Rorug06G0495600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000981
Physical Location & Seq
Reverse (-)
61247313 .. 61253854
6542 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0495600.1

Sequence Viewer

Length: 2805 bp
ATGTCGAAGATGAAGCACCTACTGAGAAAGCTTCACATCGGCGGGGACCAGAGGCTGGCGGAGACGACGGCCGCGGTGGCCCCGCCGGTGGTGGCGAGTCCGGGGACGGCGCATCTCAACCCGACGGCGTCGTCACCGGCGTCGTCGTCGTCGGGGTCGGCGACAATGGGGAGAATCACGGCGGTGGAGTCGGTGAGTGATCGGACGTCTGGCGACGGCGGGGGGAGCGGGAGTGGCGGAGGAGGCGTGGATTTCAATTTCTTGGAGGAGGAGTTTCAGGTACAGTTGGCCCTAGCGATTAGCGCTTCCGATCCCGATTCGCGCGACGACCCCGAGACGGCTCAGATCGACGCCGCGAAACGGATTAGCCTCGGCTGCGCGGCGACGTCGCTCGCCGACGCACAAGCCCCTTTTCAGATGCTTTCGCTTCGCTACTGGAGCCATAATGTTGTAGATTATAATGAAAAAGTGGTGGATGGATTTTACGATGTGTATGGAATTACCTCGAATTCATTTAGACAAGGGAAGATGCCATTGTTGGTGGAATTTCGGGCGGTATCGGTTTCAGATAATGTCGACTACGATGTCATATTAGTTAACCGTTTTGTTGATACTGAACTGCAACAACTCGAGAAAAGAGCATATGCTGCATCTCTAGAGTCGGGGATTTCTCAACATGGTCTACTTTTAAGTGGCTTGATTCAGAAGATTGCTGATATTGTTGTTGATAGAATGGGTGGTCCAGTTGGAGATGCGGATGAGATTTTAAGAAGGTGGAAAATAAGGAGGCATGAGTTGCGGAGTTCAATGAACACTATCATTCTTCCCCTCGGAAAAATTGATGTTGGACTTTCACGCCACCGGGCCCTGCTCTTTAAGGTATTAGCTGATAAGATAAATCTTCCATGTATGCTGGTCAAAGGTAGCTACTACACTGGTACTGATGATGGAGCTGTAAACTTGATTAAAATTGATAGTGGAATTGGAAGCGAATATATTATTGATTTGATGGGTGCTCCTGGAACACTAATTCCTGCTGAGGTACCTACTAGTCAGCTCCCAAATTCTTTTTTTGCCATAAGGAGCTTTCAAGATCCCACAGAAATGCCTACAGAGTTGCCCAAAGATCTGTGTTTACTACAAGCTGAGGGAACTGGAATGTCGGCAGCTCCACCTGGTCTTGAAAGAGCTTCCACATTTGGCAGCTCAAGGTCAGAAGAAGCATCATATGCAGGTGTTCAAACAAAAGATGACCAAAGAAGCGTCGTGGATGAAAATCAAATTGAGATTCTTAAAAGTGAGCTTGAGACTCCTCTTAAAAGTAAATCATGTGGAAGTTCATCAGGCCCATCTGGGAAAGCTACATCTGCACAAAAAAGAAAAGTGAAAAATGTATCAAGGTATGTCATCAGTGCCGCAAAGAACCCAGAATTTGCACAGAAACTACATGCTGTCTTGTTGGAGAGCGGTGCATCACCTCCTCCCGACTTATTTTCAGATATGAATCCTCAATACCTGAATGAAGGTAAATTGCTTGGACAAATCCATGCAAATGGGGAACTTGTAGATGAGGGGGTGGTTCATGATTATCTGGTTAAACTATTGTCAAGCAGTGATCAATCCTCTGCCGTGGATGTAGCTGAGCAACGGAATGAGTGGAGGACCAATTCTTTACTCTCTGATAATGTTGATGAGGGATTTGTAATGGTTTCTGGCAGAACTAGTGAAACAACCCAGTTTGGTGCTATAAATTTAGATCCTGCTTTTGGTAATCCCCCAAGAATGAATGCAGAAGCTTTTCATGAGGAGAAAATTCATGATATATCTATGGTCTCTGGAACAACTTCTGCTAACACTCAATTGGGCAAAGAATCTGTTGCTCAATCAACGCAAACAGCCAATAGCAGCCTGAATGCTGCTTGGGATAGTCACGTTGATAGGTACCCAGCGTTGGGAGAAGTTGCGGAGTGGGAAATTCTATGGGAGGATCTTCAGATTGGAGAGCGCATTGGCATTGGTTCATATGGTGAGGTATATCATGCAGATTGGAATGGCACTGAAGTAGCTGTGAAGAAATTTTTAGATCAAGATTTTTCGGGTGACGCATTGGTTCAGTTTAGATGTGAAGTAGAGATCATGTTAAGACTTCGACATCCAAATGTTGTGCTTTTCATGGGCGCTGTTACTCGCCCTCCCCATTTCTCCATCCTGACAGAGTTTCTTCCCAGGGGTAGCTTATACCGATTACTGCATCGTCCAAATTCTCAACTTGATGAAAAGAGGCGAATGCGAATGGCTCTTGATGTGGCGAAGGGAATGAATTACCTCCACACCAGCAATCCAACAGTTGTGCATCGAGACCTTAAGTCTCCAAATCTCCTTGTTGATAAGAATTGGAATGTGAAGGTTTGTGACTTTGGGTTGTCACGTACGAAGCACCACACTTATCTGTCCTCAAAGTCCACTGCTGGAACGCCGGAATGGATGGCACCGGAAGTTTTAAGGAATGAATTAGCTAACGAGAAGTGTGATGTGTACAGTTTTGGTGTGATATTATGGGAATTGACTACTTGCTGTATCCCATGGAAAGGATTGAACCCAATGCAGGTTGTTGGAGCTGTTGGATTCCAAAATAGGCGTCTTGAAATTCCGGATGACGTTGACCCAGTGGTTGCCGAGATAATACGTGATTGTTGGCAAACAGAGCCAAATCTACGGCCTTCTTTCTCCCAGCTCATGGTCCGACTCAAGCGTCTTCAACGGCTTGTTGGAAGAACGAACTCTGCAAATCAAATGACTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

934

Amino Acids

102.35

Weight (kDa)

5.52

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR1_CTR1_ARMC3_pept PF14381 139 - 344 6.5e-71 EDR1/CTR1/ARMC3, peptidase-like
PK_Tyr_Ser-Thr PF07714 664 - 915 4.6e-66 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 665 - 913 2e-51 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 459
AarI CACCTGC 1 cut(s) 1223
AasI GACNNNNNNGTC 3 cut(s) 130, 584, 2751
AatII GACGTC 2 cut(s) 209, 389
Acc36I ACCTGC 2 cut(s) 1223, 2596
Acc65I GGTACC 2 cut(s) 1042, 1941
AccB1I GGYRCC 3 cut(s) 1042, 1941, 2488
AccB7I CCANNNNNTGG 2 cut(s) 55, 2737
AccBSI CCGCTC 2 cut(s) 228, 1467
AccI GTMKAC 2 cut(s) 576, 682
AccII CGCG 5 cut(s) 74, 322, 324, 356, 380
AccIII TCCGGA 1 cut(s) 2650
AclWI GGATC 4 cut(s) 305, 1088, 1751, 1995
AcoI YGGCCR 1 cut(s) 69
AcuI CTGAAG 2 cut(s) 1976, 2079
AcyI GRCGYC 6 cut(s) 128, 140, 206, 351, 386, 2638
AfaI GTAC 6 cut(s) 282, 940, 1044, 1943, 2431, 2537
AfeI AGCGCT 1 cut(s) 304
AflII CTTAAG 1 cut(s) 2363
AgsI TTSAA 8 cut(s) 256, 807, 1091, 1184, 1241, 2596, 2645, 2759
AhdI GACNNNNNGTC 1 cut(s) 2365
AhlI ACTAGT 2 cut(s) 1049, 1721
AjnI CCWGG 3 cut(s) 1018, 1174, 2225
AleI CACNNNNGTG 1 cut(s) 182
AloI GAACNNNNNNTCC 2 cut(s) 1015, 1047
Alw21I GWGCWC 1 cut(s) 1018
Alw26I GTCTC 6 cut(s) 56, 329, 1301, 1837, 2352, 2373
AlwI GGATC 4 cut(s) 305, 1088, 1751, 1995
AlwNI CAGNNNCTG 1 cut(s) 55
Ama87I CYCGRG 2 cut(s) 332, 629
Aor13HI TCCGGA 1 cut(s) 2650
Aor51HI AGCGCT 1 cut(s) 304
AoxI GGCC 6 cut(s) 69, 78, 288, 864, 1345, 2717
ApaI GGGCCC 1 cut(s) 868
ApeKI GCWGC 6 cut(s) 375, 647, 1166, 1203, 1905, 1916
ArsI GACNNNNNNTTYG 2 cut(s) 2623, 2655
Asp700I GAANNNNTTC 2 cut(s) 1797, 1843
Asp718I GGTACC 2 cut(s) 1042, 1941
AspLEI GCGC 6 cut(s) 112, 305, 324, 380, 2007, 2180
AspS9I GGNCC 9 cut(s) 46, 79, 289, 740, 864, 865, 1346, 1662, 2740
AsuC2I CCSGG 2 cut(s) 102, 863
AsuHPI GGTGA 5 cut(s) 126, 205, 1467, 2039, 2111
AvaI CYCGRG 2 cut(s) 332, 629
AvaII GGWCC 4 cut(s) 46, 740, 1662, 2740
BaeGI GKGCMC 1 cut(s) 868
BanI GGYRCC 3 cut(s) 1042, 1941, 2488
BanII GRGCYC 1 cut(s) 868
BbsI GAAGAC 1 cut(s) 2747
Bbv12I GWGCWC 1 cut(s) 1018
BbvCI CCTCAGC 2 cut(s) 1038, 1146
BbvI GCAGC 6 cut(s) 362, 634, 1178, 1215, 1903, 1917
BccI CCATC 6 cut(s) 470, 941, 1003, 1357, 2213, 2479
BceAI ACGGC 9 cut(s) 84, 123, 141, 195, 232, 354, 1613, 2732, 2777
BciT130I CCWGG 3 cut(s) 1020, 1176, 2227
BciVI GTATCC 1 cut(s) 2588
BclI TGATCA 1 cut(s) 1615
BcnI CCSGG 2 cut(s) 102, 863
BcoDI GTCTC 6 cut(s) 56, 329, 1301, 1837, 2352, 2373
BcuI ACTAGT 2 cut(s) 1049, 1721
BfaI CTAG 4 cut(s) 293, 656, 1050, 1722
BfmI CTRYAG 1 cut(s) 1110
BfoI RGCGCY 2 cut(s) 306, 2181
BfrI CTTAAG 1 cut(s) 2363
BfuAI ACCTGC 2 cut(s) 1223, 2596
BfuI GTATCC 1 cut(s) 2588
BglI GCCNNNNNGGC 1 cut(s) 77
BglII AGATCT 1 cut(s) 1126
BlpI GCTNAGC 1 cut(s) 1641
Bme1390I CCNGG 5 cut(s) 102, 863, 1020, 1176, 2227
Bme18I GGWCC 4 cut(s) 46, 740, 1662, 2740
BmeRI GACNNNNNGTC 1 cut(s) 2365
BmeT110I CYCGRG 2 cut(s) 332, 629
BmgT120I GGNCC 9 cut(s) 46, 79, 289, 740, 864, 865, 1346, 1662, 2740
BmiI GGNNCC 7 cut(s) 47, 81, 440, 866, 1044, 1943, 2490
BmrFI CCNGG 5 cut(s) 102, 863, 1020, 1176, 2227
BmrI ACTGGG 2 cut(s) 1729, 2660
BmsI GCATC 9 cut(s) 121, 408, 519, 659, 742, 1232, 1481, 2260, 2362
BmuI ACTGGG 2 cut(s) 1729, 2660
BpiI GAAGAC 1 cut(s) 2747
BpmI CTGGAG 1 cut(s) 457
Bpu10I CCTNAGC 2 cut(s) 1038, 1146
Bpu1102I GCTNAGC 1 cut(s) 1641
BpuEI CTTGAG 3 cut(s) 1192, 1325, 2732
BpuMI CCSGG 2 cut(s) 102, 863
BsaAI YACGTR 2 cut(s) 2429, 2687
BsaBI GATNNNNATC 2 cut(s) 1275, 1503
BsaHI GRCGYC 6 cut(s) 128, 140, 206, 351, 386, 2638
BsaI GGTCTC 2 cut(s) 1837, 2352
BsaJI CCNNGG 8 cut(s) 72, 101, 370, 829, 1629, 2225, 2226, 2582
BsaWI WCCGGW 2 cut(s) 2491, 2650
BsaXI ACNNNNNCTCC 8 cut(s) 217, 231, 247, 257, 261, 287, 2176, 2206
Bse118I RCCGGY 2 cut(s) 85, 136
Bse1I ACTGG 6 cut(s) 440, 743, 940, 1159, 1735, 2666
Bse8I GATNNNNATC 2 cut(s) 1275, 1503
BseAI TCCGGA 1 cut(s) 2650
BseBI CCWGG 3 cut(s) 1020, 1176, 2227
BseDI CCNNGG 8 cut(s) 72, 101, 370, 829, 1629, 2225, 2226, 2582
BseGI GGATG 8 cut(s) 481, 763, 1276, 1639, 2152, 2205, 2490, 2659
BseJI GATNNNNATC 2 cut(s) 1275, 1503
BseMII CTCAG 5 cut(s) 14, 356, 1029, 1137, 1632
BseNI ACTGG 6 cut(s) 440, 743, 940, 1159, 1735, 2666
BseRI GAGGAG 6 cut(s) 255, 281, 284, 1302, 1470, 1820
BseSI GKGCMC 1 cut(s) 868
BseX3I CGGCCG 1 cut(s) 69
BseXI GCAGC 6 cut(s) 362, 634, 1178, 1215, 1903, 1917
BseYI CCCAGC 2 cut(s) 1945, 2730
BsgI GTGCAG 1 cut(s) 1353
Bsh1236I CGCG 5 cut(s) 74, 322, 324, 356, 380
Bsh1285I CGRYCG 1 cut(s) 72
BshFI GGCC 6 cut(s) 71, 80, 290, 866, 1347, 2719
BshNI GGYRCC 3 cut(s) 1042, 1941, 2488
BsiEI CGRYCG 1 cut(s) 72
BsiHKAI GWGCWC 1 cut(s) 1018
BsiHKCI CYCGRG 2 cut(s) 332, 629
BsiSI CCGG 7 cut(s) 86, 101, 137, 862, 2477, 2492, 2651
BsiWI CGTACG 1 cut(s) 2429
BslFI GGGAC 2 cut(s) 59, 118
BsmAI GTCTC 6 cut(s) 56, 329, 1301, 1837, 2352, 2373
BsmBI CGTCTC 2 cut(s) 56, 329
BsmFI GGGAC 2 cut(s) 59, 118
BsmI GAATGC 3 cut(s) 1792, 1918, 2292
BsnI GGCC 6 cut(s) 71, 80, 290, 866, 1347, 2719
Bso31I GGTCTC 2 cut(s) 1837, 2352
BsoBI CYCGRG 2 cut(s) 332, 629
Bsp120I GGGCCC 1 cut(s) 864
Bsp1286I GDGCHC 2 cut(s) 868, 1018
Bsp13I TCCGGA 1 cut(s) 2650
Bsp1407I TGTACA 1 cut(s) 2535
Bsp1720I GCTNAGC 1 cut(s) 1641
Bsp19I CCATGG 1 cut(s) 2582
BspANI GGCC 6 cut(s) 71, 80, 290, 866, 1347, 2719
BspCNI CTCAG 5 cut(s) 15, 355, 1030, 1138, 1633
BspEI TCCGGA 1 cut(s) 2650
BspFNI CGCG 5 cut(s) 74, 322, 324, 356, 380
BspHI TCATGA 3 cut(s) 1582, 1801, 1816
BspLI GGNNCC 7 cut(s) 47, 81, 440, 866, 1044, 1943, 2490
BspMI ACCTGC 2 cut(s) 1223, 2596
BspPI GGATC 4 cut(s) 305, 1088, 1751, 1995
BspT107I GGYRCC 3 cut(s) 1042, 1941, 2488
BspTI CTTAAG 1 cut(s) 2363
BspTNI GGTCTC 2 cut(s) 1837, 2352
BsrBI CCGCTC 2 cut(s) 228, 1467
BsrFI RCCGGY 2 cut(s) 85, 136
BsrGI TGTACA 1 cut(s) 2535
BsrI ACTGG 6 cut(s) 440, 743, 940, 1159, 1735, 2666
BssAI RCCGGY 2 cut(s) 85, 136
BssECI CCNNGG 8 cut(s) 72, 101, 370, 829, 1629, 2225, 2226, 2582
BssNI GRCGYC 6 cut(s) 128, 140, 206, 351, 386, 2638
BssT1I CCWWGG 1 cut(s) 2582
Bst2UI CCWGG 3 cut(s) 1020, 1176, 2227
Bst4CI ACNGT 4 cut(s) 285, 602, 2347, 2540
BstACI GRCGYC 6 cut(s) 128, 140, 206, 351, 386, 2638
BstAFI CTTAAG 1 cut(s) 2363
BstAPI GCANNNNNTGC 3 cut(s) 647, 796, 1229
BstAUI TGTACA 1 cut(s) 2535
BstBAI YACGTR 2 cut(s) 2429, 2687
BstC8I GCNNGC 2 cut(s) 57, 393
BstDEI CTNAG 5 cut(s) 23, 342, 1038, 1146, 1641
BstDSI CCRYGG 3 cut(s) 72, 1629, 2582
BstF5I GGATG 8 cut(s) 481, 763, 1276, 1639, 2152, 2205, 2490, 2659
BstFNI CGCG 5 cut(s) 74, 322, 324, 356, 380
BstH2I RGCGCY 2 cut(s) 306, 2181
BstHHI GCGC 6 cut(s) 112, 305, 324, 380, 2007, 2180
BstMAI GTCTC 6 cut(s) 56, 329, 1301, 1837, 2352, 2373
BstMCI CGRYCG 1 cut(s) 72
BstNI CCWGG 3 cut(s) 1020, 1176, 2227
BstNSI RCATGY 1 cut(s) 1451
BstSCI CCNGG 5 cut(s) 100, 861, 1018, 1174, 2225
BstSFI CTRYAG 1 cut(s) 1110
BstSLI GKGCMC 1 cut(s) 868
BstUI CGCG 5 cut(s) 74, 322, 324, 356, 380
BstV1I GCAGC 6 cut(s) 362, 634, 1178, 1215, 1903, 1917
BstV2I GAAGAC 1 cut(s) 2747
BstX2I RGATCY 4 cut(s) 1093, 1126, 1756, 1987
BstXI CCANNNNNNTGG 1 cut(s) 1553
BstYI RGATCY 4 cut(s) 1093, 1126, 1756, 1987
BstZI CGGCCG 1 cut(s) 69
BsuI GTATCC 1 cut(s) 2588
BsuRI GGCC 6 cut(s) 71, 80, 290, 866, 1347, 2719
BtgI CCRYGG 3 cut(s) 72, 1629, 2582
BtsCI GGATG 8 cut(s) 481, 763, 1276, 1639, 2152, 2205, 2490, 2659
BtsI GCAGTG 2 cut(s) 1618, 2463
BtsIMutI CAGTG 6 cut(s) 933, 1417, 1618, 2055, 2463, 2673
BveI ACCTGC 2 cut(s) 1223, 2596
Cac8I GCNNGC 2 cut(s) 57, 393
CaiI CAGNNNCTG 1 cut(s) 55
CciI TCATGA 3 cut(s) 1582, 1801, 1816
CfoI GCGC 6 cut(s) 112, 305, 324, 380, 2007, 2180
Cfr10I RCCGGY 2 cut(s) 85, 136
Cfr13I GGNCC 9 cut(s) 46, 79, 289, 740, 864, 865, 1346, 1662, 2740
Cfr42I CCGCGG 1 cut(s) 75
CseI GACGC 8 cut(s) 117, 129, 359, 407, 1252, 2111, 2627, 2741
CsiI ACCWGGT 1 cut(s) 1174
Csp6I GTAC 6 cut(s) 281, 939, 1043, 1942, 2430, 2536
CviQI GTAC 6 cut(s) 281, 939, 1043, 1942, 2430, 2536
DdeI CTNAG 5 cut(s) 23, 342, 1038, 1146, 1641
DrdI GACNNNNNNGTC 3 cut(s) 130, 584, 2751
DriI GACNNNNNGTC 1 cut(s) 2365
DseDI GACNNNNNNGTC 3 cut(s) 130, 584, 2751
EaeI YGGCCR 1 cut(s) 69
EagI CGGCCG 1 cut(s) 69
Eam1105I GACNNNNNGTC 1 cut(s) 2365
EciI GGCGGA 2 cut(s) 74, 252
EclXI CGGCCG 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 2582
Eco24I GRGCYC 1 cut(s) 868
Eco31I GGTCTC 2 cut(s) 1837, 2352
Eco47I GGWCC 4 cut(s) 46, 740, 1662, 2740
Eco47III AGCGCT 1 cut(s) 304
Eco52I CGGCCG 1 cut(s) 69
Eco57I CTGAAG 2 cut(s) 1976, 2079
Eco88I CYCGRG 2 cut(s) 332, 629
EcoO109I RGGNCCY 1 cut(s) 865
EcoRI GAATTC 1 cut(s) 508
EcoRII CCWGG 3 cut(s) 1018, 1174, 2225
EcoT14I CCWWGG 1 cut(s) 2582
EcoT38I GRGCYC 1 cut(s) 868
ErhI CCWWGG 1 cut(s) 2582
Esp3I CGTCTC 2 cut(s) 56, 329
FaqI GGGAC 2 cut(s) 59, 118
FauI CCCGC 4 cut(s) 35, 90, 212, 221
FauNDI CATATG 3 cut(s) 643, 1228, 2023
FbaI TGATCA 1 cut(s) 1615
FblI GTMKAC 2 cut(s) 576, 682
FokI GGATG 8 cut(s) 488, 770, 1283, 1646, 2139, 2192, 2497, 2666
FriOI GRGCYC 1 cut(s) 868
FspBI CTAG 4 cut(s) 293, 656, 1050, 1722
GlaI GCGC 6 cut(s) 111, 304, 323, 379, 2006, 2179
GsaI CCCAGC 2 cut(s) 1949, 2734
GsuI CTGGAG 1 cut(s) 457
HaeII RGCGCY 2 cut(s) 306, 2181
HaeIII GGCC 6 cut(s) 71, 80, 290, 866, 1347, 2719
HapII CCGG 7 cut(s) 86, 101, 137, 862, 2477, 2492, 2651
HgaI GACGC 8 cut(s) 117, 129, 359, 407, 1252, 2111, 2627, 2741
HhaI GCGC 6 cut(s) 112, 305, 324, 380, 2007, 2180
Hin1I GRCGYC 6 cut(s) 128, 140, 206, 351, 386, 2638
Hin6I GCGC 6 cut(s) 110, 303, 322, 378, 2005, 2178
HinP1I GCGC 6 cut(s) 110, 303, 322, 378, 2005, 2178
HincII GTYRAC 3 cut(s) 577, 598, 2662
HindII GTYRAC 3 cut(s) 577, 598, 2662
HindIII AAGCTT 2 cut(s) 29, 1794
HpaI GTTAAC 1 cut(s) 598
HpaII CCGG 7 cut(s) 86, 101, 137, 862, 2477, 2492, 2651
HphI GGTGA 5 cut(s) 126, 205, 1467, 2039, 2111
Hpy166II GTNNAC 8 cut(s) 577, 598, 683, 958, 1136, 2463, 2536, 2662
Hpy8I GTNNAC 8 cut(s) 577, 598, 683, 958, 1136, 2463, 2536, 2662
HpyAV CCTTC 5 cut(s) 765, 1517, 2305, 2398, 2730
HpyCH4III ACNGT 4 cut(s) 285, 602, 2347, 2540
HpyCH4IV ACGT 6 cut(s) 206, 386, 1932, 2428, 2658, 2686
HpyF3I CTNAG 5 cut(s) 23, 342, 1038, 1146, 1641
HpySE526I ACGT 6 cut(s) 206, 386, 1932, 2428, 2658, 2686
Hsp92I GRCGYC 6 cut(s) 128, 140, 206, 351, 386, 2638
HspAI GCGC 6 cut(s) 110, 303, 322, 378, 2005, 2178
Kpn2I TCCGGA 1 cut(s) 2650
KpnI GGTACC 2 cut(s) 1046, 1945
Ksp22I TGATCA 1 cut(s) 1615
KspAI GTTAAC 1 cut(s) 598
KspI CCGCGG 1 cut(s) 75
LmnI GCTCC 8 cut(s) 225, 438, 950, 1021, 1062, 1083, 1174, 2615
Lsp1109I GCAGC 6 cut(s) 362, 634, 1178, 1215, 1903, 1917
LweI GCATC 9 cut(s) 121, 408, 519, 659, 742, 1232, 1481, 2260, 2362
MabI ACCWGGT 1 cut(s) 1174
MaeI CTAG 4 cut(s) 293, 656, 1050, 1722
MaeII ACGT 6 cut(s) 206, 386, 1932, 2428, 2658, 2686
MaeIII GTNAC 6 cut(s) 132, 1928, 2099, 2182, 2411, 2424
MbiI CCGCTC 2 cut(s) 228, 1467
MfeI CAATTG 1 cut(s) 1859
MflI RGATCY 4 cut(s) 1093, 1126, 1756, 1987
MhlI GDGCHC 2 cut(s) 868, 1018
MlyI GAGTC 6 cut(s) 106, 197, 668, 1303, 2739, 2791
MmeI TCCRAC 8 cut(s) 727, 826, 1440, 2366, 2593, 2602, 2749, 2767
MroI TCCGGA 1 cut(s) 2650
MroXI GAANNNNTTC 2 cut(s) 1797, 1843
MslI CAYNNNNRTG 4 cut(s) 182, 1103, 1551, 2157
MspA1I CMGCKG 1 cut(s) 74
MspCI CTTAAG 1 cut(s) 2363
MspI CCGG 7 cut(s) 86, 101, 137, 862, 2477, 2492, 2651
MspR9I CCNGG 5 cut(s) 102, 863, 1020, 1176, 2227
MunI CAATTG 1 cut(s) 1859
Mva1269I GAATGC 3 cut(s) 1792, 1918, 2292
MvaI CCWGG 3 cut(s) 1020, 1176, 2227
MvnI CGCG 5 cut(s) 74, 322, 324, 356, 380
NciI CCSGG 2 cut(s) 102, 863
NcoI CCATGG 1 cut(s) 2582
NdeI CATATG 3 cut(s) 643, 1228, 2023
NlaIV GGNNCC 7 cut(s) 47, 81, 440, 866, 1044, 1943, 2490
NmeAIII GCCGAG 2 cut(s) 351, 2701
NmuCI GTSAC 5 cut(s) 132, 1928, 2099, 2411, 2424
NspI RCATGY 1 cut(s) 1451
OliI CACNNNNGTG 1 cut(s) 182
PaeR7I CTCGAG 1 cut(s) 629
PagI TCATGA 3 cut(s) 1582, 1801, 1816
PaqCI CACCTGC 1 cut(s) 1223
PasI CCCWGGG 1 cut(s) 2226
PcsI WCGNNNNNNNCGW 2 cut(s) 137, 158
PctI GAATGC 3 cut(s) 1792, 1918, 2292
PdmI GAANNNNTTC 2 cut(s) 1797, 1843
PfeI GAWTC 7 cut(s) 174, 317, 700, 1288, 1504, 1871, 2625
Pfl23II CGTACG 1 cut(s) 2429
PflFI GACNNNGTC 1 cut(s) 127
PflMI CCANNNNNTGG 2 cut(s) 55, 2737
PfoI TCCNGGA 1 cut(s) 1018
PleI GAGTC 6 cut(s) 105, 196, 667, 1303, 2739, 2791
PpsI GAGTC 6 cut(s) 105, 196, 667, 1303, 2739, 2791
Ppu21I YACGTR 2 cut(s) 2429, 2687
PsiI TTATAA 1 cut(s) 459
Psp6I CCWGG 3 cut(s) 1018, 1174, 2225
PspFI CCCAGC 2 cut(s) 1945, 2730
PspGI CCWGG 3 cut(s) 1018, 1174, 2225
PspLI CGTACG 1 cut(s) 2429
PspN4I GGNNCC 7 cut(s) 47, 81, 440, 866, 1044, 1943, 2490
PspOMI GGGCCC 1 cut(s) 864
PspPI GGNCC 9 cut(s) 46, 79, 289, 740, 864, 865, 1346, 1662, 2740
PstNI CAGNNNCTG 1 cut(s) 55
PsuI RGATCY 4 cut(s) 1093, 1126, 1756, 1987
PsyI GACNNNGTC 1 cut(s) 127
RsaI GTAC 6 cut(s) 282, 940, 1044, 1943, 2431, 2537
RsaNI GTAC 6 cut(s) 281, 939, 1043, 1942, 2430, 2536
RseI CAYNNNNRTG 4 cut(s) 182, 1103, 1551, 2157
SacII CCGCGG 1 cut(s) 75
SalI GTCGAC 1 cut(s) 575
Sau96I GGNCC 9 cut(s) 46, 79, 289, 740, 864, 865, 1346, 1662, 2740
SchI GAGTC 6 cut(s) 106, 197, 668, 1303, 2739, 2791
ScrFI CCNGG 5 cut(s) 102, 863, 1020, 1176, 2227
SduI GDGCHC 2 cut(s) 868, 1018
SexAI ACCWGGT 1 cut(s) 1174
SfaNI GCATC 9 cut(s) 121, 408, 519, 659, 742, 1232, 1481, 2260, 2362
SfcI CTRYAG 1 cut(s) 1110
SfiI GGCCNNNNNGGCC 1 cut(s) 77
Sfr274I CTCGAG 1 cut(s) 629
Sfr303I CCGCGG 1 cut(s) 75
SgrAI CRCCGGYG 2 cut(s) 85, 136
SgrBI CCGCGG 1 cut(s) 75
SinI GGWCC 4 cut(s) 46, 740, 1662, 2740
SlaI CTCGAG 1 cut(s) 629
SmiMI CAYNNNNRTG 4 cut(s) 182, 1103, 1551, 2157
SmlI CTYRAG 5 cut(s) 629, 1207, 1304, 2363, 2747
SmoI CTYRAG 5 cut(s) 629, 1207, 1304, 2363, 2747
SpeI ACTAGT 2 cut(s) 1049, 1721
SspMI CTAG 4 cut(s) 293, 656, 1050, 1722
StyD4I CCNGG 5 cut(s) 100, 861, 1018, 1174, 2225
StyI CCWWGG 1 cut(s) 2582
TaaI ACNGT 4 cut(s) 285, 602, 2347, 2540
TaiI ACGT 6 cut(s) 209, 389, 1935, 2431, 2661, 2689
TaqI TCGA 8 cut(s) 5, 348, 506, 576, 630, 2149, 2356, 2800
TatI WGTACW 1 cut(s) 2535
TauI GCSGC 4 cut(s) 74, 356, 383, 1418
TfiI GAWTC 7 cut(s) 174, 317, 700, 1288, 1504, 1871, 2625
TscAI CASTG 6 cut(s) 940, 1417, 1618, 2062, 2470, 2673
TseFI GTSAC 5 cut(s) 132, 1928, 2099, 2411, 2424
TseI GCWGC 6 cut(s) 375, 647, 1166, 1203, 1905, 1916
Tsp45I GTSAC 5 cut(s) 132, 1928, 2099, 2411, 2424
TspGWI ACGGA 2 cut(s) 376, 1663
TspRI CASTG 6 cut(s) 940, 1417, 1618, 2062, 2470, 2673
Tth111I GACNNNGTC 1 cut(s) 127
Van91I CCANNNNNTGG 2 cut(s) 55, 2737
Vha464I CTTAAG 1 cut(s) 2363
VpaK11BI GGWCC 4 cut(s) 46, 740, 1662, 2740
XbaI TCTAGA 1 cut(s) 655
XceI RCATGY 1 cut(s) 1451
XhoI CTCGAG 1 cut(s) 629
XmiI GTMKAC 2 cut(s) 576, 682
XmnI GAANNNNTTC 2 cut(s) 1797, 1843
XspI CTAG 4 cut(s) 293, 656, 1050, 1722
ZraI GACGTC 2 cut(s) 207, 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.