RLG00000000594

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000981
Physical Location & Seq
Forward (+)
2404034 .. 2407371
3338 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000594

Sequence Viewer

Length: 645 bp
ATGCTCTCTCTTTCTCTCTCGAGTGCAACCCTAAGGTCGTCACCATTGTTGATTGGCGGTGGCGCTACAAACTCCTTGACTCTCGACAAAGAGATTTCTCGGCTACGAAGTGGCCCTGTACCTTGGGTATGGAAGGATGGCTGGGCCGCTCTTTCTACTCATCTCCTTGATGGCAACGGCGATTGGATTCCACGGTACTCTTCAAGTTTCAATCAGGTTCATCTCCTTGGGGGATCGAAGCCTCAAATGATGGTCATCTGGCCCGTGATGGTGCGTGGCTCCTCGCCTTCAATCCTGTCAGTGACAAGCGAATCAGAGGCGATCGGTGACTGGGTTTGTTTGAGGCCGGCTCTGATGAGCGACAACGATTTTGCAGGTTTAGGTCTTTGGTGTTTCCCTGCCAGCAAAGGTGGTGGCGGATCCATGGCGGAGGCATTTTGTGGTGGCGGCTTACCCATGATCACAACTGCGGCAACACCAATTCTCGAAGAGGACGTCGGAGTGGAGGAGGCCGAGGTAGAAGACTGCAAGCTTGTGGAGGGAGGACCAGCCGCCGGGAGGCTCGGAGGAGGTGGCGGAGACAAGATCGGAGATGACGGAGGCGGGTCCAGTTGCGAGGGTCGTCCTCCAATTCTTGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

22.05

Weight (kDa)

4.57

Isoelectric Point (pI)

55.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 498
Acc36I ACCTGC 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 149
AciI CCGC 9 cut(s) 57, 147, 417, 428, 447, 470, 552, 576, 603
AclWI GGATC 3 cut(s) 241, 414, 427
AcyI GRCGYC 1 cut(s) 495
AfaI GTAC 2 cut(s) 120, 197
AfiI CCNNNNNNNGG 2 cut(s) 554, 558
AgsI TTSAA 3 cut(s) 204, 211, 291
AluBI AGCT 1 cut(s) 532
AluI AGCT 1 cut(s) 532
Alw26I GTCTC 1 cut(s) 573
AlwI GGATC 3 cut(s) 241, 414, 427
Ama87I CYCGRG 1 cut(s) 19
AoxI GGCC 5 cut(s) 112, 144, 260, 344, 510
ArsI GACNNNNNNTTYG 4 cut(s) 353, 385, 480, 512
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 5 cut(s) 113, 144, 261, 545, 606
AsuC2I CCSGG 1 cut(s) 556
AsuHPI GGTGA 2 cut(s) 33, 338
AvaI CYCGRG 1 cut(s) 19
AvaII GGWCC 2 cut(s) 545, 606
AxyI CCTNAGG 1 cut(s) 32
BamHI GGATCC 1 cut(s) 419
BbsI GAAGAC 1 cut(s) 528
BccI CCATC 4 cut(s) 131, 164, 244, 262
BceAI ACGGC 1 cut(s) 193
BclI TGATCA 1 cut(s) 459
BcnI CCSGG 1 cut(s) 556
BcoDI GTCTC 1 cut(s) 573
BfoI RGCGCY 1 cut(s) 66
BfuAI ACCTGC 1 cut(s) 365
BisI GCNGC 4 cut(s) 147, 448, 471, 552
BlsI GCNGC 4 cut(s) 148, 449, 472, 553
Bme1390I CCNGG 1 cut(s) 556
Bme18I GGWCC 2 cut(s) 545, 606
BmeT110I CYCGRG 1 cut(s) 19
BmgT120I GGNCC 5 cut(s) 113, 144, 261, 545, 606
BmiI GGNNCC 3 cut(s) 280, 421, 607
BmrFI CCNGG 1 cut(s) 556
BmrI ACTGGG 1 cut(s) 340
BmuI ACTGGG 1 cut(s) 340
BpiI GAAGAC 1 cut(s) 528
BplI GAGNNNNNCTC 2 cut(s) 334, 366
BpuMI CCSGG 1 cut(s) 556
BsaBI GATNNNNATC 1 cut(s) 254
BsaHI GRCGYC 1 cut(s) 495
BsaJI CCNNGG 5 cut(s) 122, 191, 226, 423, 513
Bsc4I CCNNNNNNNGG 2 cut(s) 554, 558
Bse118I RCCGGY 1 cut(s) 346
Bse1I ACTGG 2 cut(s) 335, 609
Bse21I CCTNAGG 1 cut(s) 32
Bse8I GATNNNNATC 1 cut(s) 254
BseDI CCNNGG 5 cut(s) 122, 191, 226, 423, 513
BseGI GGATG 1 cut(s) 142
BseJI GATNNNNATC 1 cut(s) 254
BseLI CCNNNNNNNGG 2 cut(s) 554, 558
BseNI ACTGG 2 cut(s) 335, 609
BseRI GAGGAG 3 cut(s) 271, 521, 582
BseYI CCCAGC 1 cut(s) 141
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 5 cut(s) 114, 146, 262, 346, 512
BsiEI CGRYCG 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 19
BsiSI CCGG 2 cut(s) 347, 555
BslI CCNNNNNNNGG 2 cut(s) 554, 558
BsmAI GTCTC 1 cut(s) 573
BsnI GGCC 5 cut(s) 114, 146, 262, 346, 512
BsoBI CYCGRG 1 cut(s) 19
Bsp143I GATC 5 cut(s) 233, 321, 419, 459, 585
Bsp19I CCATGG 1 cut(s) 423
BspACI CCGC 9 cut(s) 57, 147, 417, 428, 447, 470, 552, 576, 603
BspANI GGCC 5 cut(s) 114, 146, 262, 346, 512
BspLI GGNNCC 3 cut(s) 280, 421, 607
BspMI ACCTGC 1 cut(s) 365
BspPI GGATC 3 cut(s) 241, 414, 427
BsrBI CCGCTC 1 cut(s) 149
BsrFI RCCGGY 1 cut(s) 346
BsrI ACTGG 2 cut(s) 335, 609
BssAI RCCGGY 1 cut(s) 346
BssECI CCNNGG 5 cut(s) 122, 191, 226, 423, 513
BssMI GATC 5 cut(s) 233, 321, 419, 459, 585
BssNI GRCGYC 1 cut(s) 495
BssT1I CCWWGG 3 cut(s) 122, 226, 423
Bst4CI ACNGT 1 cut(s) 195
Bst6I CTCTTC 2 cut(s) 205, 483
BstACI GRCGYC 1 cut(s) 495
BstC8I GCNNGC 3 cut(s) 348, 403, 530
BstDEI CTNAG 1 cut(s) 32
BstDSI CCRYGG 2 cut(s) 191, 423
BstF5I GGATG 1 cut(s) 142
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 5 cut(s) 236, 324, 422, 462, 588
BstMAI GTCTC 1 cut(s) 573
BstMBI GATC 5 cut(s) 233, 321, 419, 459, 585
BstMCI CGRYCG 1 cut(s) 324
BstSCI CCNGG 1 cut(s) 554
BstV2I GAAGAC 1 cut(s) 528
BstX2I RGATCY 1 cut(s) 419
BstYI RGATCY 1 cut(s) 419
Bsu36I CCTNAGG 1 cut(s) 32
BsuRI GGCC 5 cut(s) 114, 146, 262, 346, 512
BtgI CCRYGG 2 cut(s) 191, 423
BtsCI GGATG 1 cut(s) 142
BtsIMutI CAGTG 1 cut(s) 306
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 3 cut(s) 348, 403, 530
CfoI GCGC 1 cut(s) 65
Cfr10I RCCGGY 1 cut(s) 346
Cfr13I GGNCC 5 cut(s) 113, 144, 261, 545, 606
Csp6I GTAC 2 cut(s) 119, 196
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviAII CATG 2 cut(s) 424, 457
CviQI GTAC 2 cut(s) 119, 196
DdeI CTNAG 1 cut(s) 32
DpnI GATC 5 cut(s) 235, 323, 421, 461, 587
DpnII GATC 5 cut(s) 233, 321, 419, 459, 585
Eam1104I CTCTTC 2 cut(s) 205, 483
EarI CTCTTC 2 cut(s) 205, 483
EciI GGCGGA 3 cut(s) 432, 443, 591
Eco130I CCWWGG 3 cut(s) 122, 226, 423
Eco47I GGWCC 2 cut(s) 545, 606
Eco81I CCTNAGG 1 cut(s) 32
Eco88I CYCGRG 1 cut(s) 19
EcoT14I CCWWGG 3 cut(s) 122, 226, 423
ErhI CCWWGG 3 cut(s) 122, 226, 423
FaeI CATG 2 cut(s) 427, 460
FaiI YATR 3 cut(s) 130, 425, 458
FatI CATG 2 cut(s) 423, 456
FauI CCCGC 1 cut(s) 596
FbaI TGATCA 1 cut(s) 459
Fnu4HI GCNGC 4 cut(s) 147, 448, 471, 552
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 4 cut(s) 147, 448, 471, 552
GlaI GCGC 1 cut(s) 64
GluI GCNGC 4 cut(s) 147, 448, 471, 552
GsaI CCCAGC 1 cut(s) 145
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 5 cut(s) 114, 146, 262, 346, 512
HapII CCGG 2 cut(s) 347, 555
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 495
Hin1II CATG 2 cut(s) 427, 460
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 3 cut(s) 79, 187, 311
HpaII CCGG 2 cut(s) 347, 555
HphI GGTGA 2 cut(s) 33, 338
Hpy188I TCNGA 5 cut(s) 316, 354, 500, 566, 590
Hpy188III TCNNGA 3 cut(s) 19, 83, 485
Hpy99I CGWCG 1 cut(s) 500
HpyAV CCTTC 2 cut(s) 127, 297
HpyCH4III ACNGT 1 cut(s) 195
HpyCH4IV ACGT 1 cut(s) 495
HpyCH4V TGCA 4 cut(s) 26, 374, 528, 638
HpyF3I CTNAG 1 cut(s) 32
HpySE526I ACGT 1 cut(s) 495
Hsp92I GRCGYC 1 cut(s) 495
Hsp92II CATG 2 cut(s) 427, 460
HspAI GCGC 1 cut(s) 63
KroI GCCGGC 1 cut(s) 346
KroNI GCCGGC 1 cut(s) 348
Ksp22I TGATCA 1 cut(s) 459
Kzo9I GATC 5 cut(s) 233, 321, 419, 459, 585
LmnI GCTCC 1 cut(s) 284
MaeII ACGT 1 cut(s) 495
MaeIII GTNAC 3 cut(s) 39, 301, 326
MalI GATC 5 cut(s) 235, 323, 421, 461, 587
MbiI CCGCTC 1 cut(s) 149
MboI GATC 5 cut(s) 233, 321, 419, 459, 585
MboII GAAGA 3 cut(s) 192, 500, 533
MflI RGATCY 1 cut(s) 419
MluCI AATT 2 cut(s) 480, 630
MlyI GAGTC 1 cut(s) 73
MmeI TCCRAC 1 cut(s) 478
MroNI GCCGGC 1 cut(s) 346
MspI CCGG 2 cut(s) 347, 555
MspR9I CCNGG 1 cut(s) 556
NaeI GCCGGC 1 cut(s) 348
NciI CCSGG 1 cut(s) 556
NcoI CCATGG 1 cut(s) 423
NdeII GATC 5 cut(s) 233, 321, 419, 459, 585
NgoMIV GCCGGC 1 cut(s) 346
NlaIII CATG 2 cut(s) 427, 460
NlaIV GGNNCC 3 cut(s) 280, 421, 607
NmeAIII GCCGAG 2 cut(s) 79, 538
NmuCI GTSAC 3 cut(s) 39, 301, 326
PaeR7I CTCGAG 1 cut(s) 19
PcsI WCGNNNNNNNCGW 1 cut(s) 492
PdiI GCCGGC 1 cut(s) 348
PfeI GAWTC 2 cut(s) 187, 311
PkrI GCNGC 4 cut(s) 148, 449, 472, 553
Ple19I CGATCG 1 cut(s) 324
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PspFI CCCAGC 1 cut(s) 141
PspN4I GGNNCC 3 cut(s) 280, 421, 607
PspPI GGNCC 5 cut(s) 113, 144, 261, 545, 606
PsuI RGATCY 1 cut(s) 419
PvuI CGATCG 1 cut(s) 324
RsaI GTAC 2 cut(s) 120, 197
RsaNI GTAC 2 cut(s) 119, 196
SatI GCNGC 4 cut(s) 147, 448, 471, 552
Sau3AI GATC 5 cut(s) 233, 321, 419, 459, 585
Sau96I GGNCC 5 cut(s) 113, 144, 261, 545, 606
SchI GAGTC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 556
Sfr274I CTCGAG 1 cut(s) 19
SinI GGWCC 2 cut(s) 545, 606
SlaI CTCGAG 1 cut(s) 19
SmlI CTYRAG 1 cut(s) 19
SmoI CTYRAG 1 cut(s) 19
Sse9I AATT 2 cut(s) 480, 630
SsiI CCGC 9 cut(s) 57, 147, 417, 428, 447, 470, 552, 576, 603
StyD4I CCNGG 1 cut(s) 554
StyI CCWWGG 3 cut(s) 122, 226, 423
TaaI ACNGT 1 cut(s) 195
TaiI ACGT 1 cut(s) 498
TaqI TCGA 4 cut(s) 20, 84, 236, 486
TasI AATT 2 cut(s) 480, 630
TauI GCSGC 4 cut(s) 149, 450, 473, 554
TfiI GAWTC 2 cut(s) 187, 311
TscAI CASTG 1 cut(s) 306
TseFI GTSAC 3 cut(s) 39, 301, 326
Tsp45I GTSAC 3 cut(s) 39, 301, 326
TspDTI ATGAA 1 cut(s) 209
TspGWI ACGGA 1 cut(s) 612
TspRI CASTG 1 cut(s) 306
VpaK11BI GGWCC 2 cut(s) 545, 606
XhoI CTCGAG 1 cut(s) 19
ZraI GACGTC 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.