RLG00000035409

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000981
Physical Location & Seq
Forward (+)
66541126 .. 66541731
606 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035409

Sequence Viewer

Length: 390 bp
ATGCCCTTCATGTTTGGTTCAGGCTTGTCTCCTTGGGGGATCAAAGCCTCAGATGATGGCCATCTTGGTCGTTGTGGCGCGGGGCTTCTCGCCTTCCACCTTGTCAGAGACAAGAGGAGCAGGGTTTTCATTGACAGCAAAGGCCGTGGTGGGCCCATTGCGGCGACTTTCTGTGATGGTGGCGGAGATTGGATGAATTCGGATTGGCTGGGTCTCTCTTCTGCCTCAGTTGACGGTCGTTTGGCTTCTAACTTGGCCTTGGAGGATGCTAGGGCTACCATGTTTAACTGGGCCTTTTGGGCTCGATCTTGGTTGATGGATTCCTATGGACTGCAGGGGTCTCTTGTTGGGCTGATATTGATTGGGGCTTCTCAAATTGGGTGGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

13.83

Weight (kDa)

6.7

Isoelectric Point (pI)

40.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 80
AciI CCGC 3 cut(s) 80, 161, 183
AclWI GGATC 1 cut(s) 47
AcoI YGGCCR 1 cut(s) 58
AcsI RAATTY 1 cut(s) 196
Alw26I GTCTC 4 cut(s) 33, 102, 218, 345
AlwI GGATC 1 cut(s) 47
AoxI GGCC 5 cut(s) 58, 142, 152, 255, 291
ApaI GGGCCC 1 cut(s) 156
ApoI RAATTY 1 cut(s) 196
AspLEI GCGC 1 cut(s) 80
AspS9I GGNCC 3 cut(s) 152, 153, 291
BaeGI GKGCMC 1 cut(s) 156
BalI TGGCCA 1 cut(s) 60
BanII GRGCYC 2 cut(s) 156, 304
BccI CCATC 4 cut(s) 50, 69, 170, 310
BceAI ACGGC 1 cut(s) 129
BcoDI GTCTC 4 cut(s) 33, 102, 218, 345
BfaI CTAG 1 cut(s) 270
BfmI CTRYAG 1 cut(s) 332
BglI GCCNNNNNGGC 1 cut(s) 299
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
BmgT120I GGNCC 3 cut(s) 152, 153, 291
BmiI GGNNCC 1 cut(s) 154
BmrI ACTGGG 1 cut(s) 298
BmsI GCATC 1 cut(s) 256
BmuI ACTGGG 1 cut(s) 298
BsaBI GATNNNNATC 1 cut(s) 60
BsaI GGTCTC 2 cut(s) 218, 345
BsaJI CCNNGG 3 cut(s) 32, 145, 258
Bse1I ACTGG 1 cut(s) 293
Bse3DI GCAATG 1 cut(s) 156
Bse8I GATNNNNATC 1 cut(s) 60
BseDI CCNNGG 3 cut(s) 32, 145, 258
BseGI GGATG 2 cut(s) 198, 271
BseJI GATNNNNATC 1 cut(s) 60
BseMI GCAATG 1 cut(s) 156
BseMII CTCAG 2 cut(s) 63, 240
BseNI ACTGG 1 cut(s) 293
BseRI GAGGAG 1 cut(s) 130
BseSI GKGCMC 1 cut(s) 156
BseYI CCCAGC 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 80
Bsh1285I CGRYCG 1 cut(s) 238
BshFI GGCC 5 cut(s) 60, 144, 154, 257, 293
BsiEI CGRYCG 1 cut(s) 238
BsmAI GTCTC 4 cut(s) 33, 102, 218, 345
BsnI GGCC 5 cut(s) 60, 144, 154, 257, 293
Bso31I GGTCTC 2 cut(s) 218, 345
Bsp120I GGGCCC 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 156, 304
Bsp143I GATC 2 cut(s) 39, 305
BspACI CCGC 3 cut(s) 80, 161, 183
BspANI GGCC 5 cut(s) 60, 144, 154, 257, 293
BspCNI CTCAG 2 cut(s) 62, 239
BspFNI CGCG 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 154
BspMAI CTGCAG 1 cut(s) 336
BspPI GGATC 1 cut(s) 47
BspTNI GGTCTC 2 cut(s) 218, 345
BsrDI GCAATG 1 cut(s) 156
BsrI ACTGG 1 cut(s) 293
BssECI CCNNGG 3 cut(s) 32, 145, 258
BssMI GATC 2 cut(s) 39, 305
BssT1I CCWWGG 2 cut(s) 32, 258
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 49, 226
BstDSI CCRYGG 1 cut(s) 145
BstF5I GGATG 2 cut(s) 198, 271
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 80
BstKTI GATC 2 cut(s) 42, 308
BstMAI GTCTC 4 cut(s) 33, 102, 218, 345
BstMBI GATC 2 cut(s) 39, 305
BstMCI CGRYCG 1 cut(s) 238
BstMWI GCNNNNNNNGC 1 cut(s) 299
BstSFI CTRYAG 1 cut(s) 332
BstSLI GKGCMC 1 cut(s) 156
BstUI CGCG 1 cut(s) 80
BsuRI GGCC 5 cut(s) 60, 144, 154, 257, 293
BtgI CCRYGG 1 cut(s) 145
BtsCI GGATG 2 cut(s) 198, 271
CfoI GCGC 1 cut(s) 80
Cfr13I GGNCC 3 cut(s) 152, 153, 291
CspCI CAANNNNNGTGG 3 cut(s) 127, 162, 362
CviAII CATG 2 cut(s) 10, 280
DdeI CTNAG 2 cut(s) 49, 226
DpnI GATC 2 cut(s) 41, 307
DpnII GATC 2 cut(s) 39, 305
EaeI YGGCCR 1 cut(s) 58
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
EciI GGCGGA 1 cut(s) 198
Eco130I CCWWGG 2 cut(s) 32, 258
Eco24I GRGCYC 2 cut(s) 156, 304
Eco31I GGTCTC 2 cut(s) 218, 345
EcoRI GAATTC 1 cut(s) 196
EcoT14I CCWWGG 2 cut(s) 32, 258
EcoT38I GRGCYC 2 cut(s) 156, 304
ErhI CCWWGG 2 cut(s) 32, 258
FaeI CATG 2 cut(s) 13, 283
FaiI YATR 3 cut(s) 11, 281, 327
FatI CATG 2 cut(s) 9, 279
FauI CCCGC 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 2 cut(s) 205, 278
FriOI GRGCYC 2 cut(s) 156, 304
Fsp4HI GCNGC 1 cut(s) 162
FspBI CTAG 1 cut(s) 270
GlaI GCGC 1 cut(s) 79
GluI GCNGC 1 cut(s) 162
GsaI CCCAGC 1 cut(s) 212
HaeIII GGCC 5 cut(s) 60, 144, 154, 257, 293
HhaI GCGC 1 cut(s) 80
Hin1II CATG 2 cut(s) 13, 283
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 1 cut(s) 320
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 3 cut(s) 52, 107, 202
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 2 cut(s) 16, 103
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 1 cut(s) 334
HpyF10VI GCNNNNNNNGC 1 cut(s) 299
HpyF3I CTNAG 2 cut(s) 49, 226
Hsp92II CATG 2 cut(s) 13, 283
HspAI GCGC 1 cut(s) 78
Kzo9I GATC 2 cut(s) 39, 305
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 5 cut(s) 6, 106, 194, 274, 320
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 270
MalI GATC 2 cut(s) 41, 307
MboI GATC 2 cut(s) 39, 305
MboII GAAGA 1 cut(s) 210
MhlI GDGCHC 2 cut(s) 156, 304
MlsI TGGCCA 1 cut(s) 60
MluCI AATT 2 cut(s) 196, 375
MluNI TGGCCA 1 cut(s) 60
MnlI CCTC 4 cut(s) 58, 108, 235, 256
Mox20I TGGCCA 1 cut(s) 60
MscI TGGCCA 1 cut(s) 60
MseI TTAA 1 cut(s) 285
Msp20I TGGCCA 1 cut(s) 60
MvnI CGCG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 299
NdeII GATC 2 cut(s) 39, 305
NlaIII CATG 2 cut(s) 13, 283
NlaIV GGNNCC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 320
PkrI GCNGC 1 cut(s) 163
PspFI CCCAGC 1 cut(s) 208
PspN4I GGNNCC 1 cut(s) 154
PspOMI GGGCCC 1 cut(s) 152
PspPI GGNCC 3 cut(s) 152, 153, 291
PstI CTGCAG 1 cut(s) 336
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 2 cut(s) 39, 305
Sau96I GGNCC 3 cut(s) 152, 153, 291
SduI GDGCHC 2 cut(s) 156, 304
SetI ASST 1 cut(s) 102
SfaNI GCATC 1 cut(s) 256
SfcI CTRYAG 1 cut(s) 332
Sse9I AATT 2 cut(s) 196, 375
SsiI CCGC 3 cut(s) 80, 161, 183
SspMI CTAG 1 cut(s) 270
StyI CCWWGG 2 cut(s) 32, 258
TaaI ACNGT 1 cut(s) 236
TaqI TCGA 1 cut(s) 304
TasI AATT 2 cut(s) 196, 375
TauI GCSGC 1 cut(s) 164
TfiI GAWTC 1 cut(s) 320
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TspDTI ATGAA 2 cut(s) 118, 209
XapI RAATTY 1 cut(s) 196
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.