Rroxscaffold_1G00019920

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000981
Physical Location & Seq
Forward (+)
24332475 .. 24332933
459 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00019920.1

Sequence Viewer

Length: 459 bp
ATGATTTCGGTGTCGCTGAGGTTCAGCGACGGTTTGGTGATGAAAGGCTTTGTTTCCGAAATCGACGGAGCTCTGGTGTTGAAGTCGGGCTTTGGGAGACTGACGGCGAGCACGATTATGAAGCGAGTTGCTGGATTACCGCGGGACAGGGTCGTTGACTCATGTTATTTGGCGGAGAAGGACGACGTCGGTGATTATGGGGGCTTTTGGTCTGACTTTGATTTGACTGCTGGCGGTCATGGTGATGAGGTCGAGAGGCTATGGGTCAGATGCGGCATCGGCGTCTTCCAGATTGGGTTGTCTCTGACCGTGGGCATCGGCGGTGGCGTCACAAGTGGCAGATATGACCTCGGTGGTAGCTTTTGCACCGGTGCTGATGCTGACGCTTGGGTATGCGGAGTCTCAATTGCTAGGGCGTCAAGGCTGAGTGGTTGGGCTCCAACAGCAAGTTGGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

15.94

Weight (kDa)

5.03

Isoelectric Point (pI)

20.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 189
AccII CGCG 1 cut(s) 142
AciI CCGC 7 cut(s) 140, 142, 173, 234, 273, 321, 396
AcyI GRCGYC 4 cut(s) 186, 282, 327, 416
AgeI ACCGGT 1 cut(s) 368
AgsI TTSAA 1 cut(s) 82
AluBI AGCT 2 cut(s) 71, 360
AluI AGCT 2 cut(s) 71, 360
Alw21I GWGCWC 2 cut(s) 73, 113
Alw26I GTCTC 3 cut(s) 91, 306, 406
AoxI GGCC 1 cut(s) 453
AsiGI ACCGGT 1 cut(s) 368
AspS9I GGNCC 1 cut(s) 453
AsuHPI GGTGA 3 cut(s) 49, 203, 254
BanII GRGCYC 2 cut(s) 73, 439
BbsI GAAGAC 1 cut(s) 277
Bbv12I GWGCWC 2 cut(s) 73, 113
BbvCI CCTCAGC 1 cut(s) 17
BceAI ACGGC 1 cut(s) 120
BcoDI GTCTC 3 cut(s) 91, 306, 406
BfaI CTAG 1 cut(s) 411
BisI GCNGC 1 cut(s) 274
BlsI GCNGC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 453
BmiI GGNNCC 1 cut(s) 438
BmsI GCATC 4 cut(s) 260, 285, 324, 367
BpiI GAAGAC 1 cut(s) 277
Bpu10I CCTNAGC 1 cut(s) 17
BsaHI GRCGYC 4 cut(s) 186, 282, 327, 416
BsaJI CCNNGG 3 cut(s) 140, 309, 349
BsaWI WCCGGW 1 cut(s) 368
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bse118I RCCGGY 1 cut(s) 368
BseDI CCNNGG 3 cut(s) 140, 309, 349
BseMII CTCAG 2 cut(s) 8, 416
Bsh1236I CGCG 1 cut(s) 142
BshFI GGCC 1 cut(s) 455
BshTI ACCGGT 1 cut(s) 368
BsiHKAI GWGCWC 2 cut(s) 73, 113
BsiSI CCGG 1 cut(s) 369
BslFI GGGAC 1 cut(s) 158
BsmAI GTCTC 3 cut(s) 91, 306, 406
BsmFI GGGAC 1 cut(s) 158
BsnI GGCC 1 cut(s) 455
Bsp1286I GDGCHC 3 cut(s) 73, 113, 439
BspACI CCGC 7 cut(s) 140, 142, 173, 234, 273, 321, 396
BspANI GGCC 1 cut(s) 455
BspCNI CTCAG 2 cut(s) 9, 417
BspFNI CGCG 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 438
BsrFI RCCGGY 1 cut(s) 368
BssAI RCCGGY 1 cut(s) 368
BssECI CCNNGG 3 cut(s) 140, 309, 349
BssNI GRCGYC 4 cut(s) 186, 282, 327, 416
Bst4CI ACNGT 2 cut(s) 32, 310
BstACI GRCGYC 4 cut(s) 186, 282, 327, 416
BstC8I GCNNGC 2 cut(s) 109, 232
BstDEI CTNAG 2 cut(s) 17, 425
BstDSI CCRYGG 2 cut(s) 140, 309
BstFNI CGCG 1 cut(s) 142
BstMAI GTCTC 3 cut(s) 91, 306, 406
BstMWI GCNNNNNNNGC 3 cut(s) 279, 443, 452
BstUI CGCG 1 cut(s) 142
BstV2I GAAGAC 1 cut(s) 277
BsuRI GGCC 1 cut(s) 455
BtgI CCRYGG 2 cut(s) 140, 309
Cac8I GCNNGC 2 cut(s) 109, 232
Cfr10I RCCGGY 1 cut(s) 368
Cfr13I GGNCC 1 cut(s) 453
Cfr42I CCGCGG 1 cut(s) 143
CseI GACGC 4 cut(s) 271, 316, 392, 405
CspAI ACCGGT 1 cut(s) 368
CviAII CATG 2 cut(s) 162, 239
CviJI RGCY 9 cut(s) 48, 71, 90, 204, 259, 360, 424, 437, 455
CviKI_1 RGCY 9 cut(s) 48, 71, 90, 204, 259, 360, 424, 437, 455
DdeI CTNAG 2 cut(s) 17, 425
EciI GGCGGA 1 cut(s) 188
Ecl136II GAGCTC 1 cut(s) 71
Eco24I GRGCYC 2 cut(s) 73, 439
Eco53kI GAGCTC 1 cut(s) 71
EcoICRI GAGCTC 1 cut(s) 71
EcoT38I GRGCYC 2 cut(s) 73, 439
FaeI CATG 2 cut(s) 165, 242
FaiI YATR 7 cut(s) 119, 163, 198, 240, 262, 345, 394
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FaqI GGGAC 1 cut(s) 158
FatI CATG 2 cut(s) 161, 238
FauI CCCGC 1 cut(s) 135
Fnu4HI GCNGC 1 cut(s) 274
FriOI GRGCYC 2 cut(s) 73, 439
Fsp4HI GCNGC 1 cut(s) 274
FspBI CTAG 1 cut(s) 411
GluI GCNGC 1 cut(s) 274
HaeIII GGCC 1 cut(s) 455
HapII CCGG 1 cut(s) 369
HgaI GACGC 4 cut(s) 271, 316, 392, 405
Hin1I GRCGYC 4 cut(s) 186, 282, 327, 416
Hin1II CATG 2 cut(s) 165, 242
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 2 cut(s) 158, 399
HpaII CCGG 1 cut(s) 369
HphI GGTGA 3 cut(s) 49, 203, 254
Hpy166II GTNNAC 1 cut(s) 157
Hpy188I TCNGA 4 cut(s) 58, 214, 269, 306
Hpy188III TCNNGA 2 cut(s) 253, 289
Hpy8I GTNNAC 1 cut(s) 157
Hpy99I CGWCG 4 cut(s) 32, 68, 188, 191
HpyAV CCTTC 1 cut(s) 172
HpyCH4III ACNGT 2 cut(s) 32, 310
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 366
HpyF10VI GCNNNNNNNGC 3 cut(s) 279, 443, 452
HpyF3I CTNAG 2 cut(s) 17, 425
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 4 cut(s) 186, 282, 327, 416
Hsp92II CATG 2 cut(s) 165, 242
KspI CCGCGG 1 cut(s) 143
LmnI GCTCC 2 cut(s) 68, 442
LpnPI CCDG 6 cut(s) 59, 117, 133, 216, 302, 382
LweI GCATC 4 cut(s) 260, 285, 324, 367
MaeI CTAG 1 cut(s) 411
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 328
MboII GAAGA 1 cut(s) 277
MfeI CAATTG 1 cut(s) 405
MhlI GDGCHC 3 cut(s) 73, 113, 439
MluCI AATT 1 cut(s) 405
MlyI GAGTC 2 cut(s) 152, 408
MnlI CCTC 4 cut(s) 12, 241, 249, 359
MslI CAYNNNNRTG 2 cut(s) 116, 243
MspA1I CMGCKG 1 cut(s) 142
MspI CCGG 1 cut(s) 369
MunI CAATTG 1 cut(s) 405
MvnI CGCG 1 cut(s) 142
MwoI GCNNNNNNNGC 3 cut(s) 279, 443, 452
NlaIII CATG 2 cut(s) 165, 242
NlaIV GGNNCC 1 cut(s) 438
NmuCI GTSAC 1 cut(s) 328
PcsI WCGNNNNNNNCGW 2 cut(s) 110, 324
PflFI GACNNNGTC 2 cut(s) 149, 185
PinAI ACCGGT 1 cut(s) 368
PkrI GCNGC 1 cut(s) 275
PleI GAGTC 2 cut(s) 152, 407
PpsI GAGTC 2 cut(s) 152, 407
Psp124BI GAGCTC 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 438
PspPI GGNCC 1 cut(s) 453
PsyI GACNNNGTC 2 cut(s) 149, 185
RseI CAYNNNNRTG 2 cut(s) 116, 243
SacI GAGCTC 1 cut(s) 73
SacII CCGCGG 1 cut(s) 143
SatI GCNGC 1 cut(s) 274
Sau96I GGNCC 1 cut(s) 453
SchI GAGTC 2 cut(s) 152, 408
SduI GDGCHC 3 cut(s) 73, 113, 439
SetI ASST 6 cut(s) 23, 73, 189, 252, 351, 362
SfaNI GCATC 4 cut(s) 260, 285, 324, 367
Sfr303I CCGCGG 1 cut(s) 143
SgrAI CRCCGGYG 1 cut(s) 368
SgrBI CCGCGG 1 cut(s) 143
SmiMI CAYNNNNRTG 2 cut(s) 116, 243
Sse9I AATT 1 cut(s) 405
SsiI CCGC 7 cut(s) 140, 142, 173, 234, 273, 321, 396
SspMI CTAG 1 cut(s) 411
SstI GAGCTC 1 cut(s) 73
TaaI ACNGT 2 cut(s) 32, 310
TaiI ACGT 1 cut(s) 189
TaqI TCGA 2 cut(s) 63, 252
TasI AATT 1 cut(s) 405
TauI GCSGC 1 cut(s) 276
TseFI GTSAC 1 cut(s) 328
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 2 cut(s) 56, 134
TspGWI ACGGA 1 cut(s) 81
Tth111I GACNNNGTC 2 cut(s) 149, 185
XcmI CCANNNNNNNNNTGG 1 cut(s) 447
XspI CTAG 1 cut(s) 411
ZraI GACGTC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.