RLG00000004833

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000981
Physical Location & Seq
Forward (+)
62871238 .. 62871855
618 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004833

Sequence Viewer

Length: 474 bp
ATGCTCTCTCTTTCTCTAGAGAGAAAAGACCTAAGGCTGCAACCTGCCTTGATTGGAGGCGGCAGTACTGCAGATCTATTGACTCTTGGCAGAGAGGTTTTTCAGCTACGCAATGGCTCGGTTATTTGGGGCTGGAAGGGTGGCGGCTCGCCTCTTTCTTCTCTTCTACTTGGCAGCGATGGCGAATGGTTTCATCCGATCGGGGACATTTTGGAAGTGATGGATGGCTATAAACGAGCAATCTCTGAGGGTGTGGTGAGTGATCCCGGGGGCTATGCTAGATCGGGATTGGGTTCAAGCCGAGGAACTGCCGTGGACACGATTGTGTTCGGTAGATTTTGTGAAGAGGACGGGGCTGCTGAAGCGGCGGCTCTGACGGCGAGTGTCGGCGGCGACAGCGTGGCTGATGGATCGTGGCTGGAAAGATATGTGTGGGCTCATTGGGTTAGGGCTTTGGTTTACCCTACTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

16.63

Weight (kDa)

4.83

Isoelectric Point (pI)

30.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 52
AciI CCGC 5 cut(s) 60, 144, 365, 368, 390
AclWI GGATC 2 cut(s) 257, 418
AcuI CTGAAG 1 cut(s) 381
AfaI GTAC 1 cut(s) 67
AgsI TTSAA 1 cut(s) 297
AleI CACNNNNGTG 1 cut(s) 323
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
AlwI GGATC 2 cut(s) 257, 418
Ama87I CYCGRG 1 cut(s) 266
ApeKI GCWGC 3 cut(s) 37, 174, 356
Asp700I GAANNNNTTC 1 cut(s) 189
AsuC2I CCSGG 2 cut(s) 267, 268
AsuHPI GGTGA 1 cut(s) 268
AvaI CYCGRG 1 cut(s) 266
AxyI CCTNAGG 1 cut(s) 32
BanII GRGCYC 1 cut(s) 439
BbvI GCAGC 3 cut(s) 24, 186, 343
BccI CCATC 4 cut(s) 173, 214, 218, 401
BceAI ACGGC 2 cut(s) 296, 393
BcnI CCSGG 2 cut(s) 267, 268
BfaI CTAG 2 cut(s) 17, 279
BfmI CTRYAG 1 cut(s) 69
BfuAI ACCTGC 1 cut(s) 52
BglII AGATCT 1 cut(s) 73
BisI GCNGC 8 cut(s) 38, 61, 145, 175, 357, 366, 369, 391
BlsI GCNGC 8 cut(s) 39, 62, 146, 176, 358, 367, 370, 392
BmcAI AGTACT 1 cut(s) 67
Bme1390I CCNGG 2 cut(s) 267, 268
BmeT110I CYCGRG 1 cut(s) 266
BmrFI CCNGG 2 cut(s) 267, 268
BpuMI CCSGG 2 cut(s) 267, 268
BsaJI CCNNGG 4 cut(s) 266, 267, 301, 312
Bse21I CCTNAGG 1 cut(s) 32
Bse3DI GCAATG 1 cut(s) 118
BseDI CCNNGG 4 cut(s) 266, 267, 301, 312
BseGI GGATG 2 cut(s) 193, 229
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 237
BseXI GCAGC 3 cut(s) 24, 186, 343
Bsh1285I CGRYCG 1 cut(s) 201
BsiEI CGRYCG 1 cut(s) 201
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 1 cut(s) 267
BslFI GGGAC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 218
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 1 cut(s) 439
Bsp143I GATC 5 cut(s) 73, 198, 262, 281, 410
BspACI CCGC 5 cut(s) 60, 144, 365, 368, 390
BspCNI CTCAG 1 cut(s) 238
BspMAI CTGCAG 1 cut(s) 73
BspMI ACCTGC 1 cut(s) 52
BspPI GGATC 2 cut(s) 257, 418
BsrDI GCAATG 1 cut(s) 118
BssECI CCNNGG 4 cut(s) 266, 267, 301, 312
BssMI GATC 5 cut(s) 73, 198, 262, 281, 410
Bst6I CTCTTC 2 cut(s) 168, 339
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 2 cut(s) 32, 246
BstDSI CCRYGG 1 cut(s) 312
BstF5I GGATG 2 cut(s) 193, 229
BstKTI GATC 5 cut(s) 76, 201, 265, 284, 413
BstMBI GATC 5 cut(s) 73, 198, 262, 281, 410
BstMCI CGRYCG 1 cut(s) 201
BstMWI GCNNNNNNNGC 5 cut(s) 180, 362, 365, 377, 396
BstSCI CCNGG 2 cut(s) 265, 266
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 3 cut(s) 24, 186, 343
BstX2I RGATCY 1 cut(s) 73
BstYI RGATCY 1 cut(s) 73
Bsu36I CCTNAGG 1 cut(s) 32
BtgI CCRYGG 1 cut(s) 312
BtgZI GCGATG 1 cut(s) 192
BtsCI GGATG 2 cut(s) 193, 229
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 149
Cfr9I CCCGGG 1 cut(s) 266
Csp6I GTAC 1 cut(s) 66
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 2 cut(s) 32, 246
DpnI GATC 5 cut(s) 75, 200, 264, 283, 412
DpnII GATC 5 cut(s) 73, 198, 262, 281, 410
Eam1104I CTCTTC 2 cut(s) 168, 339
EarI CTCTTC 2 cut(s) 168, 339
Eco24I GRGCYC 1 cut(s) 439
Eco57I CTGAAG 1 cut(s) 381
Eco81I CCTNAGG 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 266
EcoT38I GRGCYC 1 cut(s) 439
FaiI YATR 3 cut(s) 231, 276, 429
FaqI GGGAC 1 cut(s) 218
Fnu4HI GCNGC 8 cut(s) 38, 61, 145, 175, 357, 366, 369, 391
FokI GGATG 2 cut(s) 180, 236
FriOI GRGCYC 1 cut(s) 439
Fsp4HI GCNGC 8 cut(s) 38, 61, 145, 175, 357, 366, 369, 391
FspBI CTAG 2 cut(s) 17, 279
GluI GCNGC 8 cut(s) 38, 61, 145, 175, 357, 366, 369, 391
HapII CCGG 1 cut(s) 267
HinfI GANTC 1 cut(s) 82
HpaII CCGG 1 cut(s) 267
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 2 cut(s) 316, 460
Hpy188I TCNGA 3 cut(s) 198, 247, 375
Hpy188III TCNNGA 2 cut(s) 17, 285
Hpy8I GTNNAC 2 cut(s) 316, 460
HpyAV CCTTC 1 cut(s) 130
HpyCH4V TGCA 2 cut(s) 40, 71
HpyF10VI GCNNNNNNNGC 5 cut(s) 180, 362, 365, 377, 396
HpyF3I CTNAG 2 cut(s) 32, 246
Kzo9I GATC 5 cut(s) 73, 198, 262, 281, 410
LpnPI CCDG 4 cut(s) 57, 118, 280, 404
Lsp1109I GCAGC 3 cut(s) 24, 186, 343
MaeI CTAG 2 cut(s) 17, 279
MalI GATC 5 cut(s) 75, 200, 264, 283, 412
MboI GATC 5 cut(s) 73, 198, 262, 281, 410
MboII GAAGA 3 cut(s) 150, 155, 356
MflI RGATCY 1 cut(s) 73
MhlI GDGCHC 1 cut(s) 439
MlyI GAGTC 1 cut(s) 76
MnlI CCTC 6 cut(s) 50, 88, 162, 241, 296, 340
MroXI GAANNNNTTC 1 cut(s) 189
MslI CAYNNNNRTG 1 cut(s) 323
MspI CCGG 1 cut(s) 267
MspR9I CCNGG 2 cut(s) 267, 268
MwoI GCNNNNNNNGC 5 cut(s) 180, 362, 365, 377, 396
NciI CCSGG 2 cut(s) 267, 268
NdeII GATC 5 cut(s) 73, 198, 262, 281, 410
NmeAIII GCCGAG 1 cut(s) 326
OliI CACNNNNGTG 1 cut(s) 323
PdmI GAANNNNTTC 1 cut(s) 189
PkrI GCNGC 8 cut(s) 39, 62, 146, 176, 358, 367, 370, 392
Ple19I CGATCG 1 cut(s) 201
PleI GAGTC 1 cut(s) 76
PpsI GAGTC 1 cut(s) 76
PstI CTGCAG 1 cut(s) 73
PsuI RGATCY 1 cut(s) 73
PvuI CGATCG 1 cut(s) 201
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 323
SatI GCNGC 8 cut(s) 38, 61, 145, 175, 357, 366, 369, 391
Sau3AI GATC 5 cut(s) 73, 198, 262, 281, 410
ScaI AGTACT 1 cut(s) 67
SchI GAGTC 1 cut(s) 76
ScrFI CCNGG 2 cut(s) 267, 268
SduI GDGCHC 1 cut(s) 439
SetI ASST 4 cut(s) 33, 46, 99, 108
SfcI CTRYAG 1 cut(s) 69
SmaI CCCGGG 1 cut(s) 268
SmiMI CAYNNNNRTG 1 cut(s) 323
SsiI CCGC 5 cut(s) 60, 144, 365, 368, 390
SspMI CTAG 2 cut(s) 17, 279
StyD4I CCNGG 2 cut(s) 265, 266
TatI WGTACW 1 cut(s) 65
TauI GCSGC 5 cut(s) 63, 147, 368, 371, 393
TseI GCWGC 3 cut(s) 37, 174, 356
TspDTI ATGAA 1 cut(s) 182
TspMI CCCGGG 1 cut(s) 266
XbaI TCTAGA 1 cut(s) 16
XmaI CCCGGG 1 cut(s) 266
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 2 cut(s) 17, 279
ZrmI AGTACT 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.