RLG00000004640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000981
Physical Location & Seq
Forward (+)
61045405 .. 61046258
854 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004640

Sequence Viewer

Length: 387 bp
ATGGCGGTCGGCTTGGTTGCGAAGGCGCGAGTCTTCTCACCTTCAACTTTGGTGTTTGCGTTGGGCGATGTGGGATGGGGACTCGATGATGGCAGTGGTTCAAATCTGATCGGGGGTACCTTGGATTTTGTCTCTGTTGTGGTGGTCGTGAATGATACTGGTGGATGGGGTCTCACGCCTCCGGATGGGAGGTTAGGCACCAGGATTCTGGGATTGAGCTTTCTGATCCTGCAGGATTCCGGGTTGGGAGGTAGGATTCCGGGCTGGTGCGGCGACAAGGCAAAACTCCCTACTCAGGTCGAAGGATGCAGTGGATGGACCTCTTGGGCCTTGAACTGTGCAATTCATGATGTATTTGTACTTGTCTTTGGTGGCCTTCGTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

13.22

Weight (kDa)

5.02

Isoelectric Point (pI)

24.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 116
AccB1I GGYRCC 2 cut(s) 116, 197
AccII CGCG 1 cut(s) 28
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 2 cut(s) 5, 270
AclWI GGATC 1 cut(s) 220
AfaI GTAC 2 cut(s) 118, 360
AfiI CCNNNNNNNGG 2 cut(s) 185, 295
AgsI TTSAA 3 cut(s) 45, 102, 334
AjnI CCWGG 1 cut(s) 200
AluBI AGCT 1 cut(s) 219
AluI AGCT 1 cut(s) 219
Alw26I GTCTC 2 cut(s) 136, 176
AlwI GGATC 1 cut(s) 220
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 2 cut(s) 327, 373
Asp718I GGTACC 1 cut(s) 116
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 2 cut(s) 318, 327
AsuC2I CCSGG 2 cut(s) 241, 261
AsuHPI GGTGA 1 cut(s) 30
AvaII GGWCC 1 cut(s) 318
BanI GGYRCC 2 cut(s) 116, 197
BbsI GAAGAC 1 cut(s) 25
BccI CCATC 5 cut(s) 69, 83, 159, 179, 309
BciT130I CCWGG 1 cut(s) 202
BcnI CCSGG 2 cut(s) 241, 261
BcoDI GTCTC 2 cut(s) 136, 176
BfmI CTRYAG 1 cut(s) 230
BisI GCNGC 1 cut(s) 271
BlsI GCNGC 1 cut(s) 272
Bme1390I CCNGG 3 cut(s) 202, 241, 261
Bme18I GGWCC 1 cut(s) 318
BmgT120I GGNCC 2 cut(s) 318, 327
BmiI GGNNCC 2 cut(s) 118, 199
BmrFI CCNGG 3 cut(s) 202, 241, 261
BmsI GCATC 1 cut(s) 296
BpiI GAAGAC 1 cut(s) 25
BpuMI CCSGG 2 cut(s) 241, 261
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 120
BsaWI WCCGGW 1 cut(s) 181
Bsc4I CCNNNNNNNGG 2 cut(s) 185, 295
Bse1I ACTGG 1 cut(s) 163
BseAI TCCGGA 1 cut(s) 181
BseBI CCWGG 1 cut(s) 202
BseDI CCNNGG 1 cut(s) 120
BseGI GGATG 5 cut(s) 80, 170, 190, 311, 320
BseLI CCNNNNNNNGG 2 cut(s) 185, 295
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 163
Bsh1236I CGCG 1 cut(s) 28
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 329, 375
BshNI GGYRCC 2 cut(s) 116, 197
BsiEI CGRYCG 1 cut(s) 9
BsiSI CCGG 3 cut(s) 182, 240, 260
BslFI GGGAC 1 cut(s) 93
BslI CCNNNNNNNGG 2 cut(s) 185, 295
BsmAI GTCTC 2 cut(s) 136, 176
BsmFI GGGAC 1 cut(s) 93
BsnI GGCC 2 cut(s) 329, 375
Bso31I GGTCTC 1 cut(s) 176
Bsp13I TCCGGA 1 cut(s) 181
Bsp143I GATC 2 cut(s) 108, 225
BspACI CCGC 2 cut(s) 5, 270
BspANI GGCC 2 cut(s) 329, 375
BspCNI CTCAG 1 cut(s) 307
BspEI TCCGGA 1 cut(s) 181
BspFNI CGCG 1 cut(s) 28
BspHI TCATGA 1 cut(s) 346
BspLI GGNNCC 2 cut(s) 118, 199
BspMAI CTGCAG 1 cut(s) 234
BspPI GGATC 1 cut(s) 220
BspT107I GGYRCC 2 cut(s) 116, 197
BspTNI GGTCTC 1 cut(s) 176
BsrI ACTGG 1 cut(s) 163
BssECI CCNNGG 1 cut(s) 120
BssMI GATC 2 cut(s) 108, 225
BssT1I CCWWGG 1 cut(s) 120
Bst2UI CCWGG 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 338
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 5 cut(s) 80, 170, 190, 311, 320
BstFNI CGCG 1 cut(s) 28
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 2 cut(s) 111, 228
BstMAI GTCTC 2 cut(s) 136, 176
BstMBI GATC 2 cut(s) 108, 225
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 1 cut(s) 270
BstNI CCWGG 1 cut(s) 202
BstSCI CCNGG 3 cut(s) 200, 239, 259
BstSFI CTRYAG 1 cut(s) 230
BstUI CGCG 1 cut(s) 28
BstV2I GAAGAC 1 cut(s) 25
BstXI CCANNNNNNTGG 1 cut(s) 208
BsuRI GGCC 2 cut(s) 329, 375
BtgZI GCGATG 1 cut(s) 81
BtsCI GGATG 5 cut(s) 80, 170, 190, 311, 320
BtsI GCAGTG 2 cut(s) 100, 316
BtsIMutI CAGTG 2 cut(s) 100, 316
CciI TCATGA 1 cut(s) 346
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 2 cut(s) 318, 327
Csp6I GTAC 2 cut(s) 117, 359
CviAII CATG 1 cut(s) 347
CviJI RGCY 5 cut(s) 12, 219, 264, 329, 375
CviKI_1 RGCY 5 cut(s) 12, 219, 264, 329, 375
CviQI GTAC 2 cut(s) 117, 359
DdeI CTNAG 1 cut(s) 294
DpnI GATC 2 cut(s) 110, 227
DpnII GATC 2 cut(s) 108, 225
Eco130I CCWWGG 1 cut(s) 120
Eco31I GGTCTC 1 cut(s) 176
Eco47I GGWCC 1 cut(s) 318
EcoRII CCWGG 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 120
FaeI CATG 1 cut(s) 350
FaiI YATR 1 cut(s) 348
FaqI GGGAC 1 cut(s) 93
FatI CATG 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 271
FokI GGATG 5 cut(s) 87, 177, 197, 318, 327
Fsp4HI GCNGC 1 cut(s) 271
GlaI GCGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 271
HaeIII GGCC 2 cut(s) 329, 375
HapII CCGG 3 cut(s) 182, 240, 260
HhaI GCGC 1 cut(s) 28
Hin1II CATG 1 cut(s) 350
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HinfI GANTC 5 cut(s) 30, 81, 205, 236, 256
HpaII CCGG 3 cut(s) 182, 240, 260
HphI GGTGA 1 cut(s) 30
Hpy188I TCNGA 3 cut(s) 108, 225, 386
Hpy188III TCNNGA 3 cut(s) 148, 182, 347
HpyAV CCTTC 4 cut(s) 16, 51, 296, 386
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4V TGCA 3 cut(s) 232, 309, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 270
HpyF3I CTNAG 1 cut(s) 294
Hsp92II CATG 1 cut(s) 350
HspAI GCGC 1 cut(s) 26
Kpn2I TCCGGA 1 cut(s) 181
KpnI GGTACC 1 cut(s) 120
Kzo9I GATC 2 cut(s) 108, 225
LweI GCATC 1 cut(s) 296
MalI GATC 2 cut(s) 110, 227
MboI GATC 2 cut(s) 108, 225
MboII GAAGA 1 cut(s) 25
MluCI AATT 1 cut(s) 342
MlyI GAGTC 2 cut(s) 39, 75
MnlI CCTC 4 cut(s) 183, 189, 242, 331
MroI TCCGGA 1 cut(s) 181
MspI CCGG 3 cut(s) 182, 240, 260
MspR9I CCNGG 3 cut(s) 202, 241, 261
MvaI CCWGG 1 cut(s) 202
MvnI CGCG 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 270
NciI CCSGG 2 cut(s) 241, 261
NdeII GATC 2 cut(s) 108, 225
NlaIII CATG 1 cut(s) 350
NlaIV GGNNCC 2 cut(s) 118, 199
PagI TCATGA 1 cut(s) 346
PfeI GAWTC 3 cut(s) 205, 236, 256
PkrI GCNGC 1 cut(s) 272
PleI GAGTC 2 cut(s) 38, 75
PpsI GAGTC 2 cut(s) 38, 75
Psp6I CCWGG 1 cut(s) 200
PspGI CCWGG 1 cut(s) 200
PspN4I GGNNCC 2 cut(s) 118, 199
PspPI GGNCC 2 cut(s) 318, 327
PstI CTGCAG 1 cut(s) 234
RsaI GTAC 2 cut(s) 118, 360
RsaNI GTAC 2 cut(s) 117, 359
SatI GCNGC 1 cut(s) 271
Sau3AI GATC 2 cut(s) 108, 225
Sau96I GGNCC 2 cut(s) 318, 327
SbfI CCTGCAGG 1 cut(s) 234
SchI GAGTC 2 cut(s) 39, 75
ScrFI CCNGG 3 cut(s) 202, 241, 261
SdaI CCTGCAGG 1 cut(s) 234
SetI ASST 7 cut(s) 43, 122, 194, 221, 253, 300, 323
SfaNI GCATC 1 cut(s) 296
SfcI CTRYAG 1 cut(s) 230
SinI GGWCC 1 cut(s) 318
Sse8387I CCTGCAGG 1 cut(s) 234
Sse9I AATT 1 cut(s) 342
SsiI CCGC 2 cut(s) 5, 270
StyD4I CCNGG 3 cut(s) 200, 239, 259
StyI CCWWGG 1 cut(s) 120
TaaI ACNGT 1 cut(s) 338
TaqI TCGA 2 cut(s) 84, 300
TasI AATT 1 cut(s) 342
TatI WGTACW 1 cut(s) 358
TauI GCSGC 1 cut(s) 273
TfiI GAWTC 3 cut(s) 205, 236, 256
TscAI CASTG 2 cut(s) 100, 316
TspDTI ATGAA 1 cut(s) 335
TspRI CASTG 2 cut(s) 100, 316
VpaK11BI GGWCC 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.