Rh5CG230200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000981
Physical Location & Seq
Reverse (-)
23804604 .. 23805835
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG230200.1

Sequence Viewer

Length: 714 bp
ATGGTTTTGGTTGTTCGTTTGGGAATGATTTTGGTGTCGCTGAGGTTAAGCGACGGTTTGGTGATGAAAGGCTTTGTTTCCGGAACCAACGAGGTTCTGGTGTTGAAGTCAGGTTTTGGGAGACTGATGGCGAGCACGATTATGAAGCGAGTTGCTGGATTACCGCCGAACAGGGTCGTTGATTCATGTTATTTGGCGGAGAAGGACGACGTCGGGGATTATGGGGGCTTTTTCTGGTCTGACTTTGATTTGACTGTCGGCGGTCATGGTGATGAGGTCGAGAGGCCATGGGTCAGATGCGGCATTGGCGTCTTCCAGATTGGGTTGTCTCTGACCATGGGCGTCAACAGTGGCGTCACAAGTGGCAAGTACGGCCTCGGTGGTAGCTTTTGCGCCGGTGCTGATGCTGACGCTTGGGTATGCGGCGTCTCGGTTGCTAGGGCTTCAAGGCTGAGTAGTTGGGCTCCAAACAGCAAGTTGGGTCTAATGGTGGATGTTTGCAATGTTCGCATTGATGTTGGATGTGGTGGTTCGCTGCAACGCGAGATTAGGCAATTTGTGGAGGCTGCTACTGCGGAGGTCGATGTGGAAGGGTTGGTGGTTATTGAGTTCCTCCTTTTCAACCTTGGGTGTAGGGAACTACTCCTTTCGATGGTGGTCTGTGTTACGGAGGTGTCTTTTTGTGGTGGTATAAGCAGTGGTGTTTCAACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

25.01

Weight (kDa)

4.96

Isoelectric Point (pI)

18.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 213
AccII CGCG 1 cut(s) 543
AccIII TCCGGA 1 cut(s) 80
AciI CCGC 6 cut(s) 164, 197, 261, 300, 423, 575
AcyI GRCGYC 5 cut(s) 210, 309, 342, 354, 426
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 1 cut(s) 652
AgsI TTSAA 4 cut(s) 106, 447, 622, 708
AluBI AGCT 1 cut(s) 387
AluI AGCT 1 cut(s) 387
Alw21I GWGCWC 1 cut(s) 137
Alw26I GTCTC 3 cut(s) 115, 333, 433
Aor13HI TCCGGA 1 cut(s) 80
AoxI GGCC 2 cut(s) 284, 373
ApeKI GCWGC 2 cut(s) 535, 566
AspLEI GCGC 1 cut(s) 395
AsuHPI GGTGA 2 cut(s) 73, 281
BanII GRGCYC 1 cut(s) 466
BbsI GAAGAC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 137
BbvCI CCTCAGC 1 cut(s) 41
BbvI GCAGC 2 cut(s) 522, 553
BccI CCATC 2 cut(s) 121, 646
BceAI ACGGC 1 cut(s) 388
BcoDI GTCTC 3 cut(s) 115, 333, 433
BfaI CTAG 1 cut(s) 438
BisI GCNGC 4 cut(s) 301, 424, 536, 567
BlsI GCNGC 4 cut(s) 302, 425, 537, 568
BmiI GGNNCC 2 cut(s) 85, 465
BmsI GCATC 2 cut(s) 287, 394
BpiI GAAGAC 1 cut(s) 304
Bpu10I CCTNAGC 1 cut(s) 41
BsaHI GRCGYC 5 cut(s) 210, 309, 342, 354, 426
BsaJI CCNNGG 4 cut(s) 287, 336, 376, 625
BsaWI WCCGGW 1 cut(s) 80
Bsc4I CCNNNNNNNGG 1 cut(s) 652
Bse118I RCCGGY 1 cut(s) 395
Bse3DI GCAATG 1 cut(s) 508
BseAI TCCGGA 1 cut(s) 80
BseDI CCNNGG 4 cut(s) 287, 336, 376, 625
BseGI GGATG 2 cut(s) 499, 527
BseLI CCNNNNNNNGG 1 cut(s) 652
BseMI GCAATG 1 cut(s) 508
BseMII CTCAG 2 cut(s) 32, 443
BseXI GCAGC 2 cut(s) 522, 553
Bsh1236I CGCG 1 cut(s) 543
BshFI GGCC 2 cut(s) 286, 375
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 2 cut(s) 81, 396
BslI CCNNNNNNNGG 1 cut(s) 652
BsmAI GTCTC 3 cut(s) 115, 333, 433
BsmBI CGTCTC 1 cut(s) 433
BsnI GGCC 2 cut(s) 286, 375
Bsp1286I GDGCHC 2 cut(s) 137, 466
Bsp13I TCCGGA 1 cut(s) 80
Bsp19I CCATGG 2 cut(s) 287, 336
BspACI CCGC 6 cut(s) 164, 197, 261, 300, 423, 575
BspANI GGCC 2 cut(s) 286, 375
BspCNI CTCAG 2 cut(s) 33, 444
BspEI TCCGGA 1 cut(s) 80
BspFNI CGCG 1 cut(s) 543
BspLI GGNNCC 2 cut(s) 85, 465
BsrDI GCAATG 1 cut(s) 508
BsrFI RCCGGY 1 cut(s) 395
BssAI RCCGGY 1 cut(s) 395
BssECI CCNNGG 4 cut(s) 287, 336, 376, 625
BssNI GRCGYC 5 cut(s) 210, 309, 342, 354, 426
BssT1I CCWWGG 3 cut(s) 287, 336, 625
Bst4CI ACNGT 3 cut(s) 56, 256, 350
BstACI GRCGYC 5 cut(s) 210, 309, 342, 354, 426
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 2 cut(s) 41, 452
BstDSI CCRYGG 2 cut(s) 287, 336
BstF5I GGATG 2 cut(s) 499, 527
BstFNI CGCG 1 cut(s) 543
BstHHI GCGC 1 cut(s) 395
BstMAI GTCTC 3 cut(s) 115, 333, 433
BstMWI GCNNNNNNNGC 4 cut(s) 306, 372, 507, 572
BstUI CGCG 1 cut(s) 543
BstV1I GCAGC 2 cut(s) 522, 553
BstV2I GAAGAC 1 cut(s) 304
BsuRI GGCC 2 cut(s) 286, 375
BtgI CCRYGG 2 cut(s) 287, 336
BtsCI GGATG 2 cut(s) 499, 527
BtsI GCAGTG 1 cut(s) 703
BtsIMutI CAGTG 2 cut(s) 355, 703
Cac8I GCNNGC 1 cut(s) 133
CfoI GCGC 1 cut(s) 395
Cfr10I RCCGGY 1 cut(s) 395
CseI GACGC 5 cut(s) 298, 331, 343, 415, 419
Csp6I GTAC 1 cut(s) 370
CviAII CATG 5 cut(s) 186, 266, 288, 337, 711
CviJI RGCY 9 cut(s) 72, 228, 286, 375, 387, 443, 451, 464, 566
CviKI_1 RGCY 9 cut(s) 72, 228, 286, 375, 387, 443, 451, 464, 566
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 2 cut(s) 41, 452
EciI GGCGGA 1 cut(s) 212
Eco130I CCWWGG 3 cut(s) 287, 336, 625
Eco24I GRGCYC 1 cut(s) 466
EcoT14I CCWWGG 3 cut(s) 287, 336, 625
EcoT38I GRGCYC 1 cut(s) 466
ErhI CCWWGG 3 cut(s) 287, 336, 625
Esp3I CGTCTC 1 cut(s) 433
FaeI CATG 5 cut(s) 189, 269, 291, 340, 714
FaiI YATR 9 cut(s) 143, 187, 222, 267, 289, 338, 421, 692, 712
FatI CATG 5 cut(s) 185, 265, 287, 336, 710
Fnu4HI GCNGC 4 cut(s) 301, 424, 536, 567
FokI GGATG 2 cut(s) 506, 534
FriOI GRGCYC 1 cut(s) 466
Fsp4HI GCNGC 4 cut(s) 301, 424, 536, 567
FspBI CTAG 1 cut(s) 438
GlaI GCGC 1 cut(s) 394
GluI GCNGC 4 cut(s) 301, 424, 536, 567
HaeIII GGCC 2 cut(s) 286, 375
HapII CCGG 2 cut(s) 81, 396
HgaI GACGC 5 cut(s) 298, 331, 343, 415, 419
HhaI GCGC 1 cut(s) 395
Hin1I GRCGYC 5 cut(s) 210, 309, 342, 354, 426
Hin1II CATG 5 cut(s) 189, 269, 291, 340, 714
Hin6I GCGC 1 cut(s) 393
HinP1I GCGC 1 cut(s) 393
HincII GTYRAC 1 cut(s) 346
HindII GTYRAC 1 cut(s) 346
HinfI GANTC 1 cut(s) 182
HpaII CCGG 2 cut(s) 81, 396
HphI GGTGA 2 cut(s) 73, 281
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 3 cut(s) 241, 296, 333
Hpy188III TCNNGA 3 cut(s) 81, 280, 316
Hpy8I GTNNAC 1 cut(s) 346
Hpy99I CGWCG 3 cut(s) 56, 212, 215
HpyAV CCTTC 2 cut(s) 196, 584
HpyCH4III ACNGT 3 cut(s) 56, 256, 350
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 2 cut(s) 501, 538
HpyF10VI GCNNNNNNNGC 4 cut(s) 306, 372, 507, 572
HpyF3I CTNAG 2 cut(s) 41, 452
HpySE526I ACGT 1 cut(s) 210
Hsp92I GRCGYC 5 cut(s) 210, 309, 342, 354, 426
Hsp92II CATG 5 cut(s) 189, 269, 291, 340, 714
HspAI GCGC 1 cut(s) 393
Kpn2I TCCGGA 1 cut(s) 80
LmnI GCTCC 1 cut(s) 469
LpnPI CCDG 8 cut(s) 83, 94, 96, 141, 157, 220, 329, 409
Lsp1109I GCAGC 2 cut(s) 522, 553
LweI GCATC 2 cut(s) 287, 394
MaeI CTAG 1 cut(s) 438
MaeII ACGT 1 cut(s) 210
MaeIII GTNAC 2 cut(s) 355, 664
MboII GAAGA 1 cut(s) 304
MhlI GDGCHC 2 cut(s) 137, 466
MluCI AATT 1 cut(s) 554
MmeI TCCRAC 1 cut(s) 499
MnlI CCTC 9 cut(s) 36, 85, 268, 276, 386, 556, 571, 623, 664
MroI TCCGGA 1 cut(s) 80
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 2 cut(s) 140, 270
MspI CCGG 2 cut(s) 81, 396
MvnI CGCG 1 cut(s) 543
MwoI GCNNNNNNNGC 4 cut(s) 306, 372, 507, 572
NcoI CCATGG 2 cut(s) 287, 336
NlaIII CATG 5 cut(s) 189, 269, 291, 340, 714
NlaIV GGNNCC 2 cut(s) 85, 465
NmuCI GTSAC 1 cut(s) 355
PfeI GAWTC 1 cut(s) 182
PflFI GACNNNGTC 1 cut(s) 209
PkrI GCNGC 4 cut(s) 302, 425, 537, 568
PspN4I GGNNCC 2 cut(s) 85, 465
PsyI GACNNNGTC 1 cut(s) 209
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
RseI CAYNNNNRTG 2 cut(s) 140, 270
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 4 cut(s) 301, 424, 536, 567
SduI GDGCHC 2 cut(s) 137, 466
SetI ASST 9 cut(s) 47, 96, 115, 213, 279, 389, 582, 627, 675
SfaNI GCATC 2 cut(s) 287, 394
SgrAI CRCCGGYG 1 cut(s) 395
SmiMI CAYNNNNRTG 2 cut(s) 140, 270
Sse9I AATT 1 cut(s) 554
SsiI CCGC 6 cut(s) 164, 197, 261, 300, 423, 575
SspMI CTAG 1 cut(s) 438
StyI CCWWGG 3 cut(s) 287, 336, 625
TaaI ACNGT 3 cut(s) 56, 256, 350
TaiI ACGT 1 cut(s) 213
TaqI TCGA 3 cut(s) 279, 582, 650
TasI AATT 1 cut(s) 554
TauI GCSGC 2 cut(s) 303, 426
TfiI GAWTC 1 cut(s) 182
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 2 cut(s) 355, 703
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 2 cut(s) 535, 566
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 3 cut(s) 80, 158, 174
TspGWI ACGGA 1 cut(s) 683
TspRI CASTG 2 cut(s) 355, 703
Tth111I GACNNNGTC 1 cut(s) 209
XcmI CCANNNNNNNNNTGG 1 cut(s) 94
XspI CTAG 1 cut(s) 438
ZraI GACGTC 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.