RLG00000015109

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000981
Physical Location & Seq
Reverse (-)
61900648 .. 61901082
435 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015109

Sequence Viewer

Length: 321 bp
ATGATGTTAGGTTTGGATCGGGTTCGTCCTTTTGGTGGATCGAAGCCTCTGATGGAGGTCAACTTGGCTGCGAAGGCGCGAGACTTCTCACCTTCAATATCATCGGTGTTAGGCGGAGCAGGGCCTTTTGCTTTGGGCGATGTCGGATGGGGACTCGATCATGGCAAGGTTGCTCAAGTCTATCTAGGTTCAGATTCAATCGGGTGCACCTTGGCTTCTGTCTCTGGGAACATCGGCTTGGATTTGGCAGGCAGCGGTGGTACAGTAGCAGTGCTGAACCAGAAGCAATTGTTGCAAGATGGCAACGATACCTTGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

10.67

Weight (kDa)

4.98

Isoelectric Point (pI)

30.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 79
AciI CCGC 2 cut(s) 114, 255
AclWI GGATC 2 cut(s) 24, 46
AfaI GTAC 1 cut(s) 262
AfiI CCNNNNNNNGG 1 cut(s) 35
AgsI TTSAA 2 cut(s) 96, 198
AjuI GAANNNNNNNTTGG 2 cut(s) 221, 253
Alw21I GWGCWC 1 cut(s) 209
Alw26I GTCTC 2 cut(s) 75, 226
Alw44I GTGCAC 1 cut(s) 205
AlwI GGATC 2 cut(s) 24, 46
AoxI GGCC 1 cut(s) 122
ApaLI GTGCAC 1 cut(s) 205
ApeKI GCWGC 2 cut(s) 68, 252
AspLEI GCGC 1 cut(s) 79
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 1 cut(s) 81
BaeGI GKGCMC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 209
BbvI GCAGC 2 cut(s) 55, 264
BccI CCATC 3 cut(s) 46, 141, 293
BcoDI GTCTC 2 cut(s) 75, 226
BfaI CTAG 1 cut(s) 185
BisI GCNGC 2 cut(s) 69, 253
BlsI GCNGC 2 cut(s) 70, 254
BmgT120I GGNCC 1 cut(s) 122
BpuEI CTTGAG 1 cut(s) 159
BsaJI CCNNGG 2 cut(s) 210, 312
Bsc4I CCNNNNNNNGG 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 210, 312
BseGI GGATG 1 cut(s) 152
BseLI CCNNNNNNNGG 1 cut(s) 35
BseSI GKGCMC 1 cut(s) 209
BseXI GCAGC 2 cut(s) 55, 264
Bsh1236I CGCG 1 cut(s) 79
BshFI GGCC 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 209
BslFI GGGAC 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 35
BsmAI GTCTC 2 cut(s) 75, 226
BsmFI GGGAC 1 cut(s) 165
BsnI GGCC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 209
Bsp143I GATC 3 cut(s) 16, 38, 157
BspACI CCGC 2 cut(s) 114, 255
BspANI GGCC 1 cut(s) 124
BspFNI CGCG 1 cut(s) 79
BspPI GGATC 2 cut(s) 24, 46
BssECI CCNNGG 2 cut(s) 210, 312
BssMI GATC 3 cut(s) 16, 38, 157
BssT1I CCWWGG 2 cut(s) 210, 312
Bst4CI ACNGT 1 cut(s) 265
BstAPI GCANNNNNTGC 1 cut(s) 292
BstC8I GCNNGC 1 cut(s) 250
BstF5I GGATG 1 cut(s) 152
BstFNI CGCG 1 cut(s) 79
BstHHI GCGC 1 cut(s) 79
BstKTI GATC 3 cut(s) 19, 41, 160
BstMAI GTCTC 2 cut(s) 75, 226
BstMBI GATC 3 cut(s) 16, 38, 157
BstMWI GCNNNNNNNGC 2 cut(s) 74, 292
BstSLI GKGCMC 1 cut(s) 209
BstUI CGCG 1 cut(s) 79
BstV1I GCAGC 2 cut(s) 55, 264
BsuRI GGCC 1 cut(s) 124
BtgZI GCGATG 1 cut(s) 153
BtsCI GGATG 1 cut(s) 152
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 1 cut(s) 276
Cac8I GCNNGC 1 cut(s) 250
CfoI GCGC 1 cut(s) 79
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 261
CviAII CATG 2 cut(s) 161, 318
CviJI RGCY 5 cut(s) 46, 68, 124, 215, 237
CviKI_1 RGCY 5 cut(s) 46, 68, 124, 215, 237
CviQI GTAC 1 cut(s) 261
DpnI GATC 3 cut(s) 18, 40, 159
DpnII GATC 3 cut(s) 16, 38, 157
EciI GGCGGA 1 cut(s) 129
Eco130I CCWWGG 2 cut(s) 210, 312
EcoO109I RGGNCCY 1 cut(s) 122
EcoT14I CCWWGG 2 cut(s) 210, 312
ErhI CCWWGG 2 cut(s) 210, 312
FaeI CATG 2 cut(s) 164, 321
FaiI YATR 2 cut(s) 162, 319
FaqI GGGAC 1 cut(s) 165
FatI CATG 2 cut(s) 160, 317
Fnu4HI GCNGC 2 cut(s) 69, 253
FokI GGATG 1 cut(s) 159
Fsp4HI GCNGC 2 cut(s) 69, 253
FspBI CTAG 1 cut(s) 185
GlaI GCGC 1 cut(s) 78
GluI GCNGC 2 cut(s) 69, 253
HaeIII GGCC 1 cut(s) 124
HhaI GCGC 1 cut(s) 79
Hin1II CATG 2 cut(s) 164, 321
Hin6I GCGC 1 cut(s) 77
HinP1I GCGC 1 cut(s) 77
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 2 cut(s) 153, 194
HphI GGTGA 1 cut(s) 81
Hpy166II GTNNAC 2 cut(s) 61, 207
Hpy188I TCNGA 3 cut(s) 51, 146, 193
Hpy8I GTNNAC 2 cut(s) 61, 207
HpyAV CCTTC 2 cut(s) 67, 102
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 207, 295
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 292
Hsp92II CATG 2 cut(s) 164, 321
HspAI GCGC 1 cut(s) 77
Kzo9I GATC 3 cut(s) 16, 38, 157
LmnI GCTCC 1 cut(s) 116
LpnPI CCDG 4 cut(s) 105, 210, 234, 293
Lsp1109I GCAGC 2 cut(s) 55, 264
MaeI CTAG 1 cut(s) 185
MalI GATC 3 cut(s) 18, 40, 159
MboI GATC 3 cut(s) 16, 38, 157
MfeI CAATTG 1 cut(s) 287
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 1 cut(s) 287
MlyI GAGTC 1 cut(s) 147
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 2 cut(s) 49, 57
MspA1I CMGCKG 1 cut(s) 255
MunI CAATTG 1 cut(s) 287
MvnI CGCG 1 cut(s) 79
MwoI GCNNNNNNNGC 2 cut(s) 74, 292
NdeII GATC 3 cut(s) 16, 38, 157
NlaIII CATG 2 cut(s) 164, 321
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 2 cut(s) 70, 254
PleI GAGTC 1 cut(s) 147
PpsI GAGTC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 122
RsaI GTAC 1 cut(s) 262
RsaNI GTAC 1 cut(s) 261
SatI GCNGC 2 cut(s) 69, 253
Sau3AI GATC 3 cut(s) 16, 38, 157
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 1 cut(s) 147
SduI GDGCHC 1 cut(s) 209
SetI ASST 7 cut(s) 13, 60, 94, 171, 190, 212, 314
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
Sse9I AATT 1 cut(s) 287
SsiI CCGC 2 cut(s) 114, 255
SspMI CTAG 1 cut(s) 185
StyI CCWWGG 2 cut(s) 210, 312
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 2 cut(s) 41, 156
TasI AATT 1 cut(s) 287
TfiI GAWTC 1 cut(s) 194
TscAI CASTG 1 cut(s) 276
TseI GCWGC 2 cut(s) 68, 252
TspRI CASTG 1 cut(s) 276
VneI GTGCAC 1 cut(s) 205
XspI CTAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.