Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000981

Physical Location & Seq

Genomic Coordinates Reverse (-)

14326873 .. 14327232

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG139300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTTTTCCGGTGAGGTCCCTTTATATTCTGTCCTCCTCCTCCTCTCCGACGAGGTTTACCAGCAGCAGCCTCTGCCCACTGTCACCTTCGCAAGTCCGGCTCTGTTACCAAGCAGCTCCGACAGGCCACCGGAGCAAAGATCAAAATCGAGGAGCTGCCTTAACTCGACTCGCCGGACCGGGACGCCGTCGTCATCGCTCCCAGTCGCAAATCCGGTCAAAACAGTGATGGTGGGTTTGGTTGGGCAGCAGGGGCAAGATAACGGTGGGTTTGCTCCGATTCGGAATTTCGTCGGTGAATTTGTTTCCGGCAAGTATCAGTCTCCGCAGAAGGAGTTGTTGGAGAGGTTGAGGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.0

Weight (kDa)

9.36

Isoelectric Point (pI)

72.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000981)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0486651 RchiOBHm_Chr4g0407841 RchiOBHm_Chr6g0312071 RchiOBHm_Chr6g0312081 RchiOBHm_Chr7g0199951
rosa_laevigata	RLG00000000594 RLG00000001567 RLG00000001832 RLG00000004637 RLG00000004640 RLG00000004833 RLG00000006679 RLG00000007158 RLG00000008694 RLG00000009075 RLG00000011512 RLG00000012673 RLG00000015109 RLG00000016150 RLG00000017316 RLG00000019776 RLG00000020284 RLG00000020334 RLG00000021424 RLG00000021718 RLG00000022244 RLG00000023069 RLG00000023643 RLG00000025130 RLG00000027919 RLG00000028123 RLG00000029202 RLG00000030087 RLG00000035075 RLG00000035197 RLG00000035409 RLG00000035824
rosa_multiflora	Rmu_sc0002613.1_g000004 Rmu_ssc0000041.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019920 Rroxscaffold_2G00115510 Rroxscaffold_3G00246460 Rroxscaffold_3G00264120 Rroxscaffold_5G00344800 Rroxscaffold_6G00403360 Rroxscaffold_7G00204700
rosa_rugosa	Rorug02G0168200 Rorug05G0236500 Rorug05G0287700 Rorug05G0492800 Rorug06G0461500 Rorug06G0495600
rosa_samantha	Rh1CG201100 Rh1DG303400 Rh2BG472700 Rh3AG275800 Rh5BG139300 Rh5CG230200 Rh5DG114300 Rh6AG509200 Rh6BG248700 Rh6CG280300 Rh6DG402300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	190
AciI	CCGC	1 cut(s)	326
AcsI	RAATTY	2 cut(s)	286, 299
AcyI	GRCGYC	1 cut(s)	185
AjuI	GAANNNNNNNTTGG	2 cut(s)	323, 355
AluBI	AGCT	2 cut(s)	117, 156
AluI	AGCT	2 cut(s)	117, 156
Alw26I	GTCTC	1 cut(s)	327
AlwNI	CAGNNNCTG	1 cut(s)	73
AoxI	GGCC	1 cut(s)	125
ApeKI	GCWGC	5 cut(s)	64, 67, 114, 156, 247
ApoI	RAATTY	2 cut(s)	286, 299
AspS9I	GGNCC	2 cut(s)	16, 177
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	3 cut(s)	23, 76, 308
AvaII	GGWCC	2 cut(s)	16, 177
BbvI	GCAGC	5 cut(s)	76, 79, 126, 143, 259
BccI	CCATC	1 cut(s)	223
BceAI	ACGGC	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	181
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	1 cut(s)	358
BisI	GCNGC	5 cut(s)	65, 68, 115, 157, 248
BlsI	GCNGC	5 cut(s)	66, 69, 116, 158, 249
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	2 cut(s)	16, 177
BmgT120I	GGNCC	2 cut(s)	16, 177
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	181
BmrI	ACTGGG	1 cut(s)	197
BmuI	ACTGGG	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	181
BsaBI	GATNNNNATC	1 cut(s)	145
BsaHI	GRCGYC	1 cut(s)	185
BsaWI	WCCGGW	3 cut(s)	8, 130, 214
Bse1I	ACTGG	1 cut(s)	203
Bse8I	GATNNNNATC	1 cut(s)	145
BseJI	GATNNNNATC	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	203
BseRI	GAGGAG	4 cut(s)	26, 29, 32, 166
BseXI	GCAGC	5 cut(s)	76, 79, 126, 143, 259
BshFI	GGCC	1 cut(s)	127
BsiSI	CCGG	7 cut(s)	9, 98, 131, 175, 180, 215, 309
BslFI	GGGAC	2 cut(s)	2, 196
BsmAI	GTCTC	1 cut(s)	327
BsmFI	GGGAC	2 cut(s)	2, 196
BsnI	GGCC	1 cut(s)	127
Bsp143I	GATC	1 cut(s)	140
BspACI	CCGC	1 cut(s)	326
BspANI	GGCC	1 cut(s)	127
BspLI	GGNNCC	1 cut(s)	18
BsrI	ACTGG	1 cut(s)	203
BssMI	GATC	1 cut(s)	140
BssNI	GRCGYC	1 cut(s)	185
Bst4CI	ACNGT	3 cut(s)	82, 226, 266
BstACI	GRCGYC	1 cut(s)	185
BstAPI	GCANNNNNTGC	1 cut(s)	73
BstKTI	GATC	1 cut(s)	143
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	4 cut(s)	73, 98, 133, 253
BstSCI	CCNGG	1 cut(s)	179
BstV1I	GCAGC	5 cut(s)	76, 79, 126, 143, 259
BsuRI	GGCC	1 cut(s)	127
BtgZI	GCGATG	1 cut(s)	180
BtsIMutI	CAGTG	2 cut(s)	78, 231
CaiI	CAGNNNCTG	1 cut(s)	73
Cfr13I	GGNCC	2 cut(s)	16, 177
CpoI	CGGWCCG	1 cut(s)	177
CseI	GACGC	1 cut(s)	193
CspI	CGGWCCG	1 cut(s)	177
CviJI	RGCY	5 cut(s)	70, 101, 117, 127, 156
CviKI_1	RGCY	5 cut(s)	70, 101, 117, 127, 156
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
DrdI	GACNNNNNNGTC	1 cut(s)	190
DseDI	GACNNNNNNGTC	1 cut(s)	190
Eco47I	GGWCC	2 cut(s)	16, 177
EcoO109I	RGGNCCY	1 cut(s)	16
FaiI	YATR	1 cut(s)	25
FaqI	GGGAC	2 cut(s)	2, 196
Fnu4HI	GCNGC	5 cut(s)	65, 68, 115, 157, 248
Fsp4HI	GCNGC	5 cut(s)	65, 68, 115, 157, 248
FspBI	CTAG	1 cut(s)	358
GluI	GCNGC	5 cut(s)	65, 68, 115, 157, 248
HaeIII	GGCC	1 cut(s)	127
HapII	CCGG	7 cut(s)	9, 98, 131, 175, 180, 215, 309
HgaI	GACGC	1 cut(s)	193
Hin1I	GRCGYC	1 cut(s)	185
HinfI	GANTC	2 cut(s)	169, 280
HpaII	CCGG	7 cut(s)	9, 98, 131, 175, 180, 215, 309
HphI	GGTGA	3 cut(s)	23, 76, 308
Hpy166II	GTNNAC	1 cut(s)	58
Hpy188I	TCNGA	4 cut(s)	49, 121, 279, 285
Hpy8I	GTNNAC	1 cut(s)	58
Hpy99I	CGWCG	3 cut(s)	53, 193, 296
HpyAV	CCTTC	2 cut(s)	97, 325
HpyCH4III	ACNGT	3 cut(s)	82, 226, 266
HpyF10VI	GCNNNNNNNGC	4 cut(s)	73, 98, 133, 253
Hsp92I	GRCGYC	1 cut(s)	185
Kzo9I	GATC	1 cut(s)	140
LmnI	GCTCC	5 cut(s)	122, 133, 153, 204, 280
Lsp1109I	GCAGC	5 cut(s)	76, 79, 126, 143, 259
MaeI	CTAG	1 cut(s)	358
MaeIII	GTNAC	2 cut(s)	82, 105
MalI	GATC	1 cut(s)	142
MboI	GATC	1 cut(s)	140
MluCI	AATT	2 cut(s)	286, 299
MlyI	GAGTC	1 cut(s)	163
MmeI	TCCRAC	3 cut(s)	72, 144, 321
MseI	TTAA	1 cut(s)	162
MspI	CCGG	7 cut(s)	9, 98, 131, 175, 180, 215, 309
MspR9I	CCNGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	4 cut(s)	73, 98, 133, 253
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	1 cut(s)	140
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	82
PfeI	GAWTC	1 cut(s)	280
PflFI	GACNNNGTC	1 cut(s)	187
PkrI	GCNGC	5 cut(s)	66, 69, 116, 158, 249
PleI	GAGTC	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	163
PpuMI	RGGWCCY	1 cut(s)	16
Psp5II	RGGWCCY	1 cut(s)	16
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	2 cut(s)	16, 177
PspPPI	RGGWCCY	1 cut(s)	16
PstNI	CAGNNNCTG	1 cut(s)	73
PsyI	GACNNNGTC	1 cut(s)	187
Rsr2I	CGGWCCG	1 cut(s)	177
RsrII	CGGWCCG	1 cut(s)	177
SaqAI	TTAA	1 cut(s)	162
SatI	GCNGC	5 cut(s)	65, 68, 115, 157, 248
Sau3AI	GATC	1 cut(s)	140
Sau96I	GGNCC	2 cut(s)	16, 177
SchI	GAGTC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	181
SetI	ASST	7 cut(s)	18, 57, 89, 119, 158, 350, 356
SinI	GGWCC	2 cut(s)	16, 177
Sse9I	AATT	2 cut(s)	286, 299
SsiI	CCGC	1 cut(s)	326
SspMI	CTAG	1 cut(s)	358
StyD4I	CCNGG	1 cut(s)	179
TaaI	ACNGT	3 cut(s)	82, 226, 266
TaqI	TCGA	2 cut(s)	149, 167
TasI	AATT	2 cut(s)	286, 299
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	1 cut(s)	162
Tru9I	TTAA	1 cut(s)	162
TscAI	CASTG	2 cut(s)	85, 231
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	5 cut(s)	64, 67, 114, 156, 247
Tsp45I	GTSAC	1 cut(s)	82
TspRI	CASTG	2 cut(s)	85, 231
Tth111I	GACNNNGTC	1 cut(s)	187
VpaK11BI	GGWCC	2 cut(s)	16, 177
XapI	RAATTY	2 cut(s)	286, 299
XspI	CTAG	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.