RLG00000022244

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000981
Physical Location & Seq
Forward (+)
81901185 .. 81902254
1070 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022244

Sequence Viewer

Length: 735 bp
ATGCTCTCTCTTTCTCTCTCGAGTGCAAACCTAAGGGCGTCGCTGGTGTTTACTGACGGCGGCGCTGAAAACTTACTGACTCTCGATAGAGAGATTCTTCGACTACATAGTGGTCGTGTTCCTTGGATATGGAAGGATGGCGGTCCTGTGCTTTCTTATCCCCTAGAAGGCGACGGCGATTGGCTTCGACGGCGCCATTCATGCTTGTTTCAGGCTTGTCTCCTTGGGGGATTAAAGCCTCAGATGATGGCCAACTTGGTTGTGGTGGCACGGGGCTTCTCGTCTTCCACCTTGTCTGAGACAAGAGGCGCAGGGTTTTTCGTTGACGGCAAAGGCGGTGGCGGGGCCAGGGCGGCGACTTTCTGTGATGGTGGCGGAGATTGGATGAATCTAGATTGGCTGGGTCTCTCCTCTGCCTCAGTTGAGGATCGCTTGGCTTATGACTCGGTGGGTGCTTCCGAGGGTGGAGTTGGTGGATCTAGCTTGCTTGACGGCGGGGCATGGTTCAGGTATTGCATATATACTCCCTCTGGCGGTGAAGGGGTGAATGGCGCTGGCCTGGGCTGGTCGTGTTTGTATGGTTCGAAGATGACCATGGTGGCCACCTGTGGACTTGCTGATGGTGGGGTCTCTGGTTGGGCTGAGATTGATTGGGGCTTCTCATATTGGGTGGCTCTAATGAATGAAGATGGAGTAGAGGGTGACAAGTCATTCTCTACTCCAATTGTTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

25.63

Weight (kDa)

4.66

Isoelectric Point (pI)

41.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 192
AciI CCGC 8 cut(s) 60, 141, 336, 342, 353, 375, 495, 534
AclWI GGATC 2 cut(s) 435, 484
AcoI YGGCCR 2 cut(s) 249, 600
AcyI GRCGYC 2 cut(s) 38, 193
AfiI CCNNNNNNNGG 2 cut(s) 167, 533
AjnI CCWGG 2 cut(s) 347, 558
AluBI AGCT 1 cut(s) 483
AluI AGCT 1 cut(s) 483
Alw26I GTCTC 4 cut(s) 224, 293, 410, 634
AlwI GGATC 2 cut(s) 435, 484
Ama87I CYCGRG 1 cut(s) 19
AoxI GGCC 4 cut(s) 249, 345, 556, 600
AspLEI GCGC 4 cut(s) 65, 195, 311, 554
AspS9I GGNCC 2 cut(s) 143, 345
AsuHPI GGTGA 3 cut(s) 548, 556, 713
AsuII TTCGAA 1 cut(s) 584
AvaI CYCGRG 1 cut(s) 19
AvaII GGWCC 1 cut(s) 143
AxyI CCTNAGG 1 cut(s) 32
BalI TGGCCA 2 cut(s) 251, 602
BanI GGYRCC 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 276
BccI CCATC 5 cut(s) 131, 241, 362, 614, 683
BceAI ACGGC 5 cut(s) 73, 190, 206, 343, 508
BciT130I CCWGG 2 cut(s) 349, 560
BcoDI GTCTC 4 cut(s) 224, 293, 410, 634
BfaI CTAG 3 cut(s) 164, 392, 480
BfoI RGCGCY 3 cut(s) 66, 196, 555
BglI GCCNNNNNGGC 1 cut(s) 353
BisI GCNGC 2 cut(s) 61, 354
BlsI GCNGC 2 cut(s) 62, 355
Bme1390I CCNGG 2 cut(s) 349, 560
Bme18I GGWCC 1 cut(s) 143
BmeT110I CYCGRG 1 cut(s) 19
BmgT120I GGNCC 2 cut(s) 143, 345
BmiI GGNNCC 2 cut(s) 194, 346
BmrFI CCNGG 2 cut(s) 349, 560
BpiI GAAGAC 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 584
BsaHI GRCGYC 2 cut(s) 38, 193
BsaI GGTCTC 2 cut(s) 410, 634
BsaJI CCNNGG 6 cut(s) 122, 223, 348, 459, 559, 594
Bsc4I CCNNNNNNNGG 2 cut(s) 167, 533
Bse21I CCTNAGG 1 cut(s) 32
BseBI CCWGG 2 cut(s) 349, 560
BseDI CCNNGG 6 cut(s) 122, 223, 348, 459, 559, 594
BseGI GGATG 2 cut(s) 142, 390
BseLI CCNNNNNNNGG 2 cut(s) 167, 533
BseMII CTCAG 4 cut(s) 254, 288, 432, 633
BseRI GAGGAG 1 cut(s) 400
BseYI CCCAGC 1 cut(s) 400
BshFI GGCC 4 cut(s) 251, 347, 558, 602
BshNI GGYRCC 1 cut(s) 192
BsiHKCI CYCGRG 1 cut(s) 19
BslI CCNNNNNNNGG 2 cut(s) 167, 533
BsmAI GTCTC 4 cut(s) 224, 293, 410, 634
BsnI GGCC 4 cut(s) 251, 347, 558, 602
Bso31I GGTCTC 2 cut(s) 410, 634
BsoBI CYCGRG 1 cut(s) 19
Bsp119I TTCGAA 1 cut(s) 584
Bsp143I GATC 2 cut(s) 427, 476
Bsp19I CCATGG 1 cut(s) 594
BspACI CCGC 8 cut(s) 60, 141, 336, 342, 353, 375, 495, 534
BspANI GGCC 4 cut(s) 251, 347, 558, 602
BspCNI CTCAG 4 cut(s) 253, 289, 431, 634
BspLI GGNNCC 2 cut(s) 194, 346
BspPI GGATC 2 cut(s) 435, 484
BspT104I TTCGAA 1 cut(s) 584
BspT107I GGYRCC 1 cut(s) 192
BspTNI GGTCTC 2 cut(s) 410, 634
BssECI CCNNGG 6 cut(s) 122, 223, 348, 459, 559, 594
BssMI GATC 2 cut(s) 427, 476
BssNI GRCGYC 2 cut(s) 38, 193
BssT1I CCWWGG 3 cut(s) 122, 223, 594
Bst2UI CCWGG 2 cut(s) 349, 560
BstACI GRCGYC 2 cut(s) 38, 193
BstBI TTCGAA 1 cut(s) 584
BstC8I GCNNGC 2 cut(s) 485, 556
BstDEI CTNAG 5 cut(s) 32, 240, 297, 418, 642
BstDSI CCRYGG 1 cut(s) 594
BstF5I GGATG 2 cut(s) 142, 390
BstH2I RGCGCY 3 cut(s) 66, 196, 555
BstHHI GCGC 4 cut(s) 65, 195, 311, 554
BstKTI GATC 2 cut(s) 430, 479
BstMAI GTCTC 4 cut(s) 224, 293, 410, 634
BstMBI GATC 2 cut(s) 427, 476
BstMWI GCNNNNNNNGC 3 cut(s) 190, 201, 353
BstNI CCWGG 2 cut(s) 349, 560
BstSCI CCNGG 2 cut(s) 347, 558
BstV2I GAAGAC 1 cut(s) 276
BstX2I RGATCY 1 cut(s) 476
BstYI RGATCY 1 cut(s) 476
Bsu36I CCTNAGG 1 cut(s) 32
BsuRI GGCC 4 cut(s) 251, 347, 558, 602
BtgI CCRYGG 1 cut(s) 594
BtsCI GGATG 2 cut(s) 142, 390
Cac8I GCNNGC 2 cut(s) 485, 556
CfoI GCGC 4 cut(s) 65, 195, 311, 554
Cfr13I GGNCC 2 cut(s) 143, 345
CseI GACGC 1 cut(s) 27
CspCI CAANNNNNGTGG 2 cut(s) 319, 354
CviAII CATG 3 cut(s) 201, 501, 595
DdeI CTNAG 5 cut(s) 32, 240, 297, 418, 642
DinI GGCGCC 1 cut(s) 194
DpnI GATC 2 cut(s) 429, 478
DpnII GATC 2 cut(s) 427, 476
EaeI YGGCCR 2 cut(s) 249, 600
EciI GGCGGA 1 cut(s) 390
Eco130I CCWWGG 3 cut(s) 122, 223, 594
Eco31I GGTCTC 2 cut(s) 410, 634
Eco47I GGWCC 1 cut(s) 143
Eco81I CCTNAGG 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 19
EcoRII CCWGG 2 cut(s) 347, 558
EcoT14I CCWWGG 3 cut(s) 122, 223, 594
EgeI GGCGCC 1 cut(s) 194
EheI GGCGCC 1 cut(s) 194
ErhI CCWWGG 3 cut(s) 122, 223, 594
FaeI CATG 3 cut(s) 204, 504, 598
FatI CATG 3 cut(s) 200, 500, 594
FauI CCCGC 2 cut(s) 335, 488
Fnu4HI GCNGC 2 cut(s) 61, 354
FokI GGATG 2 cut(s) 149, 397
Fsp4HI GCNGC 2 cut(s) 61, 354
FspBI CTAG 3 cut(s) 164, 392, 480
GlaI GCGC 4 cut(s) 64, 194, 310, 553
GluI GCNGC 2 cut(s) 61, 354
GsaI CCCAGC 1 cut(s) 404
HaeII RGCGCY 3 cut(s) 66, 196, 555
HaeIII GGCC 4 cut(s) 251, 347, 558, 602
HgaI GACGC 1 cut(s) 27
HhaI GCGC 4 cut(s) 65, 195, 311, 554
Hin1I GRCGYC 2 cut(s) 38, 193
Hin1II CATG 3 cut(s) 204, 504, 598
Hin6I GCGC 4 cut(s) 63, 193, 309, 552
HinP1I GCGC 4 cut(s) 63, 193, 309, 552
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HinfI GANTC 4 cut(s) 79, 94, 388, 443
HphI GGTGA 3 cut(s) 548, 556, 713
Hpy166II GTNNAC 3 cut(s) 51, 325, 611
Hpy188I TCNGA 3 cut(s) 243, 298, 460
Hpy188III TCNNGA 3 cut(s) 19, 83, 392
Hpy8I GTNNAC 3 cut(s) 51, 325, 611
Hpy99I CGWCG 3 cut(s) 43, 176, 192
HpyAV CCTTC 3 cut(s) 127, 161, 533
HpyCH4V TGCA 2 cut(s) 26, 516
HpyF10VI GCNNNNNNNGC 3 cut(s) 190, 201, 353
HpyF3I CTNAG 5 cut(s) 32, 240, 297, 418, 642
Hsp92I GRCGYC 2 cut(s) 38, 193
Hsp92II CATG 3 cut(s) 204, 504, 598
HspAI GCGC 4 cut(s) 63, 193, 309, 552
KasI GGCGCC 1 cut(s) 192
Kzo9I GATC 2 cut(s) 427, 476
MaeI CTAG 3 cut(s) 164, 392, 480
MaeIII GTNAC 1 cut(s) 701
MalI GATC 2 cut(s) 429, 478
MboI GATC 2 cut(s) 427, 476
MboII GAAGA 4 cut(s) 89, 276, 598, 698
MfeI CAATTG 1 cut(s) 723
MflI RGATCY 1 cut(s) 476
MlsI TGGCCA 2 cut(s) 251, 602
MluCI AATT 1 cut(s) 723
MluNI TGGCCA 2 cut(s) 251, 602
Mly113I GGCGCC 1 cut(s) 193
MlyI GAGTC 2 cut(s) 73, 437
MnlI CCTC 8 cut(s) 249, 299, 418, 421, 427, 454, 538, 691
Mox20I TGGCCA 2 cut(s) 251, 602
MscI TGGCCA 2 cut(s) 251, 602
MseI TTAA 2 cut(s) 233, 733
Msp20I TGGCCA 2 cut(s) 251, 602
MspR9I CCNGG 2 cut(s) 349, 560
MunI CAATTG 1 cut(s) 723
MvaI CCWGG 2 cut(s) 349, 560
MwoI GCNNNNNNNGC 3 cut(s) 190, 201, 353
NarI GGCGCC 1 cut(s) 193
NcoI CCATGG 1 cut(s) 594
NdeII GATC 2 cut(s) 427, 476
NlaIII CATG 3 cut(s) 204, 504, 598
NlaIV GGNNCC 2 cut(s) 194, 346
NmuCI GTSAC 1 cut(s) 701
NspV TTCGAA 1 cut(s) 584
PaeR7I CTCGAG 1 cut(s) 19
PfeI GAWTC 2 cut(s) 94, 388
PkrI GCNGC 2 cut(s) 62, 355
PleI GAGTC 2 cut(s) 73, 437
PluTI GGCGCC 1 cut(s) 196
PpsI GAGTC 2 cut(s) 73, 437
Psp6I CCWGG 2 cut(s) 347, 558
PspFI CCCAGC 1 cut(s) 400
PspGI CCWGG 2 cut(s) 347, 558
PspN4I GGNNCC 2 cut(s) 194, 346
PspPI GGNCC 2 cut(s) 143, 345
PsuI RGATCY 1 cut(s) 476
SaqAI TTAA 2 cut(s) 233, 733
SatI GCNGC 2 cut(s) 61, 354
Sau3AI GATC 2 cut(s) 427, 476
Sau96I GGNCC 2 cut(s) 143, 345
SchI GAGTC 2 cut(s) 73, 437
ScrFI CCNGG 2 cut(s) 349, 560
SetI ASST 5 cut(s) 33, 293, 485, 512, 608
SfoI GGCGCC 1 cut(s) 194
Sfr274I CTCGAG 1 cut(s) 19
SfuI TTCGAA 1 cut(s) 584
SinI GGWCC 1 cut(s) 143
SlaI CTCGAG 1 cut(s) 19
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
Sse9I AATT 1 cut(s) 723
SsiI CCGC 8 cut(s) 60, 141, 336, 342, 353, 375, 495, 534
SspDI GGCGCC 1 cut(s) 192
SspMI CTAG 3 cut(s) 164, 392, 480
StyD4I CCNGG 2 cut(s) 347, 558
StyI CCWWGG 3 cut(s) 122, 223, 594
TaqI TCGA 5 cut(s) 20, 84, 100, 187, 584
TasI AATT 1 cut(s) 723
TauI GCSGC 2 cut(s) 63, 356
TfiI GAWTC 2 cut(s) 94, 388
Tru1I TTAA 2 cut(s) 233, 733
Tru9I TTAA 2 cut(s) 233, 733
TseFI GTSAC 1 cut(s) 701
Tsp45I GTSAC 1 cut(s) 701
TspDTI ATGAA 4 cut(s) 189, 401, 695, 699
VpaK11BI GGWCC 1 cut(s) 143
XbaI TCTAGA 1 cut(s) 391
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
XhoI CTCGAG 1 cut(s) 19
XspI CTAG 3 cut(s) 164, 392, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.