Rh6BG248700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000981
Physical Location & Seq
Reverse (-)
46012881 .. 46013395
515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG248700.1

Sequence Viewer

Length: 492 bp
ATGGTTTTGGTTGTTCGTTTGGGAATGATTTCGGTGTCGCTGCGATTAAGCGACGGTTTGGTAATGAAAGGCTTTGTTTCCGGAACCGATGGAGTTCTGGTGTTGAAGTCGGGTTTTGGGAGACTGACGGCGAGCACGATTATGAAGCGAGTTGCTGGATTACCGCGGGATAGGGTCGTTGACTCATGTTATTTGGCGGAGAAGGACGACGTCGATGATTATGGGGGCTTTTTCTGGTCTGACTTTGATTTGACTGCCGGCGGTCATGGTGATGAGGTCGAGAGGCCATGGGTCAGATGCAGCATCGGCGGCTTCCAGATTGGGTTGTCTCTGACCGTGGGCGTCTGCGGTGGCGTCCTAAGTGGCAGGTACGGCTTCGGTGGTAGCTTTTGCGCCGGTGCTGATGCTGACGTTTGGGGCGTCAAGGCTGAGTGGTTGGGCTCCAAACAACAAGTTGGGCCTGATGGTGGATGTTTGCAATGTTCGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

17.15

Weight (kDa)

5.27

Isoelectric Point (pI)

17.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 213
Acc36I ACCTGC 1 cut(s) 357
AccII CGCG 1 cut(s) 166
AccIII TCCGGA 1 cut(s) 80
AciI CCGC 6 cut(s) 164, 166, 197, 261, 309, 348
AcyI GRCGYC 4 cut(s) 210, 342, 354, 420
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 1 cut(s) 467
AgsI TTSAA 1 cut(s) 106
AluBI AGCT 1 cut(s) 387
AluI AGCT 1 cut(s) 387
Alw21I GWGCWC 1 cut(s) 137
Alw26I GTCTC 2 cut(s) 115, 333
Aor13HI TCCGGA 1 cut(s) 80
AoxI GGCC 2 cut(s) 284, 458
ApeKI GCWGC 2 cut(s) 40, 300
Asp700I GAANNNNTTC 1 cut(s) 28
AspLEI GCGC 1 cut(s) 395
AspS9I GGNCC 1 cut(s) 458
AsuHPI GGTGA 1 cut(s) 281
BanII GRGCYC 1 cut(s) 443
Bbv12I GWGCWC 1 cut(s) 137
BbvI GCAGC 2 cut(s) 27, 312
BccI CCATC 2 cut(s) 83, 458
BceAI ACGGC 2 cut(s) 144, 388
BcoDI GTCTC 2 cut(s) 115, 333
BfuAI ACCTGC 1 cut(s) 357
BisI GCNGC 3 cut(s) 41, 301, 310
BlsI GCNGC 3 cut(s) 42, 302, 311
BmgT120I GGNCC 1 cut(s) 458
BmiI GGNNCC 2 cut(s) 85, 442
BmsI GCATC 3 cut(s) 287, 312, 394
BsaHI GRCGYC 4 cut(s) 210, 342, 354, 420
BsaJI CCNNGG 3 cut(s) 164, 287, 336
BsaWI WCCGGW 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 467
Bse118I RCCGGY 2 cut(s) 257, 395
Bse3DI GCAATG 1 cut(s) 485
BseAI TCCGGA 1 cut(s) 80
BseDI CCNNGG 3 cut(s) 164, 287, 336
BseGI GGATG 1 cut(s) 476
BseLI CCNNNNNNNGG 1 cut(s) 467
BseMI GCAATG 1 cut(s) 485
BseMII CTCAG 1 cut(s) 420
BseXI GCAGC 2 cut(s) 27, 312
Bsh1236I CGCG 1 cut(s) 166
BshFI GGCC 2 cut(s) 286, 460
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 3 cut(s) 81, 258, 396
BslI CCNNNNNNNGG 1 cut(s) 467
BsmAI GTCTC 2 cut(s) 115, 333
BsnI GGCC 2 cut(s) 286, 460
Bsp1286I GDGCHC 2 cut(s) 137, 443
Bsp13I TCCGGA 1 cut(s) 80
Bsp19I CCATGG 1 cut(s) 287
BspACI CCGC 6 cut(s) 164, 166, 197, 261, 309, 348
BspANI GGCC 2 cut(s) 286, 460
BspCNI CTCAG 1 cut(s) 421
BspEI TCCGGA 1 cut(s) 80
BspFNI CGCG 1 cut(s) 166
BspLI GGNNCC 2 cut(s) 85, 442
BspMI ACCTGC 1 cut(s) 357
BsrDI GCAATG 1 cut(s) 485
BsrFI RCCGGY 2 cut(s) 257, 395
BssAI RCCGGY 2 cut(s) 257, 395
BssECI CCNNGG 3 cut(s) 164, 287, 336
BssNI GRCGYC 4 cut(s) 210, 342, 354, 420
BssT1I CCWWGG 1 cut(s) 287
Bst4CI ACNGT 2 cut(s) 56, 337
BstACI GRCGYC 4 cut(s) 210, 342, 354, 420
BstC8I GCNNGC 2 cut(s) 133, 259
BstDEI CTNAG 2 cut(s) 359, 429
BstDSI CCRYGG 3 cut(s) 164, 287, 336
BstF5I GGATG 1 cut(s) 476
BstFNI CGCG 1 cut(s) 166
BstHHI GCGC 1 cut(s) 395
BstMAI GTCTC 2 cut(s) 115, 333
BstMWI GCNNNNNNNGC 4 cut(s) 306, 309, 372, 484
BstUI CGCG 1 cut(s) 166
BstV1I GCAGC 2 cut(s) 27, 312
BsuRI GGCC 2 cut(s) 286, 460
BtgI CCRYGG 3 cut(s) 164, 287, 336
BtsCI GGATG 1 cut(s) 476
BveI ACCTGC 1 cut(s) 357
Cac8I GCNNGC 2 cut(s) 133, 259
CfoI GCGC 1 cut(s) 395
Cfr10I RCCGGY 2 cut(s) 257, 395
Cfr13I GGNCC 1 cut(s) 458
Cfr42I CCGCGG 1 cut(s) 167
CseI GACGC 3 cut(s) 331, 343, 409
Csp6I GTAC 1 cut(s) 370
CviAII CATG 3 cut(s) 186, 266, 288
CviJI RGCY 9 cut(s) 72, 228, 286, 312, 375, 387, 428, 441, 460
CviKI_1 RGCY 9 cut(s) 72, 228, 286, 312, 375, 387, 428, 441, 460
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 2 cut(s) 359, 429
EciI GGCGGA 1 cut(s) 212
Eco130I CCWWGG 1 cut(s) 287
Eco24I GRGCYC 1 cut(s) 443
EcoT14I CCWWGG 1 cut(s) 287
EcoT38I GRGCYC 1 cut(s) 443
ErhI CCWWGG 1 cut(s) 287
FaeI CATG 3 cut(s) 189, 269, 291
FaiI YATR 5 cut(s) 143, 187, 222, 267, 289
FatI CATG 3 cut(s) 185, 265, 287
FauI CCCGC 1 cut(s) 159
Fnu4HI GCNGC 3 cut(s) 41, 301, 310
FokI GGATG 1 cut(s) 483
FriOI GRGCYC 1 cut(s) 443
Fsp4HI GCNGC 3 cut(s) 41, 301, 310
GlaI GCGC 1 cut(s) 394
GluI GCNGC 3 cut(s) 41, 301, 310
HaeIII GGCC 2 cut(s) 286, 460
HapII CCGG 3 cut(s) 81, 258, 396
HgaI GACGC 3 cut(s) 331, 343, 409
HhaI GCGC 1 cut(s) 395
Hin1I GRCGYC 4 cut(s) 210, 342, 354, 420
Hin1II CATG 3 cut(s) 189, 269, 291
Hin6I GCGC 1 cut(s) 393
HinP1I GCGC 1 cut(s) 393
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 1 cut(s) 182
HpaII CCGG 3 cut(s) 81, 258, 396
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 3 cut(s) 241, 296, 333
Hpy188III TCNNGA 3 cut(s) 81, 280, 316
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 3 cut(s) 56, 212, 215
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 2 cut(s) 56, 337
HpyCH4IV ACGT 2 cut(s) 210, 411
HpyCH4V TGCA 2 cut(s) 300, 478
HpyF10VI GCNNNNNNNGC 4 cut(s) 306, 309, 372, 484
HpyF3I CTNAG 2 cut(s) 359, 429
HpySE526I ACGT 2 cut(s) 210, 411
Hsp92I GRCGYC 4 cut(s) 210, 342, 354, 420
Hsp92II CATG 3 cut(s) 189, 269, 291
HspAI GCGC 1 cut(s) 393
Kpn2I TCCGGA 1 cut(s) 80
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
KspI CCGCGG 1 cut(s) 167
LmnI GCTCC 1 cut(s) 446
LpnPI CCDG 9 cut(s) 83, 94, 141, 220, 271, 329, 352, 409, 474
Lsp1109I GCAGC 2 cut(s) 27, 312
LweI GCATC 3 cut(s) 287, 312, 394
MaeII ACGT 2 cut(s) 210, 411
MhlI GDGCHC 2 cut(s) 137, 443
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 2 cut(s) 268, 276
MroI TCCGGA 1 cut(s) 80
MroNI GCCGGC 1 cut(s) 257
MroXI GAANNNNTTC 1 cut(s) 28
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 2 cut(s) 140, 270
MspA1I CMGCKG 1 cut(s) 166
MspI CCGG 3 cut(s) 81, 258, 396
MvnI CGCG 1 cut(s) 166
MwoI GCNNNNNNNGC 4 cut(s) 306, 309, 372, 484
NaeI GCCGGC 1 cut(s) 259
NcoI CCATGG 1 cut(s) 287
NgoMIV GCCGGC 1 cut(s) 257
NlaIII CATG 3 cut(s) 189, 269, 291
NlaIV GGNNCC 2 cut(s) 85, 442
PcsI WCGNNNNNNNCGW 2 cut(s) 134, 417
PdiI GCCGGC 1 cut(s) 259
PdmI GAANNNNTTC 1 cut(s) 28
PflFI GACNNNGTC 1 cut(s) 209
PkrI GCNGC 3 cut(s) 42, 302, 311
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PspN4I GGNNCC 2 cut(s) 85, 442
PspPI GGNCC 1 cut(s) 458
PsyI GACNNNGTC 1 cut(s) 209
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
RseI CAYNNNNRTG 2 cut(s) 140, 270
SacII CCGCGG 1 cut(s) 167
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 3 cut(s) 41, 301, 310
Sau96I GGNCC 1 cut(s) 458
SchI GAGTC 1 cut(s) 176
SduI GDGCHC 2 cut(s) 137, 443
SetI ASST 5 cut(s) 213, 279, 371, 389, 414
SfaNI GCATC 3 cut(s) 287, 312, 394
Sfr303I CCGCGG 1 cut(s) 167
SgrAI CRCCGGYG 1 cut(s) 395
SgrBI CCGCGG 1 cut(s) 167
SmiMI CAYNNNNRTG 2 cut(s) 140, 270
SsiI CCGC 6 cut(s) 164, 166, 197, 261, 309, 348
StyI CCWWGG 1 cut(s) 287
TaaI ACNGT 2 cut(s) 56, 337
TaiI ACGT 2 cut(s) 213, 414
TaqI TCGA 2 cut(s) 213, 279
TauI GCSGC 1 cut(s) 312
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TseI GCWGC 2 cut(s) 40, 300
TspDTI ATGAA 2 cut(s) 80, 158
Tth111I GACNNNGTC 1 cut(s) 209
XmnI GAANNNNTTC 1 cut(s) 28
ZraI GACGTC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.