RchiOBHm_Chr6g0312071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000981
Physical Location & Seq
Reverse (-)
68809414 .. 68810212
799 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ28070

Sequence Viewer

Length: 477 bp
ATGGGCTCAGATCCGATCAAATGGGACTGTTCGATTTGTATGGTGGCAGAGGACAACGTGATCGATGGCGAACCGGTGATCGGAGGCGATCCAGTTTCTCCTTCGGTGGCAAAGATTGCAGTTGGGCTGCAATTACACTGTGACGGTGGTGATGGTAATCTTTCTCCTATGCTGGATTGCGGCGGCGATAGGAAAGGCTATGGCGGCAGTGGTGAGGGAGATCCTACTGAGGGCGGCGGCTCTTGGGTCGCTAGGTATGCTAGGGTTTGCTACTGGGCTCTAAGACTATTGGGCCTGGAGTGGACCTTTGCCTATGGTTGGGGCATTTGGGCTTGCTTTTGGACGGTGGACTTCCTGTGTGATGCATGGGTCTCTAGCTGGGCTAAGTTTAATCGGGGATCCTCAATTTGGGCTGCTCTAATGAATGAAGACGGAGTGGATGATGATACATCATCCTCTACTCCTAATTTTATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

16.96

Weight (kDa)

4.09

Isoelectric Point (pI)

26.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 180, 183, 204, 234, 237
AclWI GGATC 5 cut(s) 5, 83, 215, 393, 406
AfiI CCNNNNNNNGG 4 cut(s) 80, 230, 318, 408
AgeI ACCGGT 1 cut(s) 73
AjnI CCWGG 1 cut(s) 294
AluBI AGCT 1 cut(s) 378
AluI AGCT 1 cut(s) 378
Alw26I GTCTC 1 cut(s) 376
AlwI GGATC 5 cut(s) 5, 83, 215, 393, 406
AoxI GGCC 1 cut(s) 292
ApeKI GCWGC 2 cut(s) 127, 413
AsiGI ACCGGT 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 292, 303
AsuHPI GGTGA 3 cut(s) 88, 161, 224
AvaII GGWCC 1 cut(s) 303
BamHI GGATCC 1 cut(s) 398
BanII GRGCYC 2 cut(s) 8, 280
BbsI GAAGAC 1 cut(s) 435
BbvI GCAGC 2 cut(s) 114, 400
BccI CCATC 2 cut(s) 59, 146
BciT130I CCWGG 1 cut(s) 296
BcoDI GTCTC 1 cut(s) 376
BfaI CTAG 3 cut(s) 252, 261, 375
BisI GCNGC 7 cut(s) 128, 181, 184, 205, 235, 238, 414
BlsI GCNGC 7 cut(s) 129, 182, 185, 206, 236, 239, 415
Bme1390I CCNGG 1 cut(s) 296
Bme18I GGWCC 1 cut(s) 303
BmgT120I GGNCC 2 cut(s) 292, 303
BmiI GGNNCC 1 cut(s) 400
BmrFI CCNGG 1 cut(s) 296
BmrI ACTGGG 1 cut(s) 283
BmsI GCATC 1 cut(s) 352
BmuI ACTGGG 1 cut(s) 283
BpiI GAAGAC 1 cut(s) 435
BpmI CTGGAG 1 cut(s) 317
Bsa29I ATCGAT 1 cut(s) 63
BsaBI GATNNNNATC 1 cut(s) 156
BsaI GGTCTC 1 cut(s) 376
BsaWI WCCGGW 1 cut(s) 73
Bsc4I CCNNNNNNNGG 4 cut(s) 80, 230, 318, 408
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 2 cut(s) 92, 278
Bse8I GATNNNNATC 1 cut(s) 156
BseBI CCWGG 1 cut(s) 296
BseCI ATCGAT 1 cut(s) 63
BseGI GGATG 2 cut(s) 445, 452
BseJI GATNNNNATC 1 cut(s) 156
BseLI CCNNNNNNNGG 4 cut(s) 80, 230, 318, 408
BseMII CTCAG 2 cut(s) 21, 219
BseNI ACTGG 2 cut(s) 92, 278
BseXI GCAGC 2 cut(s) 114, 400
BseYI CCCAGC 1 cut(s) 378
BshFI GGCC 1 cut(s) 294
BshTI ACCGGT 1 cut(s) 73
BshVI ATCGAT 1 cut(s) 63
BsiSI CCGG 1 cut(s) 74
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 4 cut(s) 80, 230, 318, 408
BsmAI GTCTC 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 1 cut(s) 294
Bso31I GGTCTC 1 cut(s) 376
Bsp1286I GDGCHC 2 cut(s) 8, 280
Bsp143I GATC 7 cut(s) 10, 15, 60, 78, 88, 220, 398
BspACI CCGC 5 cut(s) 180, 183, 204, 234, 237
BspANI GGCC 1 cut(s) 294
BspCNI CTCAG 2 cut(s) 20, 220
BspDI ATCGAT 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 400
BspPI GGATC 5 cut(s) 5, 83, 215, 393, 406
BspTNI GGTCTC 1 cut(s) 376
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 2 cut(s) 92, 278
BssAI RCCGGY 1 cut(s) 73
BssMI GATC 7 cut(s) 10, 15, 60, 78, 88, 220, 398
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 4 cut(s) 29, 140, 146, 346
BstAPI GCANNNNNTGC 1 cut(s) 116
BstC8I GCNNGC 1 cut(s) 334
BstDEI CTNAG 4 cut(s) 7, 228, 281, 384
BstF5I GGATG 2 cut(s) 445, 452
BstKTI GATC 7 cut(s) 13, 18, 63, 81, 91, 223, 401
BstMAI GTCTC 1 cut(s) 376
BstMBI GATC 7 cut(s) 10, 15, 60, 78, 88, 220, 398
BstMWI GCNNNNNNNGC 3 cut(s) 116, 204, 257
BstNI CCWGG 1 cut(s) 296
BstSCI CCNGG 1 cut(s) 294
BstV1I GCAGC 2 cut(s) 114, 400
BstV2I GAAGAC 1 cut(s) 435
BstX2I RGATCY 3 cut(s) 10, 220, 398
BstYI RGATCY 3 cut(s) 10, 220, 398
Bsu15I ATCGAT 1 cut(s) 63
BsuRI GGCC 1 cut(s) 294
BsuTUI ATCGAT 1 cut(s) 63
BtsCI GGATG 2 cut(s) 445, 452
BtsI GCAGTG 1 cut(s) 214
BtsIMutI CAGTG 2 cut(s) 136, 214
Cac8I GCNNGC 1 cut(s) 334
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 292, 303
ClaI ATCGAT 1 cut(s) 63
CspAI ACCGGT 1 cut(s) 73
CviAII CATG 1 cut(s) 366
DdeI CTNAG 4 cut(s) 7, 228, 281, 384
DpnI GATC 7 cut(s) 12, 17, 62, 80, 90, 222, 400
DpnII GATC 7 cut(s) 10, 15, 60, 78, 88, 220, 398
Eco24I GRGCYC 2 cut(s) 8, 280
Eco31I GGTCTC 1 cut(s) 376
Eco47I GGWCC 1 cut(s) 303
EcoRII CCWGG 1 cut(s) 294
EcoT22I ATGCAT 1 cut(s) 367
EcoT38I GRGCYC 2 cut(s) 8, 280
FaeI CATG 1 cut(s) 369
FaiI YATR 6 cut(s) 41, 170, 201, 258, 315, 367
FaqI GGGAC 1 cut(s) 38
FatI CATG 1 cut(s) 365
Fnu4HI GCNGC 7 cut(s) 128, 181, 184, 205, 235, 238, 414
FokI GGATG 2 cut(s) 439, 452
FriOI GRGCYC 2 cut(s) 8, 280
Fsp4HI GCNGC 7 cut(s) 128, 181, 184, 205, 235, 238, 414
FspBI CTAG 3 cut(s) 252, 261, 375
GluI GCNGC 7 cut(s) 128, 181, 184, 205, 235, 238, 414
GsaI CCCAGC 1 cut(s) 382
GsuI CTGGAG 1 cut(s) 317
HaeIII GGCC 1 cut(s) 294
HapII CCGG 1 cut(s) 74
Hin1II CATG 1 cut(s) 369
HpaII CCGG 1 cut(s) 74
HphI GGTGA 3 cut(s) 88, 161, 224
Hpy166II GTNNAC 2 cut(s) 303, 349
Hpy188I TCNGA 3 cut(s) 10, 15, 83
Hpy8I GTNNAC 2 cut(s) 303, 349
HpyAV CCTTC 1 cut(s) 111
HpyCH4III ACNGT 4 cut(s) 29, 140, 146, 346
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 3 cut(s) 119, 130, 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 204, 257
HpyF3I CTNAG 4 cut(s) 7, 228, 281, 384
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 1 cut(s) 369
Kzo9I GATC 7 cut(s) 10, 15, 60, 78, 88, 220, 398
LpnPI CCDG 8 cut(s) 87, 105, 158, 259, 281, 308, 364, 368
Lsp1109I GCAGC 2 cut(s) 114, 400
LweI GCATC 1 cut(s) 352
MaeI CTAG 3 cut(s) 252, 261, 375
MaeII ACGT 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 140
MalI GATC 7 cut(s) 12, 17, 62, 80, 90, 222, 400
MboI GATC 7 cut(s) 10, 15, 60, 78, 88, 220, 398
MboII GAAGA 1 cut(s) 440
MflI RGATCY 3 cut(s) 10, 220, 398
MhlI GDGCHC 2 cut(s) 8, 280
MluCI AATT 3 cut(s) 131, 405, 466
MnlI CCTC 6 cut(s) 43, 77, 208, 223, 412, 466
Mph1103I ATGCAT 1 cut(s) 367
MseI TTAA 2 cut(s) 390, 475
MspI CCGG 1 cut(s) 74
MspR9I CCNGG 1 cut(s) 296
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 3 cut(s) 116, 204, 257
NdeII GATC 7 cut(s) 10, 15, 60, 78, 88, 220, 398
NlaIII CATG 1 cut(s) 369
NlaIV GGNNCC 1 cut(s) 400
NmuCI GTSAC 1 cut(s) 140
NsiI ATGCAT 1 cut(s) 367
PinAI ACCGGT 1 cut(s) 73
PkrI GCNGC 7 cut(s) 129, 182, 185, 206, 236, 239, 415
Psp6I CCWGG 1 cut(s) 294
PspFI CCCAGC 1 cut(s) 378
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 1 cut(s) 400
PspPI GGNCC 2 cut(s) 292, 303
PsuI RGATCY 3 cut(s) 10, 220, 398
SaqAI TTAA 2 cut(s) 390, 475
SatI GCNGC 7 cut(s) 128, 181, 184, 205, 235, 238, 414
Sau3AI GATC 7 cut(s) 10, 15, 60, 78, 88, 220, 398
Sau96I GGNCC 2 cut(s) 292, 303
ScrFI CCNGG 1 cut(s) 296
SduI GDGCHC 2 cut(s) 8, 280
SetI ASST 4 cut(s) 60, 257, 308, 380
SfaNI GCATC 1 cut(s) 352
SinI GGWCC 1 cut(s) 303
Sse9I AATT 3 cut(s) 131, 405, 466
SsiI CCGC 5 cut(s) 180, 183, 204, 234, 237
SspMI CTAG 3 cut(s) 252, 261, 375
StyD4I CCNGG 1 cut(s) 294
TaaI ACNGT 4 cut(s) 29, 140, 146, 346
TaiI ACGT 1 cut(s) 60
TaqI TCGA 2 cut(s) 32, 63
TasI AATT 3 cut(s) 131, 405, 466
TauI GCSGC 5 cut(s) 183, 186, 207, 237, 240
Tru1I TTAA 2 cut(s) 390, 475
Tru9I TTAA 2 cut(s) 390, 475
TscAI CASTG 2 cut(s) 143, 214
TseFI GTSAC 1 cut(s) 140
TseI GCWGC 2 cut(s) 127, 413
Tsp45I GTSAC 1 cut(s) 140
TspDTI ATGAA 2 cut(s) 437, 441
TspGWI ACGGA 1 cut(s) 447
TspRI CASTG 2 cut(s) 143, 214
VpaK11BI GGWCC 1 cut(s) 303
XspI CTAG 3 cut(s) 252, 261, 375
Zsp2I ATGCAT 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.