Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000981

Physical Location & Seq

Genomic Coordinates Forward (+)

60347423 .. 60348019

Gene Structure 597 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035075

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCTCTCTCCTTTTCTCTCGAGAAAAACCTTAAAACCGCAACATGCCTTACTGGGCGGTGGCAGCTCTGCAAATGTCTTGACTCTCGAAAGAGAGGTTGTCCGGCCACGTGGTGGCTCGGTAATTTGGAATTGGAAGGGTGGCGGCGCTCGTCTTTCTTCTCCCCTATTAGGCAGCGTCGGCGATTCACTTCGACGATGTCCCATGATGGCGGTCAGTTTGGCTGCGAAAACTCGAGATTTCATTTCGCCAGTGTTCAGCGGCGCTGGGCCTTTCGCTCCGGGAGAGGTCGGATGGGGTTTCGTTGATGGCTGGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.12

Weight (kDa)

10.84

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000981)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0486651 RchiOBHm_Chr4g0407841 RchiOBHm_Chr6g0312071 RchiOBHm_Chr6g0312081 RchiOBHm_Chr7g0199951
rosa_laevigata	RLG00000000594 RLG00000001567 RLG00000001832 RLG00000004637 RLG00000004640 RLG00000004833 RLG00000006679 RLG00000007158 RLG00000008694 RLG00000009075 RLG00000011512 RLG00000012673 RLG00000015109 RLG00000016150 RLG00000017316 RLG00000019776 RLG00000020284 RLG00000020334 RLG00000021424 RLG00000021718 RLG00000022244 RLG00000023069 RLG00000023643 RLG00000025130 RLG00000027919 RLG00000028123 RLG00000029202 RLG00000030087 RLG00000035075 RLG00000035197 RLG00000035409 RLG00000035824
rosa_multiflora	Rmu_sc0002613.1_g000004 Rmu_ssc0000041.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019920 Rroxscaffold_2G00115510 Rroxscaffold_3G00246460 Rroxscaffold_3G00264120 Rroxscaffold_5G00344800 Rroxscaffold_6G00403360 Rroxscaffold_7G00204700
rosa_rugosa	Rorug02G0168200 Rorug05G0236500 Rorug05G0287700 Rorug05G0492800 Rorug06G0461500 Rorug06G0495600
rosa_samantha	Rh1CG201100 Rh1DG303400 Rh2BG472700 Rh3AG275800 Rh5BG139300 Rh5CG230200 Rh5DG114300 Rh6AG509200 Rh6BG248700 Rh6CG280300 Rh6DG402300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	113
AciI	CCGC	5 cut(s)	38, 57, 144, 212, 261
AcoI	YGGCCR	1 cut(s)	104
AcvI	CACGTG	1 cut(s)	110
AdeI	CACNNNGTG	1 cut(s)	113
AfiI	CCNNNNNNNGG	2 cut(s)	113, 170
AluBI	AGCT	1 cut(s)	66
AluI	AGCT	1 cut(s)	66
Ama87I	CYCGRG	2 cut(s)	19, 234
AoxI	GGCC	2 cut(s)	104, 269
ApeKI	GCWGC	3 cut(s)	63, 174, 224
AspLEI	GCGC	2 cut(s)	149, 266
AspS9I	GGNCC	1 cut(s)	269
AsuC2I	CCSGG	1 cut(s)	282
AvaI	CYCGRG	2 cut(s)	19, 234
BbrPI	CACGTG	1 cut(s)	110
BbvI	GCAGC	3 cut(s)	75, 186, 211
BccI	CCATC	3 cut(s)	202, 288, 302
BcnI	CCSGG	1 cut(s)	282
BfoI	RGCGCY	2 cut(s)	150, 267
BisI	GCNGC	5 cut(s)	64, 145, 175, 225, 262
BlsI	GCNGC	5 cut(s)	65, 146, 176, 226, 263
Bme1390I	CCNGG	1 cut(s)	282
BmeT110I	CYCGRG	2 cut(s)	19, 234
BmgT120I	GGNCC	1 cut(s)	269
BmrFI	CCNGG	1 cut(s)	282
BmrI	ACTGGG	1 cut(s)	62
BmuI	ACTGGG	1 cut(s)	62
BpuMI	CCSGG	1 cut(s)	282
BsaAI	YACGTR	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 170
Bse1I	ACTGG	2 cut(s)	57, 251
BseGI	GGATG	1 cut(s)	299
BseLI	CCNNNNNNNGG	2 cut(s)	113, 170
BseNI	ACTGG	2 cut(s)	57, 251
BseXI	GCAGC	3 cut(s)	75, 186, 211
BseYI	CCCAGC	2 cut(s)	266, 312
BshFI	GGCC	2 cut(s)	106, 271
BsiHKCI	CYCGRG	2 cut(s)	19, 234
BsiSI	CCGG	2 cut(s)	103, 281
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	2 cut(s)	113, 170
BsmFI	GGGAC	1 cut(s)	186
BsnI	GGCC	2 cut(s)	106, 271
BsoBI	CYCGRG	2 cut(s)	19, 234
BspACI	CCGC	5 cut(s)	38, 57, 144, 212, 261
BspANI	GGCC	2 cut(s)	106, 271
BsrI	ACTGG	2 cut(s)	57, 251
BstBAI	YACGTR	1 cut(s)	110
BstF5I	GGATG	1 cut(s)	299
BstH2I	RGCGCY	2 cut(s)	150, 267
BstHHI	GCGC	2 cut(s)	149, 266
BstMWI	GCNNNNNNNGC	2 cut(s)	63, 180
BstNSI	RCATGY	1 cut(s)	47
BstSCI	CCNGG	1 cut(s)	280
BstV1I	GCAGC	3 cut(s)	75, 186, 211
BsuRI	GGCC	2 cut(s)	106, 271
BtsCI	GGATG	1 cut(s)	299
BtsIMutI	CAGTG	1 cut(s)	258
CfoI	GCGC	2 cut(s)	149, 266
Cfr13I	GGNCC	1 cut(s)	269
CseI	GACGC	1 cut(s)	166
CviAII	CATG	2 cut(s)	44, 205
CviJI	RGCY	6 cut(s)	66, 106, 117, 224, 271, 312
CviKI_1	RGCY	6 cut(s)	66, 106, 117, 224, 271, 312
DraIII	CACNNNGTG	1 cut(s)	113
EaeI	YGGCCR	1 cut(s)	104
Eco72I	CACGTG	1 cut(s)	110
Eco88I	CYCGRG	2 cut(s)	19, 234
FaeI	CATG	2 cut(s)	47, 208
FaiI	YATR	2 cut(s)	45, 206
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	2 cut(s)	43, 204
Fnu4HI	GCNGC	5 cut(s)	64, 145, 175, 225, 262
FokI	GGATG	1 cut(s)	306
Fsp4HI	GCNGC	5 cut(s)	64, 145, 175, 225, 262
GlaI	GCGC	2 cut(s)	148, 265
GluI	GCNGC	5 cut(s)	64, 145, 175, 225, 262
GsaI	CCCAGC	2 cut(s)	270, 316
HaeII	RGCGCY	2 cut(s)	150, 267
HaeIII	GGCC	2 cut(s)	106, 271
HapII	CCGG	2 cut(s)	103, 281
HgaI	GACGC	1 cut(s)	166
HhaI	GCGC	2 cut(s)	149, 266
Hin1II	CATG	2 cut(s)	47, 208
Hin6I	GCGC	2 cut(s)	147, 264
HinP1I	GCGC	2 cut(s)	147, 264
HinfI	GANTC	2 cut(s)	82, 185
HpaII	CCGG	2 cut(s)	103, 281
Hpy188I	TCNGA	1 cut(s)	293
Hpy188III	TCNNGA	5 cut(s)	19, 21, 79, 86, 236
Hpy99I	CGWCG	2 cut(s)	182, 198
HpyAV	CCTTC	1 cut(s)	130
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	2 cut(s)	63, 180
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	2 cut(s)	47, 208
HspAI	GCGC	2 cut(s)	147, 264
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	6 cut(s)	38, 116, 252, 264, 294, 298
Lsp1109I	GCAGC	3 cut(s)	75, 186, 211
MaeII	ACGT	1 cut(s)	109
MboII	GAAGA	1 cut(s)	150
MluCI	AATT	2 cut(s)	123, 130
MlyI	GAGTC	1 cut(s)	76
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	2 cut(s)	88, 280
MseI	TTAA	2 cut(s)	32, 319
MspA1I	CMGCKG	1 cut(s)	261
MspI	CCGG	2 cut(s)	103, 281
MspR9I	CCNGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	2 cut(s)	63, 180
NciI	CCSGG	1 cut(s)	282
NlaIII	CATG	2 cut(s)	47, 208
NspI	RCATGY	1 cut(s)	47
PaeR7I	CTCGAG	2 cut(s)	19, 234
PfeI	GAWTC	1 cut(s)	185
PflFI	GACNNNGTC	1 cut(s)	198
PflMI	CCANNNNNTGG	1 cut(s)	113
PfoI	TCCNGGA	1 cut(s)	280
PkrI	GCNGC	5 cut(s)	65, 146, 176, 226, 263
PleI	GAGTC	1 cut(s)	76
PmaCI	CACGTG	1 cut(s)	110
PmlI	CACGTG	1 cut(s)	110
PpsI	GAGTC	1 cut(s)	76
Ppu21I	YACGTR	1 cut(s)	110
PspCI	CACGTG	1 cut(s)	110
PspFI	CCCAGC	2 cut(s)	266, 312
PspPI	GGNCC	1 cut(s)	269
PsyI	GACNNNGTC	1 cut(s)	198
SaqAI	TTAA	2 cut(s)	32, 319
SatI	GCNGC	5 cut(s)	64, 145, 175, 225, 262
Sau96I	GGNCC	1 cut(s)	269
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	1 cut(s)	282
SetI	ASST	5 cut(s)	32, 68, 99, 112, 291
Sfr274I	CTCGAG	2 cut(s)	19, 234
SlaI	CTCGAG	2 cut(s)	19, 234
SmlI	CTYRAG	2 cut(s)	19, 234
SmoI	CTYRAG	2 cut(s)	19, 234
Sse9I	AATT	2 cut(s)	123, 130
SsiI	CCGC	5 cut(s)	38, 57, 144, 212, 261
StyD4I	CCNGG	1 cut(s)	280
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	4 cut(s)	20, 87, 193, 235
TasI	AATT	2 cut(s)	123, 130
TauI	GCSGC	2 cut(s)	147, 264
TfiI	GAWTC	1 cut(s)	185
Tru1I	TTAA	2 cut(s)	32, 319
Tru9I	TTAA	2 cut(s)	32, 319
TscAI	CASTG	1 cut(s)	258
TseI	GCWGC	3 cut(s)	63, 174, 224
TspDTI	ATGAA	1 cut(s)	232
TspRI	CASTG	1 cut(s)	258
Tth111I	GACNNNGTC	1 cut(s)	198
Van91I	CCANNNNNTGG	1 cut(s)	113
XceI	RCATGY	1 cut(s)	47
XhoI	CTCGAG	2 cut(s)	19, 234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.