RLG00000029202

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000981
Physical Location & Seq
Forward (+)
34424323 .. 34426337
2015 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029202

Sequence Viewer

Length: 855 bp
ATGGTCGTGGCGGCGCGGTCAGGCTTTGCTTGGACGAACCCGATCTCGGTTGGTTTTCTTGGATCTGATCTAGAGAAGGCGTTGTTTGGCTGGGGTGGTGATCCATGGCGCGGCGGTGGCGAAAGGATGATGAAGGAGGGCGGCGACGTCTCTCTTTTTTCTCACTTCCTTGGTGACATCGGGGTTTGGCTTCGACGTCCCTTTAATCTATGTTTGGATCAGTTTTGTCTTTTGGATGGATCAGATATTCTGAAGGTAACCATCTTGGCTGAGATGGCGCGAGTTTCATTGCCTTCAACCTCGTCGGCGGTAGGGAATGCAGGGCCTTTCGCTGCTGTTGTGTTTGGGTTAGGTGATGTGGGACAGGGACTCGGTGATGACTGGGTTGTTCAGGCAGACTTGGGCTCAGATTTGATCAGATGGGATTGTTTGATCTTTATGGTGGCTGAGGACGACGTGATCAGTGGTGAACCGGTTTCCCCTTTGGCTACAAAGGTTGCACCTGGGCTGCAGTTAGACTGTGACGGTGATGATGGTGTTCTTTCTACTATGCTGGACAACGACGAAGGGAAAGGATGTGGCGGCAGTGGTGGCGGTAGTCCTGCTGAGGGTGGCGGCTGTTTGGTCGCTAGGAATGCAAGGGTTTGTTTCTGGGCTCTAAGATTGTTGGGCCTGGAGTGGACTTCTGCTCATGGTTGGGGTCTTTGGGCTTGCTTTTGGACGGTGAACTTCCTGTGTGCTGTATGGGTCTCTTGCTGGGCTAAGTTTGACTGGGGATTCTCAATTTGGGCTGCTTTGATGAATGAAGATGGAGTGGATGATGATACGTCATCCCCTACTCCTAATTTCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

285

Amino Acids

30.19

Weight (kDa)

4.17

Isoelectric Point (pI)

32.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 150, 199
AccII CGCG 3 cut(s) 16, 111, 280
AciI CCGC 9 cut(s) 11, 16, 111, 114, 141, 308, 582, 594, 615
AclWI GGATC 4 cut(s) 70, 95, 225, 247
AcuI CTGAAG 1 cut(s) 272
AcyI GRCGYC 2 cut(s) 147, 196
AfiI CCNNNNNNNGG 3 cut(s) 46, 110, 608
AgeI ACCGGT 1 cut(s) 472
AgsI TTSAA 1 cut(s) 297
AjiI CACGTC 1 cut(s) 457
AjnI CCWGG 2 cut(s) 502, 672
Alw26I GTCTC 2 cut(s) 154, 754
AlwI GGATC 4 cut(s) 70, 95, 225, 247
AoxI GGCC 2 cut(s) 323, 670
ApeKI GCWGC 3 cut(s) 332, 508, 791
AsiGI ACCGGT 1 cut(s) 472
AspLEI GCGC 3 cut(s) 16, 111, 280
AspS9I GGNCC 2 cut(s) 323, 670
AsuHPI GGTGA 7 cut(s) 110, 185, 365, 386, 479, 539, 736
BanII GRGCYC 2 cut(s) 407, 658
BbvCI CCTCAGC 2 cut(s) 447, 606
BbvI GCAGC 3 cut(s) 319, 495, 778
BccI CCATC 6 cut(s) 230, 268, 269, 414, 527, 803
BciT130I CCWGG 2 cut(s) 504, 674
BclI TGATCA 2 cut(s) 414, 459
BcoDI GTCTC 2 cut(s) 154, 754
BfaI CTAG 2 cut(s) 71, 630
BfmI CTRYAG 1 cut(s) 509
BisI GCNGC 8 cut(s) 12, 112, 142, 333, 509, 583, 616, 792
BlsI GCNGC 8 cut(s) 13, 113, 143, 334, 510, 584, 617, 793
Bme1390I CCNGG 2 cut(s) 504, 674
BmgBI CACGTC 1 cut(s) 457
BmgT120I GGNCC 2 cut(s) 323, 670
BmrFI CCNGG 2 cut(s) 504, 674
BmrI ACTGGG 2 cut(s) 391, 781
BmuI ACTGGG 2 cut(s) 391, 781
BpmI CTGGAG 1 cut(s) 695
Bpu10I CCTNAGC 2 cut(s) 447, 606
BsaHI GRCGYC 2 cut(s) 147, 196
BsaI GGTCTC 1 cut(s) 754
BsaJI CCNNGG 3 cut(s) 104, 169, 503
BsaWI WCCGGW 1 cut(s) 472
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 110, 608
Bse118I RCCGGY 1 cut(s) 472
Bse1I ACTGG 2 cut(s) 386, 776
Bse3DI GCAATG 1 cut(s) 287
BseBI CCWGG 2 cut(s) 504, 674
BseDI CCNNGG 3 cut(s) 104, 169, 503
BseGI GGATG 5 cut(s) 132, 241, 581, 823, 830
BseLI CCNNNNNNNGG 3 cut(s) 46, 110, 608
BseMI GCAATG 1 cut(s) 287
BseMII CTCAG 4 cut(s) 261, 420, 438, 597
BseNI ACTGG 2 cut(s) 386, 776
BseXI GCAGC 3 cut(s) 319, 495, 778
BseYI CCCAGC 2 cut(s) 90, 756
Bsh1236I CGCG 3 cut(s) 16, 111, 280
BshFI GGCC 2 cut(s) 325, 672
BshTI ACCGGT 1 cut(s) 472
BsiSI CCGG 1 cut(s) 473
BslFI GGGAC 3 cut(s) 183, 375, 381
BslI CCNNNNNNNGG 3 cut(s) 46, 110, 608
BsmAI GTCTC 2 cut(s) 154, 754
BsmBI CGTCTC 1 cut(s) 154
BsmFI GGGAC 3 cut(s) 183, 375, 381
BsmI GAATGC 2 cut(s) 322, 640
BsnI GGCC 2 cut(s) 325, 672
Bso31I GGTCTC 1 cut(s) 754
Bsp1286I GDGCHC 2 cut(s) 407, 658
Bsp143I GATC 9 cut(s) 42, 62, 67, 100, 217, 239, 414, 432, 459
Bsp19I CCATGG 1 cut(s) 104
BspACI CCGC 9 cut(s) 11, 16, 111, 114, 141, 308, 582, 594, 615
BspANI GGCC 2 cut(s) 325, 672
BspCNI CTCAG 4 cut(s) 262, 419, 439, 598
BspFNI CGCG 3 cut(s) 16, 111, 280
BspMAI CTGCAG 1 cut(s) 513
BspPI GGATC 4 cut(s) 70, 95, 225, 247
BspTNI GGTCTC 1 cut(s) 754
BsrDI GCAATG 1 cut(s) 287
BsrFI RCCGGY 1 cut(s) 472
BsrI ACTGG 2 cut(s) 386, 776
BssAI RCCGGY 1 cut(s) 472
BssECI CCNNGG 3 cut(s) 104, 169, 503
BssMI GATC 9 cut(s) 42, 62, 67, 100, 217, 239, 414, 432, 459
BssNI GRCGYC 2 cut(s) 147, 196
BssT1I CCWWGG 2 cut(s) 104, 169
Bst2UI CCWGG 2 cut(s) 504, 674
Bst4CI ACNGT 3 cut(s) 521, 527, 724
BstACI GRCGYC 2 cut(s) 147, 196
BstC8I GCNNGC 1 cut(s) 712
BstDEI CTNAG 6 cut(s) 270, 406, 447, 606, 659, 762
BstDSI CCRYGG 1 cut(s) 104
BstEII GGTNACC 1 cut(s) 256
BstF5I GGATG 5 cut(s) 132, 241, 581, 823, 830
BstFNI CGCG 3 cut(s) 16, 111, 280
BstHHI GCGC 3 cut(s) 16, 111, 280
BstKTI GATC 9 cut(s) 45, 65, 70, 103, 220, 242, 417, 435, 462
BstMAI GTCTC 2 cut(s) 154, 754
BstMBI GATC 9 cut(s) 42, 62, 67, 100, 217, 239, 414, 432, 459
BstMWI GCNNNNNNNGC 4 cut(s) 117, 275, 591, 635
BstNI CCWGG 2 cut(s) 504, 674
BstPI GGTNACC 1 cut(s) 256
BstSCI CCNGG 2 cut(s) 502, 672
BstSFI CTRYAG 1 cut(s) 509
BstUI CGCG 3 cut(s) 16, 111, 280
BstV1I GCAGC 3 cut(s) 319, 495, 778
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BsuRI GGCC 2 cut(s) 325, 672
BtgI CCRYGG 1 cut(s) 104
BtrI CACGTC 1 cut(s) 457
BtsCI GGATG 5 cut(s) 132, 241, 581, 823, 830
BtsI GCAGTG 1 cut(s) 592
BtsIMutI CAGTG 2 cut(s) 469, 592
Cac8I GCNNGC 1 cut(s) 712
CfoI GCGC 3 cut(s) 16, 111, 280
Cfr10I RCCGGY 1 cut(s) 472
Cfr13I GGNCC 2 cut(s) 323, 670
CspAI ACCGGT 1 cut(s) 472
CviAII CATG 2 cut(s) 105, 692
DdeI CTNAG 6 cut(s) 270, 406, 447, 606, 659, 762
DpnI GATC 9 cut(s) 44, 64, 69, 102, 219, 241, 416, 434, 461
DpnII GATC 9 cut(s) 42, 62, 67, 100, 217, 239, 414, 432, 459
Eco130I CCWWGG 2 cut(s) 104, 169
Eco24I GRGCYC 2 cut(s) 407, 658
Eco31I GGTCTC 1 cut(s) 754
Eco57I CTGAAG 1 cut(s) 272
Eco91I GGTNACC 1 cut(s) 256
EcoO109I RGGNCCY 1 cut(s) 323
EcoO65I GGTNACC 1 cut(s) 256
EcoRII CCWGG 2 cut(s) 502, 672
EcoT14I CCWWGG 2 cut(s) 104, 169
EcoT38I GRGCYC 2 cut(s) 407, 658
ErhI CCWWGG 2 cut(s) 104, 169
Esp3I CGTCTC 1 cut(s) 154
FaeI CATG 2 cut(s) 108, 695
FaiI YATR 6 cut(s) 106, 211, 440, 551, 693, 745
FaqI GGGAC 3 cut(s) 183, 375, 381
FatI CATG 2 cut(s) 104, 691
FbaI TGATCA 2 cut(s) 414, 459
Fnu4HI GCNGC 8 cut(s) 12, 112, 142, 333, 509, 583, 616, 792
FokI GGATG 5 cut(s) 139, 248, 588, 817, 830
FriOI GRGCYC 2 cut(s) 407, 658
Fsp4HI GCNGC 8 cut(s) 12, 112, 142, 333, 509, 583, 616, 792
FspBI CTAG 2 cut(s) 71, 630
GlaI GCGC 3 cut(s) 15, 110, 279
GluI GCNGC 8 cut(s) 12, 112, 142, 333, 509, 583, 616, 792
GsaI CCCAGC 2 cut(s) 94, 760
GsuI CTGGAG 1 cut(s) 695
HaeIII GGCC 2 cut(s) 325, 672
HapII CCGG 1 cut(s) 473
HhaI GCGC 3 cut(s) 16, 111, 280
Hin1I GRCGYC 2 cut(s) 147, 196
Hin1II CATG 2 cut(s) 108, 695
Hin6I GCGC 3 cut(s) 14, 109, 278
HinP1I GCGC 3 cut(s) 14, 109, 278
HinfI GANTC 2 cut(s) 369, 777
HpaII CCGG 1 cut(s) 473
HphI GGTGA 7 cut(s) 110, 185, 365, 386, 479, 539, 736
Hpy166II GTNNAC 3 cut(s) 470, 681, 727
Hpy188I TCNGA 5 cut(s) 67, 244, 252, 409, 419
Hpy188III TCNNGA 1 cut(s) 71
Hpy8I GTNNAC 3 cut(s) 470, 681, 727
Hpy99I CGWCG 5 cut(s) 149, 198, 307, 458, 566
HpyAV CCTTC 5 cut(s) 70, 127, 247, 303, 560
HpyCH4III ACNGT 3 cut(s) 521, 527, 724
HpyCH4IV ACGT 4 cut(s) 147, 196, 456, 827
HpyCH4V TGCA 4 cut(s) 320, 500, 511, 638
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 275, 591, 635
HpyF3I CTNAG 6 cut(s) 270, 406, 447, 606, 659, 762
HpySE526I ACGT 4 cut(s) 147, 196, 456, 827
Hsp92I GRCGYC 2 cut(s) 147, 196
Hsp92II CATG 2 cut(s) 108, 695
HspAI GCGC 3 cut(s) 14, 109, 278
Ksp22I TGATCA 2 cut(s) 414, 459
Kzo9I GATC 9 cut(s) 42, 62, 67, 100, 217, 239, 414, 432, 459
Lsp1109I GCAGC 3 cut(s) 319, 495, 778
MaeI CTAG 2 cut(s) 71, 630
MaeII ACGT 4 cut(s) 147, 196, 456, 827
MaeIII GTNAC 3 cut(s) 173, 256, 521
MalI GATC 9 cut(s) 44, 64, 69, 102, 219, 241, 416, 434, 461
MboI GATC 9 cut(s) 42, 62, 67, 100, 217, 239, 414, 432, 459
MboII GAAGA 1 cut(s) 818
MflI RGATCY 1 cut(s) 62
MhlI GDGCHC 2 cut(s) 407, 658
MluCI AATT 2 cut(s) 783, 844
MlyI GAGTC 1 cut(s) 363
MnlI CCTC 4 cut(s) 130, 310, 442, 601
MseI TTAA 2 cut(s) 204, 853
MspI CCGG 1 cut(s) 473
MspR9I CCNGG 2 cut(s) 504, 674
Mva1269I GAATGC 2 cut(s) 322, 640
MvaI CCWGG 2 cut(s) 504, 674
MvnI CGCG 3 cut(s) 16, 111, 280
MwoI GCNNNNNNNGC 4 cut(s) 117, 275, 591, 635
NcoI CCATGG 1 cut(s) 104
NdeII GATC 9 cut(s) 42, 62, 67, 100, 217, 239, 414, 432, 459
NlaIII CATG 2 cut(s) 108, 695
NmuCI GTSAC 2 cut(s) 173, 521
PctI GAATGC 2 cut(s) 322, 640
PfeI GAWTC 1 cut(s) 777
PinAI ACCGGT 1 cut(s) 472
PkrI GCNGC 8 cut(s) 13, 113, 143, 334, 510, 584, 617, 793
PleI GAGTC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 363
Psp6I CCWGG 2 cut(s) 502, 672
PspEI GGTNACC 1 cut(s) 256
PspFI CCCAGC 2 cut(s) 90, 756
PspGI CCWGG 2 cut(s) 502, 672
PspPI GGNCC 2 cut(s) 323, 670
PstI CTGCAG 1 cut(s) 513
PsuI RGATCY 1 cut(s) 62
SaqAI TTAA 2 cut(s) 204, 853
SatI GCNGC 8 cut(s) 12, 112, 142, 333, 509, 583, 616, 792
Sau3AI GATC 9 cut(s) 42, 62, 67, 100, 217, 239, 414, 432, 459
Sau96I GGNCC 2 cut(s) 323, 670
SchI GAGTC 1 cut(s) 363
ScrFI CCNGG 2 cut(s) 504, 674
SduI GDGCHC 2 cut(s) 407, 658
SetI ASST 9 cut(s) 150, 199, 258, 302, 355, 459, 498, 505, 830
SfcI CTRYAG 1 cut(s) 509
Sse9I AATT 2 cut(s) 783, 844
SsiI CCGC 9 cut(s) 11, 16, 111, 114, 141, 308, 582, 594, 615
SspMI CTAG 2 cut(s) 71, 630
StyD4I CCNGG 2 cut(s) 502, 672
StyI CCWWGG 2 cut(s) 104, 169
TaaI ACNGT 3 cut(s) 521, 527, 724
TaiI ACGT 4 cut(s) 150, 199, 459, 830
TaqI TCGA 1 cut(s) 193
TasI AATT 2 cut(s) 783, 844
TauI GCSGC 5 cut(s) 14, 114, 144, 585, 618
TfiI GAWTC 1 cut(s) 777
Tru1I TTAA 2 cut(s) 204, 853
Tru9I TTAA 2 cut(s) 204, 853
TscAI CASTG 2 cut(s) 469, 592
TseFI GTSAC 2 cut(s) 173, 521
TseI GCWGC 3 cut(s) 332, 508, 791
Tsp45I GTSAC 2 cut(s) 173, 521
TspDTI ATGAA 5 cut(s) 146, 276, 815, 819, 838
TspRI CASTG 2 cut(s) 469, 592
XbaI TCTAGA 1 cut(s) 70
XspI CTAG 2 cut(s) 71, 630
ZraI GACGTC 2 cut(s) 148, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.