RLG00000012673

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000981
Physical Location & Seq
Reverse (-)
21147243 .. 21147761
519 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012673

Sequence Viewer

Length: 444 bp
ATGCTCTCTCTTTCTCTAGAGAGAAAAAACCTAAGGTCGCAACCTGCCTTGATTGGAGGTGACGGTACTGCAAATCTATTGACTCTCGGCAGAGAGGTTTTCCGGCTACGCAGTGGCTCTGTTACTTGGGGCTGGAAGGGTGGCAGCTTGCCTCTTTCTTCTCTTCTACTTGGCAGCGACGACGAATGGTTTCGTCAGTGCCCCATGATGGCGGTCCGATTGGCTGCGAAGACTCGAAATTTTCTCTCGTCGGCGTCAAGTGGCGCTGGGCCTTTCACTCTAGGCGAGGTCGGATGGGAACTGGTTGATGGCTGGGGTCGAGGAAATCTGGTTCAGAACCAATCGGGGACAGTTTGGAAGGTTCAAGCCGAGGAACTGCTGTGGACACGATTGTGTTCTGTAGATTTTGGGAGGAGGACAAGGCTACTGAAGCGGCGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

16.26

Weight (kDa)

10.75

Isoelectric Point (pI)

38.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 52
AciI CCGC 3 cut(s) 212, 433, 436
AcsI RAATTY 1 cut(s) 238
AcyI GRCGYC 1 cut(s) 254
AfaI GTAC 1 cut(s) 67
AfiI CCNNNNNNNGG 1 cut(s) 208
AgsI TTSAA 1 cut(s) 365
AleI CACNNNNGTG 1 cut(s) 391
AloI GAACNNNNNNTCC 2 cut(s) 315, 347
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
AoxI GGCC 1 cut(s) 269
ApeKI GCWGC 3 cut(s) 144, 174, 224
ApoI RAATTY 1 cut(s) 238
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 266
AspS9I GGNCC 2 cut(s) 214, 269
AsuHPI GGTGA 1 cut(s) 71
AvaII GGWCC 1 cut(s) 214
AxyI CCTNAGG 1 cut(s) 32
BaeGI GKGCMC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 236
BbvI GCAGC 3 cut(s) 156, 186, 211
BccI CCATC 3 cut(s) 202, 288, 302
BfaI CTAG 2 cut(s) 17, 281
BfmI CTRYAG 1 cut(s) 399
BfoI RGCGCY 1 cut(s) 267
BfuAI ACCTGC 1 cut(s) 52
BisI GCNGC 5 cut(s) 145, 175, 225, 434, 437
BlsI GCNGC 5 cut(s) 146, 176, 226, 435, 438
Bme18I GGWCC 1 cut(s) 214
BmgT120I GGNCC 2 cut(s) 214, 269
BpiI GAAGAC 1 cut(s) 236
BsaHI GRCGYC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 369
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 306
Bse21I CCTNAGG 1 cut(s) 32
BseDI CCNNGG 1 cut(s) 369
BseGI GGATG 1 cut(s) 299
BseLI CCNNNNNNNGG 1 cut(s) 208
BseNI ACTGG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 427
BseSI GKGCMC 1 cut(s) 203
BseXI GCAGC 3 cut(s) 156, 186, 211
BseYI CCCAGC 2 cut(s) 266, 312
BshFI GGCC 1 cut(s) 271
BsiSI CCGG 1 cut(s) 103
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 1 cut(s) 208
BsmFI GGGAC 1 cut(s) 361
BsnI GGCC 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 203
BspACI CCGC 3 cut(s) 212, 433, 436
BspANI GGCC 1 cut(s) 271
BspMI ACCTGC 1 cut(s) 52
BsrI ACTGG 1 cut(s) 306
BssECI CCNNGG 1 cut(s) 369
BssNI GRCGYC 1 cut(s) 254
Bst4CI ACNGT 2 cut(s) 65, 352
Bst6I CTCTTC 1 cut(s) 168
BstACI GRCGYC 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 299
BstH2I RGCGCY 1 cut(s) 267
BstHHI GCGC 1 cut(s) 266
BstMWI GCNNNNNNNGC 1 cut(s) 430
BstSFI CTRYAG 1 cut(s) 399
BstSLI GKGCMC 1 cut(s) 203
BstV1I GCAGC 3 cut(s) 156, 186, 211
BstV2I GAAGAC 1 cut(s) 236
Bsu36I CCTNAGG 1 cut(s) 32
BsuRI GGCC 1 cut(s) 271
BtsCI GGATG 1 cut(s) 299
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 118, 203
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 149
CfoI GCGC 1 cut(s) 266
Cfr13I GGNCC 2 cut(s) 214, 269
CpoI CGGWCCG 1 cut(s) 214
CseI GACGC 1 cut(s) 243
Csp6I GTAC 1 cut(s) 66
CspI CGGWCCG 1 cut(s) 214
CviAII CATG 1 cut(s) 205
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 1 cut(s) 32
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 214
Eco81I CCTNAGG 1 cut(s) 32
FaeI CATG 1 cut(s) 208
FaiI YATR 1 cut(s) 206
FaqI GGGAC 1 cut(s) 361
FatI CATG 1 cut(s) 204
Fnu4HI GCNGC 5 cut(s) 145, 175, 225, 434, 437
FokI GGATG 1 cut(s) 306
Fsp4HI GCNGC 5 cut(s) 145, 175, 225, 434, 437
FspBI CTAG 2 cut(s) 17, 281
GlaI GCGC 1 cut(s) 265
GluI GCNGC 5 cut(s) 145, 175, 225, 434, 437
GsaI CCCAGC 2 cut(s) 270, 316
HaeII RGCGCY 1 cut(s) 267
HaeIII GGCC 1 cut(s) 271
HapII CCGG 1 cut(s) 103
HgaI GACGC 1 cut(s) 243
HhaI GCGC 1 cut(s) 266
Hin1I GRCGYC 1 cut(s) 254
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HinfI GANTC 2 cut(s) 82, 232
HpaII CCGG 1 cut(s) 103
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 384
Hpy188I TCNGA 4 cut(s) 218, 293, 336, 443
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 1 cut(s) 384
Hpy99I CGWCG 3 cut(s) 182, 185, 253
HpyAV CCTTC 2 cut(s) 130, 352
HpyCH4III ACNGT 2 cut(s) 65, 352
HpyCH4V TGCA 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 430
HpyF3I CTNAG 1 cut(s) 32
Hsp92I GRCGYC 1 cut(s) 254
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 1 cut(s) 264
LpnPI CCDG 7 cut(s) 57, 116, 118, 252, 287, 298, 314
Lsp1109I GCAGC 3 cut(s) 156, 186, 211
MaeI CTAG 2 cut(s) 17, 281
MaeIII GTNAC 2 cut(s) 59, 121
MboII GAAGA 3 cut(s) 150, 155, 241
MhlI GDGCHC 1 cut(s) 203
MluCI AATT 1 cut(s) 238
MlyI GAGTC 2 cut(s) 76, 226
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 8 cut(s) 50, 88, 162, 280, 314, 364, 405, 408
MroXI GAANNNNTTC 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 391
MspI CCGG 1 cut(s) 103
MwoI GCNNNNNNNGC 1 cut(s) 430
NlaIII CATG 1 cut(s) 208
NmeAIII GCCGAG 2 cut(s) 66, 394
NmuCI GTSAC 1 cut(s) 59
OliI CACNNNNGTG 1 cut(s) 391
PdmI GAANNNNTTC 1 cut(s) 189
PkrI GCNGC 5 cut(s) 146, 176, 226, 435, 438
PleI GAGTC 2 cut(s) 76, 226
PpsI GAGTC 2 cut(s) 76, 226
PspFI CCCAGC 2 cut(s) 266, 312
PspPI GGNCC 2 cut(s) 214, 269
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 391
Rsr2I CGGWCCG 1 cut(s) 214
RsrII CGGWCCG 1 cut(s) 214
SatI GCNGC 5 cut(s) 145, 175, 225, 434, 437
Sau96I GGNCC 2 cut(s) 214, 269
SchI GAGTC 2 cut(s) 76, 226
SduI GDGCHC 1 cut(s) 203
SetI ASST 8 cut(s) 33, 38, 46, 61, 99, 149, 291, 363
SfcI CTRYAG 1 cut(s) 399
SinI GGWCC 1 cut(s) 214
SmiMI CAYNNNNRTG 1 cut(s) 391
Sse9I AATT 1 cut(s) 238
SsiI CCGC 3 cut(s) 212, 433, 436
SspMI CTAG 2 cut(s) 17, 281
TaaI ACNGT 2 cut(s) 65, 352
TaqI TCGA 2 cut(s) 235, 319
TasI AATT 1 cut(s) 238
TauI GCSGC 2 cut(s) 436, 439
TscAI CASTG 2 cut(s) 118, 203
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 3 cut(s) 144, 174, 224
Tsp45I GTSAC 1 cut(s) 59
TspRI CASTG 2 cut(s) 118, 203
VpaK11BI GGWCC 1 cut(s) 214
XapI RAATTY 1 cut(s) 238
XbaI TCTAGA 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 2 cut(s) 17, 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.