Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000981

Physical Location & Seq

Genomic Coordinates Forward (+)

45813835 .. 45825524

Gene Structure 11690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG280300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGAAGGCGGATCTGCTTTCTTCCTGCCCGAGCTCTTCAGTGGCGAGGATGATGATGTGGCTCTGCTTATCGGAGAAGATTATTTATGATGGTGACGCTGCCTGGTGCAGCGATGGGCTCTACATCGTCGGTGATGTCAGCGGTCATGGTGATGAGGTCGAGCTGCCATGGGTCAGATGCGGCATCAGCGTCTTCCAGATTGGGTTGTCTCCGACTGTGGGCGTAGGCGGTGGCGTCACAAGTGGCAGGTACGGACTCGGTGGTAGCTTTTGTGCCTGTGCAGATCCTGATGCTTGGGTATGCGGCGTCTCAGTTGCTAGGGCGTCAAGGCTGGGTGGTTGGGCCCCAAACAGCAATTTGGGCCTGATGGTGGCTATTTGCACTCAATTTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

131

Amino Acids

13.63

Weight (kDa)

4.83

Isoelectric Point (pI)

29.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000981)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0486651 RchiOBHm_Chr4g0407841 RchiOBHm_Chr6g0312071 RchiOBHm_Chr6g0312081 RchiOBHm_Chr7g0199951
rosa_laevigata	RLG00000000594 RLG00000001567 RLG00000001832 RLG00000004637 RLG00000004640 RLG00000004833 RLG00000006679 RLG00000007158 RLG00000008694 RLG00000009075 RLG00000011512 RLG00000012673 RLG00000015109 RLG00000016150 RLG00000017316 RLG00000019776 RLG00000020284 RLG00000020334 RLG00000021424 RLG00000021718 RLG00000022244 RLG00000023069 RLG00000023643 RLG00000025130 RLG00000027919 RLG00000028123 RLG00000029202 RLG00000030087 RLG00000035075 RLG00000035197 RLG00000035409 RLG00000035824
rosa_multiflora	Rmu_sc0002613.1_g000004 Rmu_ssc0000041.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019920 Rroxscaffold_2G00115510 Rroxscaffold_3G00246460 Rroxscaffold_3G00264120 Rroxscaffold_5G00344800 Rroxscaffold_6G00403360 Rroxscaffold_7G00204700
rosa_rugosa	Rorug02G0168200 Rorug05G0236500 Rorug05G0287700 Rorug05G0492800 Rorug06G0461500 Rorug06G0495600
rosa_samantha	Rh1CG201100 Rh1DG303400 Rh2BG472700 Rh3AG275800 Rh5BG139300 Rh5CG230200 Rh5DG114300 Rh6AG509200 Rh6BG248700 Rh6CG280300 Rh6DG402300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	237
AciI	CCGC	5 cut(s)	8, 141, 180, 228, 303
AclWI	GGATC	2 cut(s)	18, 278
AcuI	CTGAAG	1 cut(s)	21
AcyI	GRCGYC	3 cut(s)	234, 306, 323
AfaI	GTAC	1 cut(s)	251
AfiI	CCNNNNNNNGG	2 cut(s)	218, 370
AjnI	CCWGG	1 cut(s)	101
AluBI	AGCT	3 cut(s)	33, 163, 267
AluI	AGCT	3 cut(s)	33, 163, 267
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	2 cut(s)	213, 313
AlwI	GGATC	2 cut(s)	18, 278
AlwNI	CAGNNNCTG	1 cut(s)	287
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	2 cut(s)	342, 361
ApaI	GGGCCC	1 cut(s)	346
ApeKI	GCWGC	3 cut(s)	98, 108, 163
AspS9I	GGNCC	3 cut(s)	342, 343, 361
AsuHPI	GGTGA	3 cut(s)	104, 143, 161
AvaI	CYCGRG	1 cut(s)	28
BaeGI	GKGCMC	1 cut(s)	346
BanII	GRGCYC	3 cut(s)	35, 120, 346
BbsI	GAAGAC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	3 cut(s)	85, 120, 150
BccI	CCATC	3 cut(s)	83, 107, 361
BciT130I	CCWGG	1 cut(s)	103
BcoDI	GTCTC	2 cut(s)	213, 313
BfaI	CTAG	1 cut(s)	318
BfuAI	ACCTGC	1 cut(s)	237
BisI	GCNGC	5 cut(s)	99, 109, 164, 181, 304
BlsI	GCNGC	5 cut(s)	100, 110, 165, 182, 305
Bme1390I	CCNGG	1 cut(s)	103
BmeT110I	CYCGRG	1 cut(s)	28
BmgT120I	GGNCC	3 cut(s)	342, 343, 361
BmiI	GGNNCC	2 cut(s)	344, 345
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	3 cut(s)	167, 192, 280
BpiI	GAAGAC	1 cut(s)	184
BsaHI	GRCGYC	3 cut(s)	234, 306, 323
BsaJI	CCNNGG	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 370
BseBI	CCWGG	1 cut(s)	103
BseDI	CCNNGG	1 cut(s)	167
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	2 cut(s)	218, 370
BseMII	CTCAG	1 cut(s)	324
BseSI	GKGCMC	1 cut(s)	346
BseXI	GCAGC	3 cut(s)	85, 120, 150
BseYI	CCCAGC	1 cut(s)	331
BsgI	GTGCAG	2 cut(s)	127, 300
BshFI	GGCC	2 cut(s)	344, 363
BsiHKAI	GWGCWC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	28
BslI	CCNNNNNNNGG	2 cut(s)	218, 370
BsmAI	GTCTC	2 cut(s)	213, 313
BsmBI	CGTCTC	1 cut(s)	313
BsnI	GGCC	2 cut(s)	344, 363
BsoBI	CYCGRG	1 cut(s)	28
Bsp120I	GGGCCC	1 cut(s)	342
Bsp1286I	GDGCHC	3 cut(s)	35, 120, 346
Bsp143I	GATC	2 cut(s)	10, 283
Bsp19I	CCATGG	1 cut(s)	167
BspACI	CCGC	5 cut(s)	8, 141, 180, 228, 303
BspANI	GGCC	2 cut(s)	344, 363
BspCNI	CTCAG	1 cut(s)	323
BspLI	GGNNCC	2 cut(s)	344, 345
BspMI	ACCTGC	1 cut(s)	237
BspPI	GGATC	2 cut(s)	18, 278
BspQI	GCTCTTC	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	167
BssMI	GATC	2 cut(s)	10, 283
BssNI	GRCGYC	3 cut(s)	234, 306, 323
BssT1I	CCWWGG	1 cut(s)	167
Bst2UI	CCWGG	1 cut(s)	103
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	40
BstACI	GRCGYC	3 cut(s)	234, 306, 323
BstDEI	CTNAG	1 cut(s)	310
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	1 cut(s)	54
BstKTI	GATC	2 cut(s)	13, 286
BstMAI	GTCTC	2 cut(s)	213, 313
BstMBI	GATC	2 cut(s)	10, 283
BstMWI	GCNNNNNNNGC	2 cut(s)	186, 360
BstNI	CCWGG	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	101
BstSLI	GKGCMC	1 cut(s)	346
BstV1I	GCAGC	3 cut(s)	85, 120, 150
BstV2I	GAAGAC	1 cut(s)	184
BstX2I	RGATCY	2 cut(s)	10, 283
BstYI	RGATCY	2 cut(s)	10, 283
BsuRI	GGCC	2 cut(s)	344, 363
BtgI	CCRYGG	1 cut(s)	167
BtgZI	GCGATG	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	45
BveI	ACCTGC	1 cut(s)	237
CaiI	CAGNNNCTG	1 cut(s)	287
Cfr13I	GGNCC	3 cut(s)	342, 343, 361
CseI	GACGC	5 cut(s)	104, 178, 223, 295, 312
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	2 cut(s)	146, 168
CviJI	RGCY	9 cut(s)	33, 61, 118, 163, 267, 331, 344, 363, 374
CviKI_1	RGCY	9 cut(s)	33, 61, 118, 163, 267, 331, 344, 363, 374
CviQI	GTAC	1 cut(s)	250
DdeI	CTNAG	1 cut(s)	310
DpnI	GATC	2 cut(s)	12, 285
DpnII	GATC	2 cut(s)	10, 283
Eam1104I	CTCTTC	1 cut(s)	40
EarI	CTCTTC	1 cut(s)	40
EciI	GGCGGA	1 cut(s)	23
Ecl136II	GAGCTC	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	167
Eco24I	GRGCYC	3 cut(s)	35, 120, 346
Eco53kI	GAGCTC	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	21
Eco88I	CYCGRG	1 cut(s)	28
EcoICRI	GAGCTC	1 cut(s)	33
EcoO109I	RGGNCCY	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	167
EcoT38I	GRGCYC	3 cut(s)	35, 120, 346
ErhI	CCWWGG	1 cut(s)	167
Esp3I	CGTCTC	1 cut(s)	313
FaeI	CATG	2 cut(s)	149, 171
FaiI	YATR	4 cut(s)	87, 147, 169, 301
FatI	CATG	2 cut(s)	145, 167
Fnu4HI	GCNGC	5 cut(s)	99, 109, 164, 181, 304
FokI	GGATG	1 cut(s)	61
FriOI	GRGCYC	3 cut(s)	35, 120, 346
Fsp4HI	GCNGC	5 cut(s)	99, 109, 164, 181, 304
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	5 cut(s)	99, 109, 164, 181, 304
GsaI	CCCAGC	1 cut(s)	335
HaeIII	GGCC	2 cut(s)	344, 363
HgaI	GACGC	5 cut(s)	104, 178, 223, 295, 312
Hin1I	GRCGYC	3 cut(s)	234, 306, 323
Hin1II	CATG	2 cut(s)	149, 171
HinfI	GANTC	1 cut(s)	255
HphI	GGTGA	3 cut(s)	104, 143, 161
Hpy188I	TCNGA	3 cut(s)	73, 176, 213
Hpy188III	TCNNGA	2 cut(s)	196, 287
Hpy99I	CGWCG	1 cut(s)	131
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	3 cut(s)	108, 281, 381
HpyF10VI	GCNNNNNNNGC	2 cut(s)	186, 360
HpyF3I	CTNAG	1 cut(s)	310
Hsp92I	GRCGYC	3 cut(s)	234, 306, 323
Hsp92II	CATG	2 cut(s)	149, 171
Kzo9I	GATC	2 cut(s)	10, 283
LguI	GCTCTTC	1 cut(s)	40
LpnPI	CCDG	9 cut(s)	37, 88, 115, 209, 232, 289, 300, 317, 377
Lsp1109I	GCAGC	3 cut(s)	85, 120, 150
LweI	GCATC	3 cut(s)	167, 192, 280
MaeI	CTAG	1 cut(s)	318
MaeIII	GTNAC	2 cut(s)	92, 235
MalI	GATC	2 cut(s)	12, 285
MboI	GATC	2 cut(s)	10, 283
MboII	GAAGA	4 cut(s)	12, 27, 88, 184
MflI	RGATCY	2 cut(s)	10, 283
MhlI	GDGCHC	3 cut(s)	35, 120, 346
MluCI	AATT	2 cut(s)	355, 386
MlyI	GAGTC	1 cut(s)	249
MmeI	TCCRAC	1 cut(s)	236
MnlI	CCTC	2 cut(s)	39, 148
MseI	TTAA	1 cut(s)	390
MslI	CAYNNNNRTG	1 cut(s)	150
MspA1I	CMGCKG	1 cut(s)	141
MspR9I	CCNGG	1 cut(s)	103
MvaI	CCWGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	186, 360
NcoI	CCATGG	1 cut(s)	167
NdeII	GATC	2 cut(s)	10, 283
NlaIII	CATG	2 cut(s)	149, 171
NlaIV	GGNNCC	2 cut(s)	344, 345
NmuCI	GTSAC	2 cut(s)	92, 235
PciSI	GCTCTTC	1 cut(s)	40
PkrI	GCNGC	5 cut(s)	100, 110, 165, 182, 305
PleI	GAGTC	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	249
Psp124BI	GAGCTC	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	101
PspFI	CCCAGC	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	344, 345
PspOMI	GGGCCC	1 cut(s)	342
PspPI	GGNCC	3 cut(s)	342, 343, 361
PstNI	CAGNNNCTG	1 cut(s)	287
PsuI	RGATCY	2 cut(s)	10, 283
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
RseI	CAYNNNNRTG	1 cut(s)	150
SacI	GAGCTC	1 cut(s)	35
SapI	GCTCTTC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	390
SatI	GCNGC	5 cut(s)	99, 109, 164, 181, 304
Sau3AI	GATC	2 cut(s)	10, 283
Sau96I	GGNCC	3 cut(s)	342, 343, 361
SchI	GAGTC	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	103
SduI	GDGCHC	3 cut(s)	35, 120, 346
SetI	ASST	5 cut(s)	35, 159, 165, 251, 269
SfaNI	GCATC	3 cut(s)	167, 192, 280
SmiMI	CAYNNNNRTG	1 cut(s)	150
Sse9I	AATT	2 cut(s)	355, 386
SsiI	CCGC	5 cut(s)	8, 141, 180, 228, 303
SspMI	CTAG	1 cut(s)	318
SstI	GAGCTC	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	101
StyI	CCWWGG	1 cut(s)	167
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	1 cut(s)	159
TasI	AATT	2 cut(s)	355, 386
TauI	GCSGC	2 cut(s)	183, 306
Tru1I	TTAA	1 cut(s)	390
Tru9I	TTAA	1 cut(s)	390
TscAI	CASTG	1 cut(s)	45
TseFI	GTSAC	2 cut(s)	92, 235
TseI	GCWGC	3 cut(s)	98, 108, 163
Tsp45I	GTSAC	2 cut(s)	92, 235
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	267
TspRI	CASTG	1 cut(s)	45
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.