Rroxscaffold_3G00246460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000981
Physical Location & Seq
Forward (+)
39573487 .. 39573962
476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00246460.1

Sequence Viewer

Length: 399 bp
ATGACTCTCTGGTTGTTGTCGACGAGGTCGGGCAATTGTTTCTTCTGTGATGTCGGCAAAGCTGCGGTGCTTGATGCAAGGCCGCCGCGGAGTTTCTTTGCCTCCGGTGGTGGCAATGGTGACGTGAGGGGCGGTGGTATGTCTTGGTGTGCTGGTGGCAACAACGACGGTAGGGGCGGTGGCAATCCAAGGATAGTGGCATGGAAGATGGTCATTGGGCTTCTAGGTCGGGCATTTTGGGCTCCACTTTGGATGTTGGCCTTTTTATGGGCTGGACATGGAATTGCTTGTGTCTCTTACTGGACTGAGGTTGTTTGGGGTTTCTTACTTTGGGCGGCTCTAATAAATGAAGATGGAGTAGATGGTGACACATCATCCTCTACTCCAAATGTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.0

Weight (kDa)

6.52

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 20
AccII CGCG 1 cut(s) 88
AciI CCGC 7 cut(s) 65, 83, 86, 88, 132, 177, 335
AfiI CCNNNNNNNGG 1 cut(s) 267
AjiI CACGTC 1 cut(s) 124
AluBI AGCT 1 cut(s) 62
AluI AGCT 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 298
AoxI GGCC 2 cut(s) 80, 258
ApeKI GCWGC 1 cut(s) 62
AsuHPI GGTGA 2 cut(s) 131, 377
BanII GRGCYC 1 cut(s) 244
BbvI GCAGC 1 cut(s) 49
BccI CCATC 3 cut(s) 202, 347, 356
BcoDI GTCTC 1 cut(s) 298
BfaI CTAG 1 cut(s) 224
BisI GCNGC 4 cut(s) 63, 83, 86, 336
BlsI GCNGC 4 cut(s) 64, 84, 87, 337
BmgBI CACGTC 1 cut(s) 124
BmiI GGNNCC 1 cut(s) 243
BmsI GCATC 1 cut(s) 64
BsaJI CCNNGG 2 cut(s) 86, 188
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 1 cut(s) 267
Bse1I ACTGG 1 cut(s) 305
Bse3DI GCAATG 1 cut(s) 121
BseDI CCNNGG 2 cut(s) 86, 188
BseGI GGATG 2 cut(s) 258, 374
BseLI CCNNNNNNNGG 1 cut(s) 267
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 49
Bsh1236I CGCG 1 cut(s) 88
BshFI GGCC 2 cut(s) 82, 260
BsiSI CCGG 1 cut(s) 105
BslI CCNNNNNNNGG 1 cut(s) 267
BsmAI GTCTC 1 cut(s) 298
BsnI GGCC 2 cut(s) 82, 260
Bsp1286I GDGCHC 1 cut(s) 244
BspACI CCGC 7 cut(s) 65, 83, 86, 88, 132, 177, 335
BspANI GGCC 2 cut(s) 82, 260
BspCNI CTCAG 1 cut(s) 298
BspFNI CGCG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 243
BsrDI GCAATG 1 cut(s) 121
BsrI ACTGG 1 cut(s) 305
BssECI CCNNGG 2 cut(s) 86, 188
BssT1I CCWWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 306
BstDSI CCRYGG 1 cut(s) 86
BstF5I GGATG 2 cut(s) 258, 374
BstFNI CGCG 1 cut(s) 88
BstMAI GTCTC 1 cut(s) 298
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstUI CGCG 1 cut(s) 88
BstV1I GCAGC 1 cut(s) 49
BsuRI GGCC 2 cut(s) 82, 260
BtgI CCRYGG 1 cut(s) 86
BtrI CACGTC 1 cut(s) 124
BtsCI GGATG 2 cut(s) 258, 374
Cfr42I CCGCGG 1 cut(s) 89
CspCI CAANNNNNGTGG 2 cut(s) 177, 212
CviAII CATG 2 cut(s) 201, 278
CviJI RGCY 7 cut(s) 62, 82, 220, 242, 260, 272, 338
CviKI_1 RGCY 7 cut(s) 62, 82, 220, 242, 260, 272, 338
DdeI CTNAG 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 244
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 2 cut(s) 204, 281
FaiI YATR 4 cut(s) 140, 202, 268, 279
FatI CATG 2 cut(s) 200, 277
FblI GTMKAC 1 cut(s) 20
Fnu4HI GCNGC 4 cut(s) 63, 83, 86, 336
FokI GGATG 2 cut(s) 265, 361
FriOI GRGCYC 1 cut(s) 244
Fsp4HI GCNGC 4 cut(s) 63, 83, 86, 336
FspBI CTAG 1 cut(s) 224
GluI GCNGC 4 cut(s) 63, 83, 86, 336
HaeIII GGCC 2 cut(s) 82, 260
HapII CCGG 1 cut(s) 105
Hin1II CATG 2 cut(s) 204, 281
HincII GTYRAC 1 cut(s) 21
HindII GTYRAC 1 cut(s) 21
HinfI GANTC 1 cut(s) 4
HpaII CCGG 1 cut(s) 105
HphI GGTGA 2 cut(s) 131, 377
Hpy166II GTNNAC 1 cut(s) 21
Hpy8I GTNNAC 1 cut(s) 21
Hpy99I CGWCG 2 cut(s) 25, 170
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 306
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 2 cut(s) 204, 281
KspI CCGCGG 1 cut(s) 89
LmnI GCTCC 1 cut(s) 247
LpnPI CCDG 4 cut(s) 118, 138, 258, 286
Lsp1109I GCAGC 1 cut(s) 49
LweI GCATC 1 cut(s) 64
MaeI CTAG 1 cut(s) 224
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 2 cut(s) 119, 365
MboII GAAGA 3 cut(s) 34, 217, 362
MfeI CAATTG 1 cut(s) 34
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 2 cut(s) 34, 282
MnlI CCTC 5 cut(s) 18, 112, 120, 301, 388
MspA1I CMGCKG 1 cut(s) 88
MspI CCGG 1 cut(s) 105
MunI CAATTG 1 cut(s) 34
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 1 cut(s) 239
NlaIII CATG 2 cut(s) 204, 281
NlaIV GGNNCC 1 cut(s) 243
NmuCI GTSAC 2 cut(s) 119, 365
PflFI GACNNNGTC 1 cut(s) 25
PkrI GCNGC 4 cut(s) 64, 84, 87, 337
PspN4I GGNNCC 1 cut(s) 243
PsyI GACNNNGTC 1 cut(s) 25
SacII CCGCGG 1 cut(s) 89
SalI GTCGAC 1 cut(s) 19
SatI GCNGC 4 cut(s) 63, 83, 86, 336
SduI GDGCHC 1 cut(s) 244
SetI ASST 5 cut(s) 29, 64, 126, 229, 312
SfaNI GCATC 1 cut(s) 64
Sfr303I CCGCGG 1 cut(s) 89
SgrBI CCGCGG 1 cut(s) 89
Sse9I AATT 2 cut(s) 34, 282
SsiI CCGC 7 cut(s) 65, 83, 86, 88, 132, 177, 335
SspMI CTAG 1 cut(s) 224
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 1 cut(s) 170
TaiI ACGT 1 cut(s) 126
TaqI TCGA 1 cut(s) 20
TasI AATT 2 cut(s) 34, 282
TauI GCSGC 3 cut(s) 85, 88, 338
TseFI GTSAC 2 cut(s) 119, 365
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 2 cut(s) 119, 365
TspDTI ATGAA 1 cut(s) 363
Tth111I GACNNNGTC 1 cut(s) 25
XmiI GTMKAC 1 cut(s) 20
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.