RLG00000035197

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000981
Physical Location & Seq
Forward (+)
62689522 .. 62690283
762 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035197

Sequence Viewer

Length: 633 bp
ATGCTCTCTCTTTCTCTCTGGAGAGCAACCTTAAGGTCGCAACCGGCCTTGATTGGCAGCGATGGAGCTGCAAATTCCTTGACTCTCGGCAGAGAGGTTTCCCGGCTACTCAGTGGCTCTGTAATTTGGATTTGGAAGGGAGGCAACGCTTCTCTTTCTTCTCCCCTACTTGACGGCGACAGCGATTGGCTTCGACGGTGTCTCATGATGTTAGGTCTAGATCGGGTTCGTCCTTTTGGTGGACCGAAGCCTCTGATGGCGGTCAGCTTGGATGCGAAAGCGAGAGACCTCTCGCCTTCAATCTCATGGATGTTATGCGGAGTTGGGCCTTTTGTTTTGGGTAATGGGGCCGCGGCGTCTTGGTTGGGATCTATTTCTCTTGATATCAAGGCAGGCGGCGGCGGTGCAGTGGCAACGCTGAGCGTGCTTAGGATTTGGCTAGCAATGCAGGCATTGGGACAGGTTAAGGGTATTGTTGCTTTTGGTGGAGTTAGGTACGGTGGTGGTAGTAAGGTTTTCGACGGTGGCGGGGAGGTAGCCTTGGTGGAGTCTGCTAGGGTTTCTCCAACTTGGGCTAATTGGGCTCATAAGTGGCTATTGGGCTTCTTCTTCTTTTGTTTAAGGAGAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

22.2

Weight (kDa)

10.21

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 353
AciI CCGC 8 cut(s) 260, 318, 351, 353, 396, 399, 402, 528
AclWI GGATC 1 cut(s) 376
AcsI RAATTY 1 cut(s) 73
AcyI GRCGYC 1 cut(s) 356
AfaI GTAC 1 cut(s) 497
AfiI CCNNNNNNNGG 1 cut(s) 239
AflII CTTAAG 1 cut(s) 31
AgsI TTSAA 1 cut(s) 300
AluBI AGCT 2 cut(s) 68, 267
AluI AGCT 2 cut(s) 68, 267
Alw26I GTCTC 2 cut(s) 206, 279
AlwI GGATC 1 cut(s) 376
AoxI GGCC 3 cut(s) 45, 326, 348
ApeKI GCWGC 2 cut(s) 57, 68
ApoI RAATTY 1 cut(s) 73
AspS9I GGNCC 3 cut(s) 242, 326, 348
AsuC2I CCSGG 1 cut(s) 103
AsuNHI GCTAGC 1 cut(s) 439
AvaII GGWCC 1 cut(s) 242
BaeI ACNNNNGTAYC 2 cut(s) 487, 520
BanII GRGCYC 1 cut(s) 586
BbvI GCAGC 2 cut(s) 55, 69
BccI CCATC 2 cut(s) 56, 250
BceAI ACGGC 1 cut(s) 190
BcgI CGANNNNNNTGC 2 cut(s) 50, 84
BcnI CCSGG 1 cut(s) 103
BcoDI GTCTC 2 cut(s) 206, 279
BfaI CTAG 3 cut(s) 218, 440, 555
BfrI CTTAAG 1 cut(s) 31
BisI GCNGC 6 cut(s) 58, 69, 351, 354, 397, 400
BlpI GCTNAGC 1 cut(s) 419
BlsI GCNGC 6 cut(s) 59, 70, 352, 355, 398, 401
Bme1390I CCNGG 1 cut(s) 103
Bme18I GGWCC 1 cut(s) 242
BmgT120I GGNCC 3 cut(s) 242, 326, 348
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 1 cut(s) 103
BmsI GCATC 1 cut(s) 262
BmtI GCTAGC 1 cut(s) 443
BpmI CTGGAG 1 cut(s) 40
Bpu10I CCTNAGC 1 cut(s) 428
Bpu1102I GCTNAGC 1 cut(s) 419
BpuMI CCSGG 1 cut(s) 103
BsaHI GRCGYC 1 cut(s) 356
BsaI GGTCTC 1 cut(s) 279
BsaJI CCNNGG 2 cut(s) 351, 540
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse118I RCCGGY 1 cut(s) 43
Bse3DI GCAATG 1 cut(s) 450
BseDI CCNNGG 2 cut(s) 351, 540
BseGI GGATG 2 cut(s) 277, 315
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMI GCAATG 1 cut(s) 450
BseMII CTCAG 2 cut(s) 124, 410
BseXI GCAGC 2 cut(s) 55, 69
BsgI GTGCAG 1 cut(s) 426
Bsh1236I CGCG 1 cut(s) 353
BshFI GGCC 3 cut(s) 47, 328, 350
BsiSI CCGG 2 cut(s) 44, 103
BslFI GGGAC 1 cut(s) 471
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 2 cut(s) 206, 279
BsmFI GGGAC 1 cut(s) 471
BsnI GGCC 3 cut(s) 47, 328, 350
Bso31I GGTCTC 1 cut(s) 279
Bsp1286I GDGCHC 1 cut(s) 586
Bsp143I GATC 2 cut(s) 220, 368
Bsp1720I GCTNAGC 1 cut(s) 419
BspACI CCGC 8 cut(s) 260, 318, 351, 353, 396, 399, 402, 528
BspANI GGCC 3 cut(s) 47, 328, 350
BspCNI CTCAG 2 cut(s) 123, 411
BspFNI CGCG 1 cut(s) 353
BspHI TCATGA 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 349
BspOI GCTAGC 1 cut(s) 443
BspPI GGATC 1 cut(s) 376
BspTI CTTAAG 1 cut(s) 31
BspTNI GGTCTC 1 cut(s) 279
BsrDI GCAATG 1 cut(s) 450
BsrFI RCCGGY 1 cut(s) 43
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 351, 540
BssMI GATC 2 cut(s) 220, 368
BssNI GRCGYC 1 cut(s) 356
BssT1I CCWWGG 1 cut(s) 540
Bst4CI ACNGT 3 cut(s) 198, 500, 524
BstACI GRCGYC 1 cut(s) 356
BstAFI CTTAAG 1 cut(s) 31
BstC8I GCNNGC 4 cut(s) 394, 425, 441, 450
BstDEI CTNAG 3 cut(s) 110, 419, 428
BstDSI CCRYGG 1 cut(s) 351
BstF5I GGATG 2 cut(s) 277, 315
BstFNI CGCG 1 cut(s) 353
BstKTI GATC 2 cut(s) 223, 371
BstMAI GTCTC 2 cut(s) 206, 279
BstMBI GATC 2 cut(s) 220, 368
BstMWI GCNNNNNNNGC 4 cut(s) 424, 445, 449, 581
BstSCI CCNGG 1 cut(s) 101
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 2 cut(s) 55, 69
BstX2I RGATCY 1 cut(s) 368
BstYI RGATCY 1 cut(s) 368
BsuRI GGCC 3 cut(s) 47, 328, 350
BtgI CCRYGG 1 cut(s) 351
BtgZI GCGATG 1 cut(s) 75
BtsCI GGATG 2 cut(s) 277, 315
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 2 cut(s) 118, 414
Cac8I GCNNGC 4 cut(s) 394, 425, 441, 450
CciI TCATGA 1 cut(s) 204
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 3 cut(s) 242, 326, 348
Cfr42I CCGCGG 1 cut(s) 354
CseI GACGC 1 cut(s) 345
Csp6I GTAC 1 cut(s) 496
CviAII CATG 2 cut(s) 205, 306
CviQI GTAC 1 cut(s) 496
DdeI CTNAG 3 cut(s) 110, 419, 428
DpnI GATC 2 cut(s) 222, 370
DpnII GATC 2 cut(s) 220, 368
Eco130I CCWWGG 1 cut(s) 540
Eco24I GRGCYC 1 cut(s) 586
Eco31I GGTCTC 1 cut(s) 279
Eco32I GATATC 1 cut(s) 385
Eco47I GGWCC 1 cut(s) 242
EcoRV GATATC 1 cut(s) 385
EcoT14I CCWWGG 1 cut(s) 540
EcoT38I GRGCYC 1 cut(s) 586
ErhI CCWWGG 1 cut(s) 540
FaeI CATG 2 cut(s) 208, 309
FaiI YATR 5 cut(s) 206, 307, 316, 588, 631
FaqI GGGAC 1 cut(s) 471
FatI CATG 2 cut(s) 204, 305
FauI CCCGC 1 cut(s) 521
Fnu4HI GCNGC 6 cut(s) 58, 69, 351, 354, 397, 400
FokI GGATG 2 cut(s) 284, 322
FriOI GRGCYC 1 cut(s) 586
Fsp4HI GCNGC 6 cut(s) 58, 69, 351, 354, 397, 400
FspBI CTAG 3 cut(s) 218, 440, 555
GluI GCNGC 6 cut(s) 58, 69, 351, 354, 397, 400
GsuI CTGGAG 1 cut(s) 40
HaeIII GGCC 3 cut(s) 47, 328, 350
HapII CCGG 2 cut(s) 44, 103
HgaI GACGC 1 cut(s) 345
Hin1I GRCGYC 1 cut(s) 356
Hin1II CATG 2 cut(s) 208, 309
HinfI GANTC 2 cut(s) 82, 548
HpaII CCGG 2 cut(s) 44, 103
Hpy166II GTNNAC 1 cut(s) 242
Hpy188I TCNGA 1 cut(s) 255
Hpy188III TCNNGA 4 cut(s) 19, 205, 218, 380
Hpy8I GTNNAC 1 cut(s) 242
Hpy99I CGWCG 2 cut(s) 198, 524
HpyAV CCTTC 2 cut(s) 130, 306
HpyCH4III ACNGT 3 cut(s) 198, 500, 524
HpyCH4V TGCA 3 cut(s) 71, 407, 448
HpyF10VI GCNNNNNNNGC 4 cut(s) 424, 445, 449, 581
HpyF3I CTNAG 3 cut(s) 110, 419, 428
Hsp92I GRCGYC 1 cut(s) 356
Hsp92II CATG 2 cut(s) 208, 309
KspI CCGCGG 1 cut(s) 354
Kzo9I GATC 2 cut(s) 220, 368
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 6 cut(s) 4, 57, 116, 378, 434, 446
Lsp1109I GCAGC 2 cut(s) 55, 69
LweI GCATC 1 cut(s) 262
MaeI CTAG 3 cut(s) 218, 440, 555
MalI GATC 2 cut(s) 222, 370
MboI GATC 2 cut(s) 220, 368
MboII GAAGA 3 cut(s) 150, 598, 601
MflI RGATCY 1 cut(s) 368
MhlI GDGCHC 1 cut(s) 586
MluCI AATT 3 cut(s) 73, 123, 577
MlyI GAGTC 2 cut(s) 76, 557
MmeI TCCRAC 1 cut(s) 590
MnlI CCTC 5 cut(s) 88, 134, 261, 299, 526
MseI TTAA 3 cut(s) 32, 465, 620
MspA1I CMGCKG 1 cut(s) 353
MspCI CTTAAG 1 cut(s) 31
MspI CCGG 2 cut(s) 44, 103
MspR9I CCNGG 1 cut(s) 103
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 4 cut(s) 424, 445, 449, 581
NciI CCSGG 1 cut(s) 103
NdeII GATC 2 cut(s) 220, 368
NheI GCTAGC 1 cut(s) 439
NlaIII CATG 2 cut(s) 208, 309
NlaIV GGNNCC 1 cut(s) 349
NmeAIII GCCGAG 1 cut(s) 66
PagI TCATGA 1 cut(s) 204
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PflFI GACNNNGTC 1 cut(s) 198
PkrI GCNGC 6 cut(s) 59, 70, 352, 355, 398, 401
PleI GAGTC 2 cut(s) 76, 556
PpsI GAGTC 2 cut(s) 76, 556
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 3 cut(s) 242, 326, 348
PsuI RGATCY 1 cut(s) 368
PsyI GACNNNGTC 1 cut(s) 198
RsaI GTAC 1 cut(s) 497
RsaNI GTAC 1 cut(s) 496
SacII CCGCGG 1 cut(s) 354
SaqAI TTAA 3 cut(s) 32, 465, 620
SatI GCNGC 6 cut(s) 58, 69, 351, 354, 397, 400
Sau3AI GATC 2 cut(s) 220, 368
Sau96I GGNCC 3 cut(s) 242, 326, 348
SchI GAGTC 2 cut(s) 76, 557
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 1 cut(s) 586
SfaNI GCATC 1 cut(s) 262
Sfr303I CCGCGG 1 cut(s) 354
SgrBI CCGCGG 1 cut(s) 354
SinI GGWCC 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
Sse9I AATT 3 cut(s) 73, 123, 577
SsiI CCGC 8 cut(s) 260, 318, 351, 353, 396, 399, 402, 528
SspMI CTAG 3 cut(s) 218, 440, 555
StyD4I CCNGG 1 cut(s) 101
StyI CCWWGG 1 cut(s) 540
TaaI ACNGT 3 cut(s) 198, 500, 524
TaqI TCGA 2 cut(s) 193, 519
TaqII GACCGA 1 cut(s) 259
TasI AATT 3 cut(s) 73, 123, 577
TauI GCSGC 4 cut(s) 353, 356, 399, 402
Tru1I TTAA 3 cut(s) 32, 465, 620
Tru9I TTAA 3 cut(s) 32, 465, 620
TscAI CASTG 2 cut(s) 118, 414
TseI GCWGC 2 cut(s) 57, 68
TspRI CASTG 2 cut(s) 118, 414
Tth111I GACNNNGTC 1 cut(s) 198
Vha464I CTTAAG 1 cut(s) 31
VpaK11BI GGWCC 1 cut(s) 242
XapI RAATTY 1 cut(s) 73
XbaI TCTAGA 1 cut(s) 217
XspI CTAG 3 cut(s) 218, 440, 555
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.