RLG00000006679

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000981
Physical Location & Seq
Reverse (-)
9585232 .. 9585693
462 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006679

Sequence Viewer

Length: 462 bp
ATGGTTTTGGTTGTTCGTTTGGGAATGATTTTGGTGTCGCTGAGGTTAAGCAACGGTTTGGTGATGAAAGGCTTTGTTTCCGGAACCGACGGAGTTCTGGTGTTGAAGTCGGGTTTTGGGAGACTGACGGCGAGCACCATTGTGAAGCGAGTTGCTGGATTACCACGGGACAGGGTCGTTGACTCATGTTATTTGGCGGAGAAGGATGACGTCGGTGATTATGGGGGCTTTTTCTGGTTTGACTTTGATTTGACTGCCGGCAGTCATGGTGATGAGGTCGAGAGGCCATGGGTTAGATGCGGCATCGGCGTCTTCCAGATTGGGTTGTCTCTGACCATGGACGTCGGTGGTGGCGTCACAAGTGGCAGGTACGGCCTCGATGGTAGCTTTTGCGCCAGTGCTGATGCTGACGCTTGGGTATGCGGTGTCTCAGTTGCTAGGGCGTCAAGGTTGAGTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.12

Weight (kDa)

5.74

Isoelectric Point (pI)

13.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 213, 345
Acc36I ACCTGC 1 cut(s) 357
AccIII TCCGGA 1 cut(s) 80
AciI CCGC 3 cut(s) 197, 300, 423
AcyI GRCGYC 5 cut(s) 210, 309, 342, 354, 443
AfaI GTAC 1 cut(s) 371
AgsI TTSAA 1 cut(s) 106
AleI CACNNNNGTG 1 cut(s) 140
AluBI AGCT 1 cut(s) 387
AluI AGCT 1 cut(s) 387
Alw21I GWGCWC 1 cut(s) 137
Alw26I GTCTC 3 cut(s) 115, 333, 433
Aor13HI TCCGGA 1 cut(s) 80
AoxI GGCC 2 cut(s) 284, 373
AspLEI GCGC 1 cut(s) 395
AsuHPI GGTGA 3 cut(s) 73, 227, 281
BbsI GAAGAC 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 137
BbvCI CCTCAGC 1 cut(s) 41
BccI CCATC 1 cut(s) 374
BceAI ACGGC 2 cut(s) 144, 388
BcoDI GTCTC 3 cut(s) 115, 333, 433
BfaI CTAG 1 cut(s) 438
BfuAI ACCTGC 1 cut(s) 357
BisI GCNGC 1 cut(s) 301
BlsI GCNGC 1 cut(s) 302
BmiI GGNNCC 1 cut(s) 85
BmsI GCATC 3 cut(s) 287, 312, 394
BpiI GAAGAC 1 cut(s) 304
Bpu10I CCTNAGC 1 cut(s) 41
BsaHI GRCGYC 5 cut(s) 210, 309, 342, 354, 443
BsaJI CCNNGG 3 cut(s) 164, 287, 336
BsaWI WCCGGW 1 cut(s) 80
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 396
BseAI TCCGGA 1 cut(s) 80
BseDI CCNNGG 3 cut(s) 164, 287, 336
BseGI GGATG 1 cut(s) 211
BseMII CTCAG 2 cut(s) 32, 444
BseNI ACTGG 1 cut(s) 396
BshFI GGCC 2 cut(s) 286, 375
BsiHKAI GWGCWC 1 cut(s) 137
BsiSI CCGG 2 cut(s) 81, 258
BslFI GGGAC 1 cut(s) 182
BsmAI GTCTC 3 cut(s) 115, 333, 433
BsmFI GGGAC 1 cut(s) 182
BsnI GGCC 2 cut(s) 286, 375
Bsp1286I GDGCHC 1 cut(s) 137
Bsp13I TCCGGA 1 cut(s) 80
Bsp19I CCATGG 2 cut(s) 287, 336
BspACI CCGC 3 cut(s) 197, 300, 423
BspANI GGCC 2 cut(s) 286, 375
BspCNI CTCAG 2 cut(s) 33, 443
BspEI TCCGGA 1 cut(s) 80
BspLI GGNNCC 1 cut(s) 85
BspMI ACCTGC 1 cut(s) 357
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 1 cut(s) 396
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 3 cut(s) 164, 287, 336
BssNI GRCGYC 5 cut(s) 210, 309, 342, 354, 443
BssT1I CCWWGG 2 cut(s) 287, 336
Bst4CI ACNGT 1 cut(s) 56
BstACI GRCGYC 5 cut(s) 210, 309, 342, 354, 443
BstC8I GCNNGC 2 cut(s) 133, 259
BstDEI CTNAG 2 cut(s) 41, 430
BstDSI CCRYGG 3 cut(s) 164, 287, 336
BstF5I GGATG 1 cut(s) 211
BstHHI GCGC 1 cut(s) 395
BstMAI GTCTC 3 cut(s) 115, 333, 433
BstMWI GCNNNNNNNGC 2 cut(s) 306, 372
BstV2I GAAGAC 1 cut(s) 304
BsuRI GGCC 2 cut(s) 286, 375
BtgI CCRYGG 3 cut(s) 164, 287, 336
BtsCI GGATG 1 cut(s) 211
BtsIMutI CAGTG 1 cut(s) 403
BveI ACCTGC 1 cut(s) 357
Cac8I GCNNGC 2 cut(s) 133, 259
CfoI GCGC 1 cut(s) 395
Cfr10I RCCGGY 1 cut(s) 257
CseI GACGC 4 cut(s) 298, 343, 419, 432
Csp6I GTAC 1 cut(s) 370
CviAII CATG 4 cut(s) 186, 266, 288, 337
CviJI RGCY 5 cut(s) 72, 228, 286, 375, 387
CviKI_1 RGCY 5 cut(s) 72, 228, 286, 375, 387
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 2 cut(s) 41, 430
EciI GGCGGA 1 cut(s) 212
Eco130I CCWWGG 2 cut(s) 287, 336
EcoT14I CCWWGG 2 cut(s) 287, 336
ErhI CCWWGG 2 cut(s) 287, 336
FaeI CATG 4 cut(s) 189, 269, 291, 340
FaiI YATR 6 cut(s) 187, 222, 267, 289, 338, 421
FaqI GGGAC 1 cut(s) 182
FatI CATG 4 cut(s) 185, 265, 287, 336
Fnu4HI GCNGC 1 cut(s) 301
FokI GGATG 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 301
FspBI CTAG 1 cut(s) 438
GlaI GCGC 1 cut(s) 394
GluI GCNGC 1 cut(s) 301
HaeIII GGCC 2 cut(s) 286, 375
HapII CCGG 2 cut(s) 81, 258
HgaI GACGC 4 cut(s) 298, 343, 419, 432
HhaI GCGC 1 cut(s) 395
Hin1I GRCGYC 5 cut(s) 210, 309, 342, 354, 443
Hin1II CATG 4 cut(s) 189, 269, 291, 340
Hin6I GCGC 1 cut(s) 393
HinP1I GCGC 1 cut(s) 393
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 1 cut(s) 182
HpaII CCGG 2 cut(s) 81, 258
HphI GGTGA 3 cut(s) 73, 227, 281
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 1 cut(s) 333
Hpy188III TCNNGA 3 cut(s) 81, 280, 316
Hpy8I GTNNAC 1 cut(s) 181
Hpy99I CGWCG 3 cut(s) 92, 215, 347
HpyAV CCTTC 1 cut(s) 196
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4IV ACGT 2 cut(s) 210, 342
HpyF10VI GCNNNNNNNGC 2 cut(s) 306, 372
HpyF3I CTNAG 2 cut(s) 41, 430
HpySE526I ACGT 2 cut(s) 210, 342
Hsp92I GRCGYC 5 cut(s) 210, 309, 342, 354, 443
Hsp92II CATG 4 cut(s) 189, 269, 291, 340
HspAI GCGC 1 cut(s) 393
Kpn2I TCCGGA 1 cut(s) 80
KroI GCCGGC 1 cut(s) 257
KroNI GCCGGC 1 cut(s) 259
LpnPI CCDG 9 cut(s) 83, 94, 141, 157, 220, 271, 329, 352, 409
LweI GCATC 3 cut(s) 287, 312, 394
MaeI CTAG 1 cut(s) 438
MaeII ACGT 2 cut(s) 210, 342
MaeIII GTNAC 1 cut(s) 355
MboII GAAGA 1 cut(s) 304
MhlI GDGCHC 1 cut(s) 137
MlyI GAGTC 1 cut(s) 176
MnlI CCTC 4 cut(s) 36, 268, 276, 386
MroI TCCGGA 1 cut(s) 80
MroNI GCCGGC 1 cut(s) 257
MseI TTAA 1 cut(s) 47
MslI CAYNNNNRTG 2 cut(s) 140, 270
MspI CCGG 2 cut(s) 81, 258
MwoI GCNNNNNNNGC 2 cut(s) 306, 372
NaeI GCCGGC 1 cut(s) 259
NcoI CCATGG 2 cut(s) 287, 336
NgoMIV GCCGGC 1 cut(s) 257
NlaIII CATG 4 cut(s) 189, 269, 291, 340
NlaIV GGNNCC 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 355
OliI CACNNNNGTG 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 351
PdiI GCCGGC 1 cut(s) 259
PflFI GACNNNGTC 1 cut(s) 173
PkrI GCNGC 1 cut(s) 302
PleI GAGTC 1 cut(s) 176
PpsI GAGTC 1 cut(s) 176
PspN4I GGNNCC 1 cut(s) 85
PsyI GACNNNGTC 1 cut(s) 173
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
RseI CAYNNNNRTG 2 cut(s) 140, 270
SaqAI TTAA 1 cut(s) 47
SatI GCNGC 1 cut(s) 301
SchI GAGTC 1 cut(s) 176
SduI GDGCHC 1 cut(s) 137
SetI ASST 7 cut(s) 47, 213, 279, 345, 371, 389, 452
SfaNI GCATC 3 cut(s) 287, 312, 394
SmiMI CAYNNNNRTG 2 cut(s) 140, 270
SsiI CCGC 3 cut(s) 197, 300, 423
SspMI CTAG 1 cut(s) 438
StyI CCWWGG 2 cut(s) 287, 336
TaaI ACNGT 1 cut(s) 56
TaiI ACGT 2 cut(s) 213, 345
TaqI TCGA 2 cut(s) 279, 378
TauI GCSGC 1 cut(s) 303
Tru1I TTAA 1 cut(s) 47
Tru9I TTAA 1 cut(s) 47
TscAI CASTG 1 cut(s) 403
TseFI GTSAC 1 cut(s) 355
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 1 cut(s) 80
TspGWI ACGGA 1 cut(s) 105
TspRI CASTG 1 cut(s) 403
Tth111I GACNNNGTC 1 cut(s) 173
XspI CTAG 1 cut(s) 438
ZraI GACGTC 2 cut(s) 211, 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.