Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000981

Physical Location & Seq

Genomic Coordinates Forward (+)

14110364 .. 14111907

Gene Structure 1544 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007158

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGACCAATCCTAAACGGTACGATATCCGATTATCCAAGAACAATCAGAAACGAGAATCGGGCACTATCAACCTAGAGATTTCTCGGCTCCGAAGTGGCCCTGTACCTTGGGTATGGAAGGATGGCTCCGCTGCTCTTTCTACTCATCTCCTTGACGGCAACGGCGATTGGATTCCACGATGCTCTCAAAGTTTTGATAGGGTTTGTCTCCTTGGGGGATCGAAGCCGATGATGATTACCATCTGGGCCGTGATGGTGCGTGGCTCCTGGCCTTCAATCTTGTTTGGGTCTCTAGTGTTTCCCTACCGGCAAAGGTGGTGGCGGATCCATGGCGGCGGCATTTTGTGGTGGTGGCTTACCCATGATCACAACGGCGGCAACACTGTGGGGGAGACTTTTTTCTCTCCTAGGGTTTGCTCCCGTGGGCTTGGTTGGGCATGGTATTGGGATACTCAGTCATTCTGGGCCTTGGAATGGATTAGGATCAGTTTGGGCTGTATGGATTACATGGGTTCCTTTTGGGTTAAGGTGGATTGGAGGCTCACTGGTTGGGAGGTCCTGATGAATGAAGAGGGAGTGGATGGCGACAAGTCATCCTCTACTCCAAATGTTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

23.65

Weight (kDa)

9.0

Isoelectric Point (pI)

35.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000981)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0486651 RchiOBHm_Chr4g0407841 RchiOBHm_Chr6g0312071 RchiOBHm_Chr6g0312081 RchiOBHm_Chr7g0199951
rosa_laevigata	RLG00000000594 RLG00000001567 RLG00000001832 RLG00000004637 RLG00000004640 RLG00000004833 RLG00000006679 RLG00000007158 RLG00000008694 RLG00000009075 RLG00000011512 RLG00000012673 RLG00000015109 RLG00000016150 RLG00000017316 RLG00000019776 RLG00000020284 RLG00000020334 RLG00000021424 RLG00000021718 RLG00000022244 RLG00000023069 RLG00000023643 RLG00000025130 RLG00000027919 RLG00000028123 RLG00000029202 RLG00000030087 RLG00000035075 RLG00000035197 RLG00000035409 RLG00000035824
rosa_multiflora	Rmu_sc0002613.1_g000004 Rmu_ssc0000041.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019920 Rroxscaffold_2G00115510 Rroxscaffold_3G00246460 Rroxscaffold_3G00264120 Rroxscaffold_5G00344800 Rroxscaffold_6G00403360 Rroxscaffold_7G00204700
rosa_rugosa	Rorug02G0168200 Rorug05G0236500 Rorug05G0287700 Rorug05G0492800 Rorug06G0461500 Rorug06G0495600
rosa_samantha	Rh1CG201100 Rh1DG303400 Rh2BG472700 Rh3AG275800 Rh5BG139300 Rh5CG230200 Rh5DG114300 Rh6AG509200 Rh6BG248700 Rh6CG280300 Rh6DG402300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	129, 322, 333, 336, 375
AclWI	GGATC	4 cut(s)	226, 319, 332, 491
AfaI	GTAC	2 cut(s)	20, 105
AfiI	CCNNNNNNNGG	1 cut(s)	474
AgsI	TTSAA	1 cut(s)	276
AjnI	CCWGG	1 cut(s)	266
Alw26I	GTCTC	3 cut(s)	212, 294, 386
AlwI	GGATC	4 cut(s)	226, 319, 332, 491
AoxI	GGCC	4 cut(s)	97, 246, 269, 465
ApeKI	GCWGC	1 cut(s)	131
AspA2I	CCTAGG	1 cut(s)	407
AspS9I	GGNCC	4 cut(s)	98, 246, 465, 556
AvaII	GGWCC	1 cut(s)	556
AvrII	CCTAGG	1 cut(s)	407
BaeGI	GKGCMC	1 cut(s)	65
BamHI	GGATCC	1 cut(s)	324
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	4 cut(s)	116, 247, 248, 575
BceAI	ACGGC	4 cut(s)	172, 178, 233, 388
BciT130I	CCWGG	1 cut(s)	268
BciVI	GTATCC	1 cut(s)	442
BclI	TGATCA	1 cut(s)	364
BcoDI	GTCTC	3 cut(s)	212, 294, 386
BfaI	CTAG	3 cut(s)	74, 293, 408
BfuI	GTATCC	1 cut(s)	442
BisI	GCNGC	4 cut(s)	132, 334, 337, 376
BlnI	CCTAGG	1 cut(s)	407
BlsI	GCNGC	4 cut(s)	133, 335, 338, 377
Bme1390I	CCNGG	1 cut(s)	268
Bme18I	GGWCC	1 cut(s)	556
BmgT120I	GGNCC	4 cut(s)	98, 246, 465, 556
BmiI	GGNNCC	5 cut(s)	89, 127, 265, 326, 514
BmrFI	CCNGG	1 cut(s)	268
BmsI	GCATC	1 cut(s)	170
BsaBI	GATNNNNATC	2 cut(s)	239, 482
BsaI	GGTCTC	1 cut(s)	294
BsaJI	CCNNGG	6 cut(s)	107, 211, 328, 407, 421, 468
Bsc4I	CCNNNNNNNGG	1 cut(s)	474
Bse118I	RCCGGY	1 cut(s)	306
Bse1I	ACTGG	1 cut(s)	550
Bse8I	GATNNNNATC	2 cut(s)	239, 482
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	6 cut(s)	107, 211, 328, 407, 421, 468
BseGI	GGATG	3 cut(s)	127, 586, 593
BseJI	GATNNNNATC	2 cut(s)	239, 482
BseLI	CCNNNNNNNGG	1 cut(s)	474
BseMII	CTCAG	1 cut(s)	467
BseNI	ACTGG	1 cut(s)	550
BseSI	GKGCMC	1 cut(s)	65
BseXI	GCAGC	1 cut(s)	118
BshFI	GGCC	4 cut(s)	99, 248, 271, 467
BsiSI	CCGG	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	474
BsmAI	GTCTC	3 cut(s)	212, 294, 386
BsnI	GGCC	4 cut(s)	99, 248, 271, 467
Bso31I	GGTCTC	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	65
Bsp143I	GATC	4 cut(s)	218, 324, 364, 483
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	5 cut(s)	129, 322, 333, 336, 375
BspANI	GGCC	4 cut(s)	99, 248, 271, 467
BspCNI	CTCAG	1 cut(s)	466
BspLI	GGNNCC	5 cut(s)	89, 127, 265, 326, 514
BspPI	GGATC	4 cut(s)	226, 319, 332, 491
BspTNI	GGTCTC	1 cut(s)	294
BsrFI	RCCGGY	1 cut(s)	306
BsrI	ACTGG	1 cut(s)	550
BssAI	RCCGGY	1 cut(s)	306
BssECI	CCNNGG	6 cut(s)	107, 211, 328, 407, 421, 468
BssMI	GATC	4 cut(s)	218, 324, 364, 483
BssT1I	CCWWGG	5 cut(s)	107, 211, 328, 407, 468
Bst2UI	CCWGG	1 cut(s)	268
Bst4CI	ACNGT	2 cut(s)	18, 385
Bst6I	CTCTTC	1 cut(s)	564
BstDEI	CTNAG	1 cut(s)	453
BstDSI	CCRYGG	2 cut(s)	328, 421
BstF5I	GGATG	3 cut(s)	127, 586, 593
BstKTI	GATC	4 cut(s)	221, 327, 367, 486
BstMAI	GTCTC	3 cut(s)	212, 294, 386
BstMBI	GATC	4 cut(s)	218, 324, 364, 483
BstNI	CCWGG	1 cut(s)	268
BstSCI	CCNGG	1 cut(s)	266
BstSLI	GKGCMC	1 cut(s)	65
BstV1I	GCAGC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BsuI	GTATCC	1 cut(s)	442
BsuRI	GGCC	4 cut(s)	99, 248, 271, 467
BtgI	CCRYGG	2 cut(s)	328, 421
BtsCI	GGATG	3 cut(s)	127, 586, 593
BtsIMutI	CAGTG	2 cut(s)	381, 543
Cfr10I	RCCGGY	1 cut(s)	306
Cfr13I	GGNCC	4 cut(s)	98, 246, 465, 556
Csp6I	GTAC	2 cut(s)	19, 104
CspCI	CAANNNNNGTGG	2 cut(s)	299, 334
CviAII	CATG	4 cut(s)	329, 362, 438, 508
CviQI	GTAC	2 cut(s)	19, 104
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	4 cut(s)	220, 326, 366, 485
DpnII	GATC	4 cut(s)	218, 324, 364, 483
Eam1104I	CTCTTC	1 cut(s)	564
EarI	CTCTTC	1 cut(s)	564
EciI	GGCGGA	1 cut(s)	337
Eco130I	CCWWGG	5 cut(s)	107, 211, 328, 407, 468
Eco31I	GGTCTC	1 cut(s)	294
Eco32I	GATATC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	556
EcoO109I	RGGNCCY	1 cut(s)	556
EcoRII	CCWGG	1 cut(s)	266
EcoRV	GATATC	1 cut(s)	25
EcoT14I	CCWWGG	5 cut(s)	107, 211, 328, 407, 468
ErhI	CCWWGG	5 cut(s)	107, 211, 328, 407, 468
FaeI	CATG	4 cut(s)	332, 365, 441, 511
FaiI	YATR	6 cut(s)	115, 330, 363, 439, 500, 509
FatI	CATG	4 cut(s)	328, 361, 437, 507
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	4 cut(s)	132, 334, 337, 376
FokI	GGATG	3 cut(s)	134, 580, 593
Fsp4HI	GCNGC	4 cut(s)	132, 334, 337, 376
FspBI	CTAG	3 cut(s)	74, 293, 408
GluI	GCNGC	4 cut(s)	132, 334, 337, 376
HaeIII	GGCC	4 cut(s)	99, 248, 271, 467
HapII	CCGG	1 cut(s)	307
Hin1II	CATG	4 cut(s)	332, 365, 441, 511
HinfI	GANTC	2 cut(s)	56, 172
HpaII	CCGG	1 cut(s)	307
Hpy188I	TCNGA	3 cut(s)	29, 48, 92
Hpy188III	TCNNGA	1 cut(s)	559
HpyAV	CCTTC	2 cut(s)	112, 282
HpyCH4III	ACNGT	2 cut(s)	18, 385
HpyF3I	CTNAG	1 cut(s)	453
Hsp92II	CATG	4 cut(s)	332, 365, 441, 511
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	4 cut(s)	218, 324, 364, 483
LmnI	GCTCC	4 cut(s)	93, 131, 269, 422
LpnPI	CCDG	8 cut(s)	114, 229, 253, 280, 320, 448, 531, 572
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	3 cut(s)	74, 293, 408
MalI	GATC	4 cut(s)	220, 326, 366, 485
MboI	GATC	4 cut(s)	218, 324, 364, 483
MboII	GAAGA	1 cut(s)	581
MflI	RGATCY	1 cut(s)	324
MhlI	GDGCHC	1 cut(s)	65
MnlI	CCTC	4 cut(s)	531, 547, 565, 607
MseI	TTAA	1 cut(s)	525
MspA1I	CMGCKG	1 cut(s)	131
MspI	CCGG	1 cut(s)	307
MspR9I	CCNGG	1 cut(s)	268
MvaI	CCWGG	1 cut(s)	268
NcoI	CCATGG	1 cut(s)	328
NdeII	GATC	4 cut(s)	218, 324, 364, 483
NlaIII	CATG	4 cut(s)	332, 365, 441, 511
NlaIV	GGNNCC	5 cut(s)	89, 127, 265, 326, 514
NmeAIII	GCCGAG	1 cut(s)	64
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PfeI	GAWTC	2 cut(s)	56, 172
PkrI	GCNGC	4 cut(s)	133, 335, 338, 377
PpuMI	RGGWCCY	1 cut(s)	556
Psp5II	RGGWCCY	1 cut(s)	556
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	5 cut(s)	89, 127, 265, 326, 514
PspPI	GGNCC	4 cut(s)	98, 246, 465, 556
PspPPI	RGGWCCY	1 cut(s)	556
PsuI	RGATCY	1 cut(s)	324
RsaI	GTAC	2 cut(s)	20, 105
RsaNI	GTAC	2 cut(s)	19, 104
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	4 cut(s)	132, 334, 337, 376
Sau3AI	GATC	4 cut(s)	218, 324, 364, 483
Sau96I	GGNCC	4 cut(s)	98, 246, 465, 556
ScrFI	CCNGG	1 cut(s)	268
SduI	GDGCHC	1 cut(s)	65
SetI	ASST	5 cut(s)	75, 109, 317, 531, 558
SfaNI	GCATC	1 cut(s)	170
SinI	GGWCC	1 cut(s)	556
SsiI	CCGC	5 cut(s)	129, 322, 333, 336, 375
SspMI	CTAG	3 cut(s)	74, 293, 408
StyD4I	CCNGG	1 cut(s)	266
StyI	CCWWGG	5 cut(s)	107, 211, 328, 407, 468
TaaI	ACNGT	2 cut(s)	18, 385
TaqI	TCGA	1 cut(s)	221
TauI	GCSGC	3 cut(s)	336, 339, 378
TfiI	GAWTC	2 cut(s)	56, 172
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	2 cut(s)	388, 550
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	578, 582
TspRI	CASTG	2 cut(s)	388, 550
VpaK11BI	GGWCC	1 cut(s)	556
XmaJI	CCTAGG	1 cut(s)	407
XspI	CTAG	3 cut(s)	74, 293, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.