Rh1DG303400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000981
Physical Location & Seq
Forward (+)
53000963 .. 53001730
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG303400.1

Sequence Viewer

Length: 768 bp
ATGGCCGATGGTGGTGAACCTCCGACTGGGCGAGTGGGGATTTGCTCTCTTCTTGCCTATAGTTGGATTGCAGATTGCAGCGGCGGGGGAGTTCTCCGACGTATCTCTCTGAGTATTGTTTCCTATTTCCCTCTCGTTCCAATGGTTTTGGTTGTTCGTTTGGGAATGATTTCGGTGTCGCTGAGGTTAAGCGACGGTTTGGTGATGAAAGACTTTGTTTCCGGAACCAACGGAGTTCTGGTGTTGAAGTCGGGTTTTGGGAGACTGACGGCGAGCACGATTATGAAGCGAGTTGCTGGATTACCACGGGACAGGGTCGTTGACTCATGTTATTTGGCGGAGAAGGACGACGTCGGTGATTATGGGGGCTTTTTCTGGTCTGACTTTGATTTGACTGCCGGCGGTCATGGTGATGAGGTCGAGAGGCCATGGGTCAGATGCGGCATCGGCGTCTTCCAGATTGGGTTGTCTCTGACCGTGGGCGTCGGCGGTGGCGTCACAAGTGGCAAGTACGGCCTCGGTGGTAGCTTTTGCGCCGGTGCTGATGCTGACGCTTGGGTATGCGGTGTCTCAGTTGCTAGGGAGTCAAGGCTGAGTGGTTGGGCTCCAAACAGCAAGTTGGGCCTGATGGTGGATGTTTGCAATGTACGCATTGATGTTGGATGTGGTGGTTCGCTGCAATGCGAAATTGGGCAATTTGTGGAGGCTGCAACTGCGGAGGGTGATGTGGAAGGTGCTATGTCACATTCCACTATTAGTTTAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

26.47

Weight (kDa)

4.94

Isoelectric Point (pI)

19.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 354
AccIII TCCGGA 1 cut(s) 221
AciI CCGC 8 cut(s) 81, 84, 338, 402, 441, 489, 564, 716
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 4 cut(s) 351, 450, 483, 495
AfaI GTAC 2 cut(s) 512, 648
AfiI CCNNNNNNNGG 3 cut(s) 26, 63, 631
AgsI TTSAA 1 cut(s) 247
AluBI AGCT 1 cut(s) 528
AluI AGCT 1 cut(s) 528
Alw21I GWGCWC 1 cut(s) 278
Alw26I GTCTC 3 cut(s) 256, 474, 574
Aor13HI TCCGGA 1 cut(s) 221
AoxI GGCC 4 cut(s) 3, 425, 514, 622
ApeKI GCWGC 3 cut(s) 78, 676, 707
Asp700I GAANNNNTTC 1 cut(s) 169
AspLEI GCGC 1 cut(s) 536
AspS9I GGNCC 1 cut(s) 622
AsuHPI GGTGA 5 cut(s) 26, 214, 368, 422, 734
BanII GRGCYC 1 cut(s) 607
BbsI GAAGAC 1 cut(s) 445
Bbv12I GWGCWC 1 cut(s) 278
BbvCI CCTCAGC 1 cut(s) 182
BbvI GCAGC 3 cut(s) 90, 663, 694
BccI CCATC 2 cut(s) 2, 622
BceAI ACGGC 2 cut(s) 285, 529
BcoDI GTCTC 3 cut(s) 256, 474, 574
BfaI CTAG 1 cut(s) 579
BfmI CTRYAG 1 cut(s) 58
BisI GCNGC 5 cut(s) 79, 82, 442, 677, 708
BlsI GCNGC 5 cut(s) 80, 83, 443, 678, 709
BmgT120I GGNCC 1 cut(s) 622
BmiI GGNNCC 2 cut(s) 226, 606
BmrI ACTGGG 1 cut(s) 36
BmsI GCATC 3 cut(s) 428, 453, 535
BmuI ACTGGG 1 cut(s) 36
BpiI GAAGAC 1 cut(s) 445
Bpu10I CCTNAGC 1 cut(s) 182
BsaHI GRCGYC 4 cut(s) 351, 450, 483, 495
BsaJI CCNNGG 4 cut(s) 305, 428, 477, 517
BsaWI WCCGGW 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 63, 631
Bse118I RCCGGY 2 cut(s) 398, 536
Bse1I ACTGG 1 cut(s) 31
Bse3DI GCAATG 2 cut(s) 649, 686
BseAI TCCGGA 1 cut(s) 221
BseDI CCNNGG 4 cut(s) 305, 428, 477, 517
BseGI GGATG 2 cut(s) 640, 668
BseLI CCNNNNNNNGG 3 cut(s) 26, 63, 631
BseMI GCAATG 2 cut(s) 649, 686
BseMII CTCAG 4 cut(s) 101, 173, 584, 585
BseNI ACTGG 1 cut(s) 31
BseXI GCAGC 3 cut(s) 90, 663, 694
BshFI GGCC 4 cut(s) 5, 427, 516, 624
BsiHKAI GWGCWC 1 cut(s) 278
BsiSI CCGG 3 cut(s) 222, 399, 537
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 3 cut(s) 26, 63, 631
BsmAI GTCTC 3 cut(s) 256, 474, 574
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 4 cut(s) 5, 427, 516, 624
Bsp1286I GDGCHC 2 cut(s) 278, 607
Bsp13I TCCGGA 1 cut(s) 221
Bsp19I CCATGG 1 cut(s) 428
BspACI CCGC 8 cut(s) 81, 84, 338, 402, 441, 489, 564, 716
BspANI GGCC 4 cut(s) 5, 427, 516, 624
BspCNI CTCAG 4 cut(s) 102, 174, 584, 585
BspEI TCCGGA 1 cut(s) 221
BspLI GGNNCC 2 cut(s) 226, 606
BsrDI GCAATG 2 cut(s) 649, 686
BsrFI RCCGGY 2 cut(s) 398, 536
BsrI ACTGG 1 cut(s) 31
BssAI RCCGGY 2 cut(s) 398, 536
BssECI CCNNGG 4 cut(s) 305, 428, 477, 517
BssNI GRCGYC 4 cut(s) 351, 450, 483, 495
BssT1I CCWWGG 1 cut(s) 428
Bst4CI ACNGT 2 cut(s) 197, 478
Bst6I CTCTTC 1 cut(s) 54
BstACI GRCGYC 4 cut(s) 351, 450, 483, 495
BstC8I GCNNGC 2 cut(s) 274, 400
BstDEI CTNAG 4 cut(s) 110, 182, 571, 593
BstDSI CCRYGG 3 cut(s) 305, 428, 477
BstF5I GGATG 2 cut(s) 640, 668
BstHHI GCGC 1 cut(s) 536
BstMAI GTCTC 3 cut(s) 256, 474, 574
BstMWI GCNNNNNNNGC 5 cut(s) 447, 513, 621, 648, 713
BstSFI CTRYAG 1 cut(s) 58
BstV1I GCAGC 3 cut(s) 90, 663, 694
BstV2I GAAGAC 1 cut(s) 445
BsuRI GGCC 4 cut(s) 5, 427, 516, 624
BtgI CCRYGG 3 cut(s) 305, 428, 477
BtsCI GGATG 2 cut(s) 640, 668
Cac8I GCNNGC 2 cut(s) 274, 400
CfoI GCGC 1 cut(s) 536
Cfr10I RCCGGY 2 cut(s) 398, 536
Cfr13I GGNCC 1 cut(s) 622
CseI GACGC 4 cut(s) 439, 472, 484, 560
Csp6I GTAC 2 cut(s) 511, 647
CviAII CATG 3 cut(s) 327, 407, 429
CviJI RGCY 9 cut(s) 5, 369, 427, 516, 528, 592, 605, 624, 707
CviKI_1 RGCY 9 cut(s) 5, 369, 427, 516, 528, 592, 605, 624, 707
CviQI GTAC 2 cut(s) 511, 647
DdeI CTNAG 4 cut(s) 110, 182, 571, 593
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
EciI GGCGGA 1 cut(s) 353
Eco130I CCWWGG 1 cut(s) 428
Eco24I GRGCYC 1 cut(s) 607
EcoT14I CCWWGG 1 cut(s) 428
EcoT38I GRGCYC 1 cut(s) 607
ErhI CCWWGG 1 cut(s) 428
FaeI CATG 3 cut(s) 330, 410, 432
FaiI YATR 8 cut(s) 60, 284, 328, 363, 408, 430, 562, 740
FaqI GGGAC 1 cut(s) 323
FatI CATG 3 cut(s) 326, 406, 428
FauI CCCGC 1 cut(s) 77
Fnu4HI GCNGC 5 cut(s) 79, 82, 442, 677, 708
FokI GGATG 2 cut(s) 647, 675
FriOI GRGCYC 1 cut(s) 607
Fsp4HI GCNGC 5 cut(s) 79, 82, 442, 677, 708
FspBI CTAG 1 cut(s) 579
GlaI GCGC 1 cut(s) 535
GluI GCNGC 5 cut(s) 79, 82, 442, 677, 708
HaeIII GGCC 4 cut(s) 5, 427, 516, 624
HapII CCGG 3 cut(s) 222, 399, 537
HgaI GACGC 4 cut(s) 439, 472, 484, 560
HhaI GCGC 1 cut(s) 536
Hin1I GRCGYC 4 cut(s) 351, 450, 483, 495
Hin1II CATG 3 cut(s) 330, 410, 432
Hin6I GCGC 1 cut(s) 534
HinP1I GCGC 1 cut(s) 534
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 2 cut(s) 323, 584
HpaII CCGG 3 cut(s) 222, 399, 537
HphI GGTGA 5 cut(s) 26, 214, 368, 422, 734
Hpy166II GTNNAC 2 cut(s) 17, 322
Hpy188I TCNGA 6 cut(s) 24, 98, 111, 382, 437, 474
Hpy188III TCNNGA 3 cut(s) 222, 421, 457
Hpy8I GTNNAC 2 cut(s) 17, 322
Hpy99I CGWCG 5 cut(s) 102, 197, 353, 356, 488
HpyAV CCTTC 2 cut(s) 337, 725
HpyCH4III ACNGT 2 cut(s) 197, 478
HpyCH4IV ACGT 2 cut(s) 100, 351
HpyCH4V TGCA 5 cut(s) 71, 78, 642, 679, 710
HpyF10VI GCNNNNNNNGC 5 cut(s) 447, 513, 621, 648, 713
HpyF3I CTNAG 4 cut(s) 110, 182, 571, 593
HpySE526I ACGT 2 cut(s) 100, 351
Hsp92I GRCGYC 4 cut(s) 351, 450, 483, 495
Hsp92II CATG 3 cut(s) 330, 410, 432
HspAI GCGC 1 cut(s) 534
Kpn2I TCCGGA 1 cut(s) 221
KroI GCCGGC 1 cut(s) 398
KroNI GCCGGC 1 cut(s) 400
LmnI GCTCC 1 cut(s) 610
Lsp1109I GCAGC 3 cut(s) 90, 663, 694
LweI GCATC 3 cut(s) 428, 453, 535
MaeI CTAG 1 cut(s) 579
MaeII ACGT 2 cut(s) 100, 351
MaeIII GTNAC 2 cut(s) 496, 741
MboII GAAGA 2 cut(s) 41, 445
MhlI GDGCHC 2 cut(s) 278, 607
MluCI AATT 3 cut(s) 687, 695, 762
MlyI GAGTC 2 cut(s) 317, 593
MmeI TCCRAC 4 cut(s) 44, 47, 121, 640
MnlI CCTC 8 cut(s) 30, 141, 177, 409, 417, 527, 697, 712
MroI TCCGGA 1 cut(s) 221
MroNI GCCGGC 1 cut(s) 398
MroXI GAANNNNTTC 1 cut(s) 169
MseI TTAA 3 cut(s) 188, 761, 766
MslI CAYNNNNRTG 2 cut(s) 281, 411
MspA1I CMGCKG 1 cut(s) 81
MspI CCGG 3 cut(s) 222, 399, 537
MwoI GCNNNNNNNGC 5 cut(s) 447, 513, 621, 648, 713
NaeI GCCGGC 1 cut(s) 400
NcoI CCATGG 1 cut(s) 428
NgoMIV GCCGGC 1 cut(s) 398
NlaIII CATG 3 cut(s) 330, 410, 432
NlaIV GGNNCC 2 cut(s) 226, 606
NmuCI GTSAC 2 cut(s) 496, 741
PcsI WCGNNNNNNNCGW 2 cut(s) 275, 492
PdiI GCCGGC 1 cut(s) 400
PdmI GAANNNNTTC 1 cut(s) 169
PflFI GACNNNGTC 2 cut(s) 314, 350
PkrI GCNGC 5 cut(s) 80, 83, 443, 678, 709
PleI GAGTC 2 cut(s) 317, 592
PpsI GAGTC 2 cut(s) 317, 592
PspN4I GGNNCC 2 cut(s) 226, 606
PspPI GGNCC 1 cut(s) 622
PsyI GACNNNGTC 2 cut(s) 314, 350
RsaI GTAC 2 cut(s) 512, 648
RsaNI GTAC 2 cut(s) 511, 647
RseI CAYNNNNRTG 2 cut(s) 281, 411
SaqAI TTAA 3 cut(s) 188, 761, 766
SatI GCNGC 5 cut(s) 79, 82, 442, 677, 708
Sau96I GGNCC 1 cut(s) 622
SchI GAGTC 2 cut(s) 317, 593
SduI GDGCHC 2 cut(s) 278, 607
SetI ASST 7 cut(s) 22, 103, 188, 354, 420, 530, 736
SfaNI GCATC 3 cut(s) 428, 453, 535
SfcI CTRYAG 1 cut(s) 58
SgrAI CRCCGGYG 1 cut(s) 536
SmiMI CAYNNNNRTG 2 cut(s) 281, 411
Sse9I AATT 3 cut(s) 687, 695, 762
SsiI CCGC 8 cut(s) 81, 84, 338, 402, 441, 489, 564, 716
SspMI CTAG 1 cut(s) 579
StyI CCWWGG 1 cut(s) 428
TaaI ACNGT 2 cut(s) 197, 478
TaiI ACGT 2 cut(s) 103, 354
TaqI TCGA 1 cut(s) 420
TasI AATT 3 cut(s) 687, 695, 762
TauI GCSGC 2 cut(s) 84, 444
Tru1I TTAA 3 cut(s) 188, 761, 766
Tru9I TTAA 3 cut(s) 188, 761, 766
TseFI GTSAC 2 cut(s) 496, 741
TseI GCWGC 3 cut(s) 78, 676, 707
Tsp45I GTSAC 2 cut(s) 496, 741
TspDTI ATGAA 2 cut(s) 221, 299
TspGWI ACGGA 1 cut(s) 246
Tth111I GACNNNGTC 2 cut(s) 314, 350
XcmI CCANNNNNNNNNTGG 1 cut(s) 235
XmnI GAANNNNTTC 1 cut(s) 169
XspI CTAG 1 cut(s) 579
ZraI GACGTC 1 cut(s) 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.