RLG00000001567

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000981
Physical Location & Seq
Forward (+)
17595002 .. 17595811
810 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001567

Sequence Viewer

Length: 810 bp
ATGACACTCTCTCTTTCTCTCGAGAGAGGGTTGCTAAGGTCGCACCCAACCTTGATTGGCGACGGCGGCACTGCAAATTTCCTGACTCTCGGCAGAGAGGTTTCTCAGCCACGTTGTGGCTCTGCATCTTGGATTTGGAAGGGCGGCGATGTCTCTTTTTCTTCTCCCTTCCTGGGTGACGTCATTGGTTGGCTTCGACGTCCCTTTAATATTTGTTTGGATCGGTTTGGTCTTCTGGATGGATCGGCGATTCTAATGGCAGTCATCTTGGCTGAGATGGTGCGAGTTTCCTTGACTTCAAGCTCGTCGGCGATAGGCGGAGCAGGGCATTTCGCTCCCGGTGTGTTTGGGTTAGGTGATGTGGGATGGGGACTCAGTGATGGCTGGGTTGTTCAGGCTGGAGTGGGCTCATATCCGATCAGATGGGATTGTTCGATTTGTATGGTGGCCGAGGACAACGTGATCGGTGGCGAGCCGGTTTCCCCTTCAGCGGCAAAGATTGAAGCTGGGCAGCAATTACACTGTGACGGTGGTCATGGTGATCTTTCTCCTATGCTGGATTGCGGCGATGATGGGAAAGGCTATGGCGGCAGTGGTGAGGGAGGTCCTACTGAGGGCGGCGGCTCTTGGGTCACTAGGTATGCCAGGGTTTGCTACTGGGCTCTAAGACTGTTGGGCCTGGAGTGGACCTTTGCCTATGGTTGGGGCCTTTGGCATGGGCTTGCTTTTGGACGTTGGACTTCCTGTGTGATGCACGGATCTCTAGCTGGGCTAAGTTTAATCGGGGATCCTCAATTTGGGCTGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

270

Amino Acids

28.24

Weight (kDa)

5.13

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 183, 202
AccB7I CCANNNNNTGG 1 cut(s) 116
AciI CCGC 8 cut(s) 66, 144, 318, 491, 564, 588, 618, 621
AclWI GGATC 5 cut(s) 228, 250, 766, 782, 795
AcoI YGGCCR 1 cut(s) 447
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 471
AcyI GRCGYC 2 cut(s) 180, 199
AdeI CACNNNGTG 1 cut(s) 116
AfiI CCNNNNNNNGG 6 cut(s) 116, 173, 490, 614, 702, 797
AgsI TTSAA 2 cut(s) 300, 503
AjnI CCWGG 3 cut(s) 171, 644, 678
AluBI AGCT 3 cut(s) 303, 506, 767
AluI AGCT 3 cut(s) 303, 506, 767
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 5 cut(s) 228, 250, 766, 782, 795
Ama87I CYCGRG 1 cut(s) 20
AoxI GGCC 3 cut(s) 447, 676, 706
ApeKI GCWGC 2 cut(s) 511, 802
ApoI RAATTY 1 cut(s) 76
AspS9I GGNCC 4 cut(s) 605, 676, 687, 706
AsuC2I CCSGG 1 cut(s) 339
AsuHPI GGTGA 4 cut(s) 188, 368, 551, 608
AvaI CYCGRG 1 cut(s) 20
AvaII GGWCC 2 cut(s) 605, 687
BamHI GGATCC 1 cut(s) 787
BanII GRGCYC 2 cut(s) 410, 664
BbsI GAAGAC 1 cut(s) 224
BbvI GCAGC 2 cut(s) 523, 789
BccI CCATC 6 cut(s) 233, 271, 360, 374, 417, 566
BceAI ACGGC 1 cut(s) 79
BciT130I CCWGG 3 cut(s) 173, 646, 680
BcnI CCSGG 1 cut(s) 339
BcoDI GTCTC 1 cut(s) 157
BfaI CTAG 2 cut(s) 636, 764
BisI GCNGC 9 cut(s) 67, 145, 492, 512, 565, 589, 619, 622, 803
BlsI GCNGC 9 cut(s) 68, 146, 493, 513, 566, 590, 620, 623, 804
Bme1390I CCNGG 4 cut(s) 173, 339, 646, 680
Bme18I GGWCC 2 cut(s) 605, 687
BmeT110I CYCGRG 1 cut(s) 20
BmgT120I GGNCC 4 cut(s) 605, 676, 687, 706
BmiI GGNNCC 2 cut(s) 707, 789
BmrFI CCNGG 4 cut(s) 173, 339, 646, 680
BmrI ACTGGG 1 cut(s) 667
BmsI GCATC 2 cut(s) 134, 741
BmuI ACTGGG 1 cut(s) 667
BoxI GACNNNNGTC 1 cut(s) 531
BpiI GAAGAC 1 cut(s) 224
BpmI CTGGAG 2 cut(s) 420, 701
Bpu10I CCTNAGC 1 cut(s) 35
BpuMI CCSGG 1 cut(s) 339
BsaHI GRCGYC 2 cut(s) 180, 199
BsaJI CCNNGG 3 cut(s) 172, 450, 645
Bsc4I CCNNNNNNNGG 6 cut(s) 116, 173, 490, 614, 702, 797
Bse118I RCCGGY 1 cut(s) 475
Bse1I ACTGG 1 cut(s) 662
BseBI CCWGG 3 cut(s) 173, 646, 680
BseDI CCNNGG 3 cut(s) 172, 450, 645
BseGI GGATG 2 cut(s) 244, 371
BseLI CCNNNNNNNGG 6 cut(s) 116, 173, 490, 614, 702, 797
BseMII CTCAG 4 cut(s) 119, 264, 388, 603
BseNI ACTGG 1 cut(s) 662
BseXI GCAGC 2 cut(s) 523, 789
BseYI CCCAGC 3 cut(s) 384, 506, 767
BshFI GGCC 3 cut(s) 449, 678, 708
BsiHKCI CYCGRG 1 cut(s) 20
BsiSI CCGG 2 cut(s) 339, 476
BslFI GGGAC 2 cut(s) 186, 384
BslI CCNNNNNNNGG 6 cut(s) 116, 173, 490, 614, 702, 797
BsmAI GTCTC 1 cut(s) 157
BsmFI GGGAC 2 cut(s) 186, 384
BsnI GGCC 3 cut(s) 449, 678, 708
BsoBI CYCGRG 1 cut(s) 20
Bsp1286I GDGCHC 2 cut(s) 410, 664
Bsp143I GATC 7 cut(s) 220, 242, 417, 462, 541, 758, 787
BspACI CCGC 8 cut(s) 66, 144, 318, 491, 564, 588, 618, 621
BspANI GGCC 3 cut(s) 449, 678, 708
BspCNI CTCAG 4 cut(s) 118, 265, 387, 604
BspLI GGNNCC 2 cut(s) 707, 789
BspPI GGATC 5 cut(s) 228, 250, 766, 782, 795
BsrFI RCCGGY 1 cut(s) 475
BsrI ACTGG 1 cut(s) 662
BssAI RCCGGY 1 cut(s) 475
BssECI CCNNGG 3 cut(s) 172, 450, 645
BssMI GATC 7 cut(s) 220, 242, 417, 462, 541, 758, 787
BssNI GRCGYC 2 cut(s) 180, 199
Bst2UI CCWGG 3 cut(s) 173, 646, 680
Bst4CI ACNGT 3 cut(s) 524, 530, 672
BstACI GRCGYC 2 cut(s) 180, 199
BstC8I GCNNGC 2 cut(s) 473, 723
BstDEI CTNAG 7 cut(s) 35, 105, 273, 374, 612, 665, 773
BstF5I GGATG 2 cut(s) 244, 371
BstKTI GATC 7 cut(s) 223, 245, 420, 465, 544, 761, 790
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 7 cut(s) 220, 242, 417, 462, 541, 758, 787
BstMWI GCNNNNNNNGC 3 cut(s) 40, 66, 588
BstNI CCWGG 3 cut(s) 173, 646, 680
BstPAI GACNNNNGTC 1 cut(s) 531
BstSCI CCNGG 4 cut(s) 171, 337, 644, 678
BstV1I GCAGC 2 cut(s) 523, 789
BstV2I GAAGAC 1 cut(s) 224
BstX2I RGATCY 2 cut(s) 758, 787
BstYI RGATCY 2 cut(s) 758, 787
BsuRI GGCC 3 cut(s) 449, 678, 708
BtgZI GCGATG 2 cut(s) 162, 582
BtsCI GGATG 2 cut(s) 244, 371
BtsI GCAGTG 2 cut(s) 69, 598
BtsIMutI CAGTG 4 cut(s) 69, 382, 520, 598
Cac8I GCNNGC 2 cut(s) 473, 723
Cfr10I RCCGGY 1 cut(s) 475
Cfr13I GGNCC 4 cut(s) 605, 676, 687, 706
CviAII CATG 2 cut(s) 536, 716
DdeI CTNAG 7 cut(s) 35, 105, 273, 374, 612, 665, 773
DpnI GATC 7 cut(s) 222, 244, 419, 464, 543, 760, 789
DpnII GATC 7 cut(s) 220, 242, 417, 462, 541, 758, 787
DraIII CACNNNGTG 1 cut(s) 116
EaeI YGGCCR 1 cut(s) 447
EciI GGCGGA 1 cut(s) 333
Eco24I GRGCYC 2 cut(s) 410, 664
Eco47I GGWCC 2 cut(s) 605, 687
Eco57I CTGAAG 1 cut(s) 471
Eco88I CYCGRG 1 cut(s) 20
EcoO109I RGGNCCY 2 cut(s) 605, 706
EcoRII CCWGG 3 cut(s) 171, 644, 678
EcoT38I GRGCYC 2 cut(s) 410, 664
FaeI CATG 2 cut(s) 539, 719
FaiI YATR 8 cut(s) 412, 443, 537, 554, 585, 642, 699, 717
FaqI GGGAC 2 cut(s) 186, 384
FatI CATG 2 cut(s) 535, 715
Fnu4HI GCNGC 9 cut(s) 67, 145, 492, 512, 565, 589, 619, 622, 803
FokI GGATG 2 cut(s) 251, 378
FriOI GRGCYC 2 cut(s) 410, 664
Fsp4HI GCNGC 9 cut(s) 67, 145, 492, 512, 565, 589, 619, 622, 803
FspBI CTAG 2 cut(s) 636, 764
GluI GCNGC 9 cut(s) 67, 145, 492, 512, 565, 589, 619, 622, 803
GsaI CCCAGC 3 cut(s) 388, 510, 771
GsuI CTGGAG 2 cut(s) 420, 701
HaeIII GGCC 3 cut(s) 449, 678, 708
HapII CCGG 2 cut(s) 339, 476
Hin1I GRCGYC 2 cut(s) 180, 199
Hin1II CATG 2 cut(s) 539, 719
HinfI GANTC 3 cut(s) 85, 250, 372
HpaII CCGG 2 cut(s) 339, 476
HphI GGTGA 4 cut(s) 188, 368, 551, 608
Hpy166II GTNNAC 1 cut(s) 687
Hpy188I TCNGA 2 cut(s) 417, 422
Hpy188III TCNNGA 4 cut(s) 20, 22, 82, 236
Hpy8I GTNNAC 1 cut(s) 687
Hpy99I CGWCG 3 cut(s) 65, 201, 310
HpyAV CCTTC 3 cut(s) 133, 178, 495
HpyCH4III ACNGT 3 cut(s) 524, 530, 672
HpyCH4IV ACGT 5 cut(s) 112, 180, 199, 459, 733
HpyCH4V TGCA 3 cut(s) 74, 125, 754
HpyF10VI GCNNNNNNNGC 3 cut(s) 40, 66, 588
HpyF3I CTNAG 7 cut(s) 35, 105, 273, 374, 612, 665, 773
HpySE526I ACGT 5 cut(s) 112, 180, 199, 459, 733
Hsp92I GRCGYC 2 cut(s) 180, 199
Hsp92II CATG 2 cut(s) 539, 719
Kzo9I GATC 7 cut(s) 220, 242, 417, 462, 541, 758, 787
LmnI GCTCC 2 cut(s) 320, 340
Lsp1109I GCAGC 2 cut(s) 523, 789
LweI GCATC 2 cut(s) 134, 741
MaeI CTAG 2 cut(s) 636, 764
MaeII ACGT 5 cut(s) 112, 180, 199, 459, 733
MaeIII GTNAC 3 cut(s) 176, 524, 631
MalI GATC 7 cut(s) 222, 244, 419, 464, 543, 760, 789
MboI GATC 7 cut(s) 220, 242, 417, 462, 541, 758, 787
MboII GAAGA 2 cut(s) 153, 224
MflI RGATCY 2 cut(s) 758, 787
MhlI GDGCHC 2 cut(s) 410, 664
MluCI AATT 3 cut(s) 76, 515, 794
MlyI GAGTC 2 cut(s) 79, 366
MmeI TCCRAC 1 cut(s) 716
MnlI CCTC 7 cut(s) 20, 91, 445, 592, 596, 607, 801
MseI TTAA 2 cut(s) 207, 779
MspA1I CMGCKG 1 cut(s) 491
MspI CCGG 2 cut(s) 339, 476
MspR9I CCNGG 4 cut(s) 173, 339, 646, 680
MvaI CCWGG 3 cut(s) 173, 646, 680
MwoI GCNNNNNNNGC 3 cut(s) 40, 66, 588
NciI CCSGG 1 cut(s) 339
NdeII GATC 7 cut(s) 220, 242, 417, 462, 541, 758, 787
NlaIII CATG 2 cut(s) 539, 719
NlaIV GGNNCC 2 cut(s) 707, 789
NmeAIII GCCGAG 2 cut(s) 69, 475
NmuCI GTSAC 3 cut(s) 176, 524, 631
PaeR7I CTCGAG 1 cut(s) 20
PfeI GAWTC 1 cut(s) 250
PflMI CCANNNNNTGG 1 cut(s) 116
PkrI GCNGC 9 cut(s) 68, 146, 493, 513, 566, 590, 620, 623, 804
PleI GAGTC 2 cut(s) 79, 366
PpsI GAGTC 2 cut(s) 79, 366
PpuMI RGGWCCY 1 cut(s) 605
PshAI GACNNNNGTC 1 cut(s) 531
Psp5II RGGWCCY 1 cut(s) 605
Psp6I CCWGG 3 cut(s) 171, 644, 678
PspFI CCCAGC 3 cut(s) 384, 506, 767
PspGI CCWGG 3 cut(s) 171, 644, 678
PspN4I GGNNCC 2 cut(s) 707, 789
PspPI GGNCC 4 cut(s) 605, 676, 687, 706
PspPPI RGGWCCY 1 cut(s) 605
PsuI RGATCY 2 cut(s) 758, 787
SaqAI TTAA 2 cut(s) 207, 779
SatI GCNGC 9 cut(s) 67, 145, 492, 512, 565, 589, 619, 622, 803
Sau3AI GATC 7 cut(s) 220, 242, 417, 462, 541, 758, 787
Sau96I GGNCC 4 cut(s) 605, 676, 687, 706
SchI GAGTC 2 cut(s) 79, 366
ScrFI CCNGG 4 cut(s) 173, 339, 646, 680
SduI GDGCHC 2 cut(s) 410, 664
SfaNI GCATC 2 cut(s) 134, 741
Sfr274I CTCGAG 1 cut(s) 20
SinI GGWCC 2 cut(s) 605, 687
SlaI CTCGAG 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 20
SmoI CTYRAG 1 cut(s) 20
Sse9I AATT 3 cut(s) 76, 515, 794
SsiI CCGC 8 cut(s) 66, 144, 318, 491, 564, 588, 618, 621
SspI AATATT 1 cut(s) 211
SspMI CTAG 2 cut(s) 636, 764
StyD4I CCNGG 4 cut(s) 171, 337, 644, 678
TaaI ACNGT 3 cut(s) 524, 530, 672
TaiI ACGT 5 cut(s) 115, 183, 202, 462, 736
TaqI TCGA 3 cut(s) 21, 196, 434
TasI AATT 3 cut(s) 76, 515, 794
TauI GCSGC 7 cut(s) 69, 147, 494, 567, 591, 621, 624
TfiI GAWTC 1 cut(s) 250
Tru1I TTAA 2 cut(s) 207, 779
Tru9I TTAA 2 cut(s) 207, 779
TscAI CASTG 4 cut(s) 76, 382, 527, 598
TseFI GTSAC 3 cut(s) 176, 524, 631
TseI GCWGC 2 cut(s) 511, 802
Tsp45I GTSAC 3 cut(s) 176, 524, 631
TspGWI ACGGA 1 cut(s) 771
TspRI CASTG 4 cut(s) 76, 382, 527, 598
Van91I CCANNNNNTGG 1 cut(s) 116
VpaK11BI GGWCC 2 cut(s) 605, 687
XapI RAATTY 1 cut(s) 76
XhoI CTCGAG 1 cut(s) 20
XspI CTAG 2 cut(s) 636, 764
ZraI GACGTC 2 cut(s) 181, 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.