RLG00000008694

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000981
Physical Location & Seq
Reverse (-)
35200138 .. 35200664
527 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008694

Sequence Viewer

Length: 402 bp
ATGTTTCTCAACTGCATAATGGTCATGTACCTTGGATATGGAGGATGGCAGCGTTACTCTTTCTCCTCCCCTCCTTGGTGGCAACTGCGATTGGATTCGACGGTGCACTTCATGTTTGGATTGGGTTCATCTCCTTGGGGGATCGAAGCCTCAGATGATGGCCATCTTGGCCGTGATGACGCGGGACTTCCCGCCTTCCAACTTGTTTGGGATTTAGGTGTTTCCCTACCGGCAGAGGTGGTGGTGGGATCCATGGCGACGGCTTTCTGTGGTAGAGGCTCTCTTCTAGGCCCTAGTTGGATGGATTGGACCTGGTATTGGGCTGCTTACTCAATCTGGGCCTTGGAATGGAACAAGATCAATTTGGGCTGTATGGACTGCATGGGCTTCCTTTTGGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.93

Weight (kDa)

4.42

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 182
AciI CCGC 2 cut(s) 182, 192
AclWI GGATC 3 cut(s) 149, 243, 256
AcoI YGGCCR 2 cut(s) 160, 169
AfaI GTAC 1 cut(s) 29
AfiI CCNNNNNNNGG 3 cut(s) 75, 318, 348
AjnI CCWGG 1 cut(s) 311
Alw21I GWGCWC 1 cut(s) 108
Alw44I GTGCAC 1 cut(s) 104
AlwI GGATC 3 cut(s) 149, 243, 256
AoxI GGCC 4 cut(s) 160, 169, 289, 339
ApaLI GTGCAC 1 cut(s) 104
ApeKI GCWGC 2 cut(s) 49, 323
AspS9I GGNCC 3 cut(s) 290, 309, 339
AvaII GGWCC 1 cut(s) 309
BaeGI GKGCMC 1 cut(s) 108
BalI TGGCCA 1 cut(s) 162
BamHI GGATCC 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 61, 310
BccI CCATC 4 cut(s) 39, 152, 171, 295
BceAI ACGGC 2 cut(s) 156, 276
BciT130I CCWGG 1 cut(s) 313
BfaI CTAG 2 cut(s) 287, 294
BglI GCCNNNNNGGC 1 cut(s) 168
BisI GCNGC 2 cut(s) 50, 324
BlsI GCNGC 2 cut(s) 51, 325
Bme1390I CCNGG 1 cut(s) 313
Bme18I GGWCC 1 cut(s) 309
BmgT120I GGNCC 3 cut(s) 290, 309, 339
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 313
BsaBI GATNNNNATC 1 cut(s) 162
BsaJI CCNNGG 5 cut(s) 31, 74, 134, 252, 342
BsaXI ACNNNNNCTCC 2 cut(s) 47, 77
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 318, 348
Bse118I RCCGGY 1 cut(s) 229
Bse8I GATNNNNATC 1 cut(s) 162
BseBI CCWGG 1 cut(s) 313
BseDI CCNNGG 5 cut(s) 31, 74, 134, 252, 342
BseGI GGATG 2 cut(s) 50, 306
BseJI GATNNNNATC 1 cut(s) 162
BseLI CCNNNNNNNGG 3 cut(s) 75, 318, 348
BseMII CTCAG 1 cut(s) 165
BseRI GAGGAG 1 cut(s) 55
BseSI GKGCMC 1 cut(s) 108
BseXI GCAGC 2 cut(s) 61, 310
Bsh1236I CGCG 1 cut(s) 182
BshFI GGCC 4 cut(s) 162, 171, 291, 341
BsiHKAI GWGCWC 1 cut(s) 108
BsiSI CCGG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 3 cut(s) 75, 318, 348
BsmFI GGGAC 1 cut(s) 198
BsnI GGCC 4 cut(s) 162, 171, 291, 341
Bsp1286I GDGCHC 1 cut(s) 108
Bsp143I GATC 3 cut(s) 141, 248, 357
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 2 cut(s) 182, 192
BspANI GGCC 4 cut(s) 162, 171, 291, 341
BspCNI CTCAG 1 cut(s) 164
BspFNI CGCG 1 cut(s) 182
BspLI GGNNCC 1 cut(s) 250
BspPI GGATC 3 cut(s) 149, 243, 256
BsrFI RCCGGY 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 229
BssECI CCNNGG 5 cut(s) 31, 74, 134, 252, 342
BssMI GATC 3 cut(s) 141, 248, 357
BssT1I CCWWGG 5 cut(s) 31, 74, 134, 252, 342
Bst2UI CCWGG 1 cut(s) 313
Bst4CI ACNGT 1 cut(s) 103
Bst6I CTCTTC 1 cut(s) 288
BstDEI CTNAG 1 cut(s) 151
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 2 cut(s) 50, 306
BstFNI CGCG 1 cut(s) 182
BstKTI GATC 3 cut(s) 144, 251, 360
BstMBI GATC 3 cut(s) 141, 248, 357
BstMWI GCNNNNNNNGC 1 cut(s) 168
BstNI CCWGG 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 311
BstSLI GKGCMC 1 cut(s) 108
BstUI CGCG 1 cut(s) 182
BstV1I GCAGC 2 cut(s) 61, 310
BstX2I RGATCY 1 cut(s) 248
BstYI RGATCY 1 cut(s) 248
BsuRI GGCC 4 cut(s) 162, 171, 291, 341
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 2 cut(s) 50, 306
Cfr10I RCCGGY 1 cut(s) 229
Cfr13I GGNCC 3 cut(s) 290, 309, 339
CseI GACGC 1 cut(s) 188
CsiI ACCWGGT 1 cut(s) 311
Csp6I GTAC 1 cut(s) 28
CviAII CATG 4 cut(s) 25, 112, 253, 382
CviQI GTAC 1 cut(s) 28
DdeI CTNAG 1 cut(s) 151
DpnI GATC 3 cut(s) 143, 250, 359
DpnII GATC 3 cut(s) 141, 248, 357
EaeI YGGCCR 2 cut(s) 160, 169
Eam1104I CTCTTC 1 cut(s) 288
EarI CTCTTC 1 cut(s) 288
Eco130I CCWWGG 5 cut(s) 31, 74, 134, 252, 342
Eco47I GGWCC 1 cut(s) 309
EcoO109I RGGNCCY 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 311
EcoT14I CCWWGG 5 cut(s) 31, 74, 134, 252, 342
ErhI CCWWGG 5 cut(s) 31, 74, 134, 252, 342
FaeI CATG 4 cut(s) 28, 115, 256, 385
FaiI YATR 7 cut(s) 17, 26, 39, 113, 254, 374, 383
FaqI GGGAC 1 cut(s) 198
FatI CATG 4 cut(s) 24, 111, 252, 381
FauI CCCGC 2 cut(s) 175, 199
Fnu4HI GCNGC 2 cut(s) 50, 324
FokI GGATG 2 cut(s) 57, 313
Fsp4HI GCNGC 2 cut(s) 50, 324
FspBI CTAG 2 cut(s) 287, 294
GluI GCNGC 2 cut(s) 50, 324
HaeIII GGCC 4 cut(s) 162, 171, 291, 341
HapII CCGG 1 cut(s) 230
HgaI GACGC 1 cut(s) 188
Hin1II CATG 4 cut(s) 28, 115, 256, 385
HinfI GANTC 1 cut(s) 95
HpaII CCGG 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 154
Hpy8I GTNNAC 1 cut(s) 106
Hpy99I CGWCG 2 cut(s) 103, 262
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4V TGCA 3 cut(s) 15, 106, 381
HpyF10VI GCNNNNNNNGC 1 cut(s) 168
HpyF3I CTNAG 1 cut(s) 151
Hsp92II CATG 4 cut(s) 28, 115, 256, 385
Kzo9I GATC 3 cut(s) 141, 248, 357
LpnPI CCDG 4 cut(s) 243, 298, 322, 325
Lsp1109I GCAGC 2 cut(s) 61, 310
MabI ACCWGGT 1 cut(s) 311
MaeI CTAG 2 cut(s) 287, 294
MaeIII GTNAC 1 cut(s) 53
MalI GATC 3 cut(s) 143, 250, 359
MboI GATC 3 cut(s) 141, 248, 357
MboII GAAGA 1 cut(s) 275
MflI RGATCY 1 cut(s) 248
MhlI GDGCHC 1 cut(s) 108
MlsI TGGCCA 1 cut(s) 162
MluCI AATT 1 cut(s) 361
MluNI TGGCCA 1 cut(s) 162
MmeI TCCRAC 2 cut(s) 223, 278
MnlI CCTC 6 cut(s) 35, 76, 81, 160, 229, 269
Mox20I TGGCCA 1 cut(s) 162
MscI TGGCCA 1 cut(s) 162
MseI TTAA 1 cut(s) 400
Msp20I TGGCCA 1 cut(s) 162
MspI CCGG 1 cut(s) 230
MspR9I CCNGG 1 cut(s) 313
MvaI CCWGG 1 cut(s) 313
MvnI CGCG 1 cut(s) 182
MwoI GCNNNNNNNGC 1 cut(s) 168
NcoI CCATGG 1 cut(s) 252
NdeII GATC 3 cut(s) 141, 248, 357
NlaIII CATG 4 cut(s) 28, 115, 256, 385
NlaIV GGNNCC 1 cut(s) 250
PfeI GAWTC 1 cut(s) 95
PkrI GCNGC 2 cut(s) 51, 325
Psp6I CCWGG 1 cut(s) 311
PspGI CCWGG 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 3 cut(s) 290, 309, 339
PsuI RGATCY 1 cut(s) 248
RsaI GTAC 1 cut(s) 29
RsaNI GTAC 1 cut(s) 28
SaqAI TTAA 1 cut(s) 400
SatI GCNGC 2 cut(s) 50, 324
Sau3AI GATC 3 cut(s) 141, 248, 357
Sau96I GGNCC 3 cut(s) 290, 309, 339
ScrFI CCNGG 1 cut(s) 313
SduI GDGCHC 1 cut(s) 108
SetI ASST 4 cut(s) 33, 220, 240, 314
SexAI ACCWGGT 1 cut(s) 311
SfiI GGCCNNNNNGGCC 1 cut(s) 168
SinI GGWCC 1 cut(s) 309
Sse9I AATT 1 cut(s) 361
SsiI CCGC 2 cut(s) 182, 192
SspMI CTAG 2 cut(s) 287, 294
StyD4I CCNGG 1 cut(s) 311
StyI CCWWGG 5 cut(s) 31, 74, 134, 252, 342
TaaI ACNGT 1 cut(s) 103
TaqI TCGA 2 cut(s) 98, 144
TasI AATT 1 cut(s) 361
TfiI GAWTC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 400
Tru9I TTAA 1 cut(s) 400
TseI GCWGC 2 cut(s) 49, 323
TspDTI ATGAA 2 cut(s) 100, 117
VneI GTGCAC 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 309
XspI CTAG 2 cut(s) 287, 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.