RLG00000004637

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000981
Physical Location & Seq
Forward (+)
61015682 .. 61016509
828 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004637

Sequence Viewer

Length: 723 bp
ATGAAGTTCTCTCTTCTCTCGATAGCAACCCTAAGGTCGCAACCGACCTTGATTGGAGGCAGCGGCGCTGCCAACTCTCAGACTTTCGGCAGAGAGGCTTCCCACCTACGTAGTGGTTCTGAGCCTTGGATTTGGAAGGGCGGCGACGCCTCTCTTTCTCCTCCCCTCCTTAGTGGCGACAATGATTGGCTTCAATGCCCCTTGAATTTATGTCAAGATCAGTTTTGTATTCTTTTTGGACCGGAGCCTCTAATGGTGGTCATCTTGGCTGCAACACGAGTTTCCTCGTCTTCATCATGGTTGTTTGGTTTAGGTGATGTGGGATGGGGACTCGATGATGCCCATCCGATCAGGTGGGATCAACCTGCTCTTATGGTGGTCGAGGATGACGATGTCGACGGCGAACAAGTTTTCTTTTCAACGGGAAAGATTGTAGCTGGGTTACAATTCGACAATGACGATGGTGATGGAGCTCTCCCTCCCATGTCGGAATTTGGTGAAGGAAGTTCTGCTAAGAAGAGCGGCTGTTTGGCTACTAGGGAGTCTAGGGTTTGCTATTGGATTCCAAGATTGTTGGGCCTGAAGTGGACTTTTGCTCCTAGTTGGACTTTTGCTCATAGATGGGGTCTTTGGGCTGAAATTTGGATGGTGGGCTCCCTATGGCTGCTTGGGTCTCTTGGTGGGCTGAGATTGATTGGGGCTCTTCATCTTGGGCTATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

26.08

Weight (kDa)

4.8

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 373
AccBSI CCGCTC 1 cut(s) 522
AccI GTMKAC 1 cut(s) 396
AciI CCGC 3 cut(s) 63, 141, 522
AclWI GGATC 1 cut(s) 366
AcsI RAATTY 3 cut(s) 205, 491, 639
AcuI CTGAAG 1 cut(s) 602
AcyI GRCGYC 1 cut(s) 147
AgsI TTSAA 3 cut(s) 194, 205, 420
AluBI AGCT 2 cut(s) 437, 473
AluI AGCT 2 cut(s) 437, 473
Alw21I GWGCWC 1 cut(s) 475
Alw26I GTCTC 1 cut(s) 678
AlwI GGATC 1 cut(s) 366
AoxI GGCC 1 cut(s) 577
ApeKI GCWGC 4 cut(s) 60, 68, 269, 664
ApoI RAATTY 3 cut(s) 205, 491, 639
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 239, 577
AsuHPI GGTGA 3 cut(s) 326, 476, 509
AvaII GGWCC 1 cut(s) 239
AxyI CCTNAGG 1 cut(s) 32
BanII GRGCYC 3 cut(s) 475, 656, 703
BauI CACGAG 1 cut(s) 276
BbsI GAAGAC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 475
BbvI GCAGC 4 cut(s) 55, 72, 256, 651
BccI CCATC 6 cut(s) 318, 351, 455, 461, 615, 640
BceAI ACGGC 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 678
BfaI CTAG 3 cut(s) 537, 546, 600
BfoI RGCGCY 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 373
BisI GCNGC 7 cut(s) 61, 64, 69, 142, 270, 523, 665
BlsI GCNGC 7 cut(s) 62, 65, 70, 143, 271, 524, 666
Bme18I GGWCC 1 cut(s) 239
BmgT120I GGNCC 2 cut(s) 239, 577
BmiI GGNNCC 2 cut(s) 246, 655
BmsI GCATC 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 282
BsaAI YACGTR 1 cut(s) 110
BsaBI GATNNNNATC 1 cut(s) 342
BsaHI GRCGYC 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 678
BsaJI CCNNGG 1 cut(s) 125
BsaWI WCCGGW 1 cut(s) 241
BsaXI ACNNNNNCTCC 2 cut(s) 580, 610
Bse21I CCTNAGG 1 cut(s) 32
Bse8I GATNNNNATC 1 cut(s) 342
BseDI CCNNGG 1 cut(s) 125
BseGI GGATG 4 cut(s) 329, 343, 391, 651
BseJI GATNNNNATC 1 cut(s) 342
BseMII CTCAG 3 cut(s) 92, 111, 677
BseRI GAGGAG 1 cut(s) 150
BseXI GCAGC 4 cut(s) 55, 72, 256, 651
BseYI CCCAGC 1 cut(s) 437
BshFI GGCC 1 cut(s) 579
BsiHKAI GWGCWC 1 cut(s) 475
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 342
BsmAI GTCTC 1 cut(s) 678
BsmFI GGGAC 1 cut(s) 342
BsnI GGCC 1 cut(s) 579
Bso31I GGTCTC 1 cut(s) 678
Bsp1286I GDGCHC 3 cut(s) 475, 656, 703
Bsp143I GATC 3 cut(s) 217, 348, 358
BspACI CCGC 3 cut(s) 63, 141, 522
BspANI GGCC 1 cut(s) 579
BspCNI CTCAG 3 cut(s) 91, 112, 678
BspLI GGNNCC 2 cut(s) 246, 655
BspMI ACCTGC 1 cut(s) 373
BspPI GGATC 1 cut(s) 366
BspQI GCTCTTC 2 cut(s) 512, 708
BspTNI GGTCTC 1 cut(s) 678
BsrBI CCGCTC 1 cut(s) 522
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 3 cut(s) 217, 348, 358
BssNI GRCGYC 1 cut(s) 147
BssSI CACGAG 1 cut(s) 276
BssT1I CCWWGG 1 cut(s) 125
Bst2BI CACGAG 1 cut(s) 276
Bst6I CTCTTC 3 cut(s) 18, 512, 708
BstACI GRCGYC 1 cut(s) 147
BstBAI YACGTR 1 cut(s) 110
BstDEI CTNAG 6 cut(s) 32, 78, 120, 170, 513, 686
BstF5I GGATG 4 cut(s) 329, 343, 391, 651
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 3 cut(s) 220, 351, 361
BstMAI GTCTC 1 cut(s) 678
BstMBI GATC 3 cut(s) 217, 348, 358
BstSNI TACGTA 1 cut(s) 110
BstV1I GCAGC 4 cut(s) 55, 72, 256, 651
BstV2I GAAGAC 1 cut(s) 282
Bsu36I CCTNAGG 1 cut(s) 32
BsuRI GGCC 1 cut(s) 579
BtsCI GGATG 4 cut(s) 329, 343, 391, 651
BveI ACCTGC 1 cut(s) 373
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 239, 577
CseI GACGC 1 cut(s) 155
CviAII CATG 2 cut(s) 297, 484
DdeI CTNAG 6 cut(s) 32, 78, 120, 170, 513, 686
DpnI GATC 3 cut(s) 219, 350, 360
DpnII GATC 3 cut(s) 217, 348, 358
Eam1104I CTCTTC 3 cut(s) 18, 512, 708
EarI CTCTTC 3 cut(s) 18, 512, 708
Ecl136II GAGCTC 1 cut(s) 473
Eco105I TACGTA 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 125
Eco24I GRGCYC 3 cut(s) 475, 656, 703
Eco31I GGTCTC 1 cut(s) 678
Eco47I GGWCC 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 473
Eco57I CTGAAG 1 cut(s) 602
Eco81I CCTNAGG 1 cut(s) 32
EcoICRI GAGCTC 1 cut(s) 473
EcoT14I CCWWGG 1 cut(s) 125
EcoT38I GRGCYC 3 cut(s) 475, 656, 703
ErhI CCWWGG 1 cut(s) 125
FaeI CATG 2 cut(s) 300, 487
FaiI YATR 6 cut(s) 211, 298, 374, 485, 618, 661
FaqI GGGAC 1 cut(s) 342
FatI CATG 2 cut(s) 296, 483
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 7 cut(s) 61, 64, 69, 142, 270, 523, 665
FokI GGATG 4 cut(s) 330, 336, 398, 658
FriOI GRGCYC 3 cut(s) 475, 656, 703
Fsp4HI GCNGC 7 cut(s) 61, 64, 69, 142, 270, 523, 665
FspBI CTAG 3 cut(s) 537, 546, 600
GlaI GCGC 1 cut(s) 67
GluI GCNGC 7 cut(s) 61, 64, 69, 142, 270, 523, 665
GsaI CCCAGC 1 cut(s) 441
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 1 cut(s) 579
HapII CCGG 1 cut(s) 242
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 2 cut(s) 300, 487
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 3 cut(s) 330, 542, 562
HpaII CCGG 1 cut(s) 242
HphI GGTGA 3 cut(s) 326, 476, 509
Hpy166II GTNNAC 2 cut(s) 397, 588
Hpy188I TCNGA 5 cut(s) 81, 121, 348, 490, 722
Hpy188III TCNNGA 2 cut(s) 19, 215
Hpy8I GTNNAC 2 cut(s) 397, 588
Hpy99I CGWCG 2 cut(s) 149, 401
HpyAV CCTTC 2 cut(s) 130, 494
HpyCH4IV ACGT 1 cut(s) 109
HpyCH4V TGCA 1 cut(s) 272
HpyF3I CTNAG 6 cut(s) 32, 78, 120, 170, 513, 686
HpySE526I ACGT 1 cut(s) 109
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 2 cut(s) 300, 487
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 3 cut(s) 217, 348, 358
LguI GCTCTTC 2 cut(s) 512, 708
LmnI GCTCC 4 cut(s) 244, 470, 601, 659
LpnPI CCDG 5 cut(s) 255, 337, 378, 423, 593
Lsp1109I GCAGC 4 cut(s) 55, 72, 256, 651
LweI GCATC 1 cut(s) 328
MaeI CTAG 3 cut(s) 537, 546, 600
MaeII ACGT 1 cut(s) 109
MaeIII GTNAC 1 cut(s) 441
MalI GATC 3 cut(s) 219, 350, 360
MbiI CCGCTC 1 cut(s) 522
MboI GATC 3 cut(s) 217, 348, 358
MboII GAAGA 4 cut(s) 5, 282, 529, 695
MhlI GDGCHC 3 cut(s) 475, 656, 703
MluCI AATT 4 cut(s) 205, 446, 491, 639
MlyI GAGTC 2 cut(s) 324, 551
MmeI TCCRAC 2 cut(s) 468, 584
MnlI CCTC 9 cut(s) 50, 88, 160, 171, 176, 258, 295, 376, 489
MspA1I CMGCKG 1 cut(s) 63
MspI CCGG 1 cut(s) 242
NdeII GATC 3 cut(s) 217, 348, 358
NlaIII CATG 2 cut(s) 300, 487
NlaIV GGNNCC 2 cut(s) 246, 655
PciSI GCTCTTC 2 cut(s) 512, 708
PcsI WCGNNNNNNNCGW 2 cut(s) 387, 456
PfeI GAWTC 1 cut(s) 562
PflFI GACNNNGTC 1 cut(s) 392
PkrI GCNGC 7 cut(s) 62, 65, 70, 143, 271, 524, 666
PleI GAGTC 2 cut(s) 324, 550
PpsI GAGTC 2 cut(s) 324, 550
Ppu21I YACGTR 1 cut(s) 110
Psp124BI GAGCTC 1 cut(s) 475
PspFI CCCAGC 1 cut(s) 437
PspN4I GGNNCC 2 cut(s) 246, 655
PspPI GGNCC 2 cut(s) 239, 577
PsyI GACNNNGTC 1 cut(s) 392
SacI GAGCTC 1 cut(s) 475
SalI GTCGAC 1 cut(s) 395
SapI GCTCTTC 2 cut(s) 512, 708
SatI GCNGC 7 cut(s) 61, 64, 69, 142, 270, 523, 665
Sau3AI GATC 3 cut(s) 217, 348, 358
Sau96I GGNCC 2 cut(s) 239, 577
SchI GAGTC 2 cut(s) 324, 551
SduI GDGCHC 3 cut(s) 475, 656, 703
SetI ASST 9 cut(s) 38, 50, 108, 112, 316, 356, 367, 439, 475
SfaNI GCATC 1 cut(s) 328
SinI GGWCC 1 cut(s) 239
SnaBI TACGTA 1 cut(s) 110
Sse9I AATT 4 cut(s) 205, 446, 491, 639
SsiI CCGC 3 cut(s) 63, 141, 522
SspMI CTAG 3 cut(s) 537, 546, 600
SstI GAGCTC 1 cut(s) 475
StyI CCWWGG 1 cut(s) 125
TaiI ACGT 1 cut(s) 112
TaqI TCGA 5 cut(s) 20, 333, 381, 396, 450
TasI AATT 4 cut(s) 205, 446, 491, 639
TauI GCSGC 3 cut(s) 66, 144, 525
TfiI GAWTC 1 cut(s) 562
TseI GCWGC 4 cut(s) 60, 68, 269, 664
TspDTI ATGAA 3 cut(s) 17, 282, 695
Tth111I GACNNNGTC 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 239
XapI RAATTY 3 cut(s) 205, 491, 639
XcmI CCANNNNNNNNNTGG 1 cut(s) 110
XmiI GTMKAC 1 cut(s) 396
XspI CTAG 3 cut(s) 537, 546, 600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.