7 cut(s)	50, 77, 177, 394, 396, 453, 465
LweI	GCATC	1 cut(s)	475
MaeI	CTAG	1 cut(s)	395
MaeII	ACGT	1 cut(s)	151
MalI	GATC	3 cut(s)	306, 311, 426
MboI	GATC	3 cut(s)	304, 309, 424
MboII	GAAGA	1 cut(s)	226
MflI	RGATCY	1 cut(s)	304
MlyI	GAGTC	2 cut(s)	18, 276
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	7 cut(s)	67, 81, 384, 390, 450, 478, 510
MreI	CGCCGGCG	1 cut(s)	451
MroI	TCCGGA	1 cut(s)	382
MroNI	GCCGGC	1 cut(s)	451
MspI	CCGG	3 cut(s)	383, 440, 452
MspR9I	CCNGG	2 cut(s)	65, 440
MvaI	CCWGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	3 cut(s)	197, 457, 505
NaeI	GCCGGC	1 cut(s)	453
NciI	CCSGG	1 cut(s)	440
NdeII	GATC	3 cut(s)	304, 309, 424
NgoMIV	GCCGGC	1 cut(s)	451
NlaIII	CATG	2 cut(s)	22, 431
NlaIV	GGNNCC	3 cut(s)	69, 306, 319
NspV	TTCGAA	1 cut(s)	85
PceI	AGGCCT	1 cut(s)	508
PcsI	WCGNNNNNNNCGW	1 cut(s)	476
PdiI	GCCGGC	1 cut(s)	453
PfeI	GAWTC	2 cut(s)	405, 435
PkrI	GCNGC	1 cut(s)	401
Ple19I	CGATCG	1 cut(s)	312
PleI	GAGTC	2 cut(s)	18, 276
PpsI	GAGTC	2 cut(s)	18, 276
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspN4I	GGNNCC	3 cut(s)	69, 306, 319
PspPI	GGNCC	1 cut(s)	497
PsuI	RGATCY	1 cut(s)	304
PvuI	CGATCG	1 cut(s)	312
RsaI	GTAC	2 cut(s)	69, 319
RsaNI	GTAC	2 cut(s)	68, 318
SatI	GCNGC	1 cut(s)	400
Sau3AI	GATC	3 cut(s)	304, 309, 424
Sau96I	GGNCC	1 cut(s)	497
SchI	GAGTC	2 cut(s)	18, 276
ScrFI	CCNGG	2 cut(s)	65, 440
SfaNI	GCATC	1 cut(s)	475
SfiI	GGCCNNNNNGGCC	1 cut(s)	505
SfuI	TTCGAA	1 cut(s)	85
SgrAI	CRCCGGYG	1 cut(s)	451
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
SseBI	AGGCCT	1 cut(s)	508
SsiI	CCGC	5 cut(s)	294, 399, 402, 431, 488
SspMI	CTAG	1 cut(s)	395
StuI	AGGCCT	1 cut(s)	508
StyD4I	CCNGG	2 cut(s)	63, 438
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	2 cut(s)	35, 232
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	3 cut(s)	85, 285, 479
TauI	GCSGC	1 cut(s)	402
TfiI	GAWTC	2 cut(s)	405, 435
TspDTI	ATGAA	3 cut(s)	17, 103, 237
XspI	CTAG	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.