Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000981

Physical Location & Seq

Genomic Coordinates Reverse (-)

18985469 .. 18986097

Gene Structure 629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028123

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGACGCTCTCTTTTTGTCTCTCTCGAGCAACCCTAAGGTTGCAGCCCGCCTTGATTAGCAGTGGCAGCACTGCAAATTTCCTGACTCTCGGCAGAGAGGTTTCTCATCCACGTTGTGGCTCTGCACCTTCGATTTGGAAGGGCAGCGACATCTCTCTTTCTTCTCCCCTCCTTGGTGACGTCAGTGTTTGGCTTCGACATCCCTTTATTATCTCTCTGGATTGGTTTTGTCTTCTGGAAGGATCGGAGATTCTGATGGCAGTCATCTTGGCTGAGATGGCGCAAGTTTCCTTGACTTCAAGCTCGTCTGGGATAGGTGGAGCAGGGCATTTAGGCGTCGGCCGGAGTGGACTCAGATGGGATTGTTCGATTTTTATGGTGGTTGAGGACACTGTGATCGGTGGCGAATCGGTTTCCCCTTCGACGGTAAAGATTGCAGCTGGGTTGCAATTAAACTGTGACGATGGTGATGGTGATCTTTCTCCTATGATGGATTGCGGCGGTGATGGGACAAGCTGTGGCGGCAGTGGTGAGGGTGGTCCTGCTGAGGGCGGCGGCTGTTTGGTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

191

Amino Acids

19.39

Weight (kDa)

4.47

Isoelectric Point (pI)

54.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000981)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0486651 RchiOBHm_Chr4g0407841 RchiOBHm_Chr6g0312071 RchiOBHm_Chr6g0312081 RchiOBHm_Chr7g0199951
rosa_laevigata	RLG00000000594 RLG00000001567 RLG00000001832 RLG00000004637 RLG00000004640 RLG00000004833 RLG00000006679 RLG00000007158 RLG00000008694 RLG00000009075 RLG00000011512 RLG00000012673 RLG00000015109 RLG00000016150 RLG00000017316 RLG00000019776 RLG00000020284 RLG00000020334 RLG00000021424 RLG00000021718 RLG00000022244 RLG00000023069 RLG00000023643 RLG00000025130 RLG00000027919 RLG00000028123 RLG00000029202 RLG00000030087 RLG00000035075 RLG00000035197 RLG00000035409 RLG00000035824
rosa_multiflora	Rmu_sc0002613.1_g000004 Rmu_ssc0000041.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019920 Rroxscaffold_2G00115510 Rroxscaffold_3G00246460 Rroxscaffold_3G00264120 Rroxscaffold_5G00344800 Rroxscaffold_6G00403360 Rroxscaffold_7G00204700
rosa_rugosa	Rorug02G0168200 Rorug05G0236500 Rorug05G0287700 Rorug05G0492800 Rorug06G0461500 Rorug06G0495600
rosa_samantha	Rh1CG201100 Rh1DG303400 Rh2BG472700 Rh3AG275800 Rh5BG139300 Rh5CG230200 Rh5DG114300 Rh6AG509200 Rh6BG248700 Rh6CG280300 Rh6DG402300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	183
AccB7I	CCANNNNNTGG	1 cut(s)	116
AciI	CCGC	6 cut(s)	48, 498, 501, 522, 552, 555
AclWI	GGATC	1 cut(s)	250
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	1 cut(s)	76
AcyI	GRCGYC	2 cut(s)	180, 336
AdeI	CACNNNGTG	1 cut(s)	116
AfiI	CCNNNNNNNGG	4 cut(s)	116, 173, 424, 548
AgsI	TTSAA	1 cut(s)	300
AluBI	AGCT	3 cut(s)	303, 440, 516
AluI	AGCT	3 cut(s)	303, 440, 516
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	1 cut(s)	250
Ama87I	CYCGRG	1 cut(s)	24
AoxI	GGCC	1 cut(s)	340
ApeKI	GCWGC	4 cut(s)	43, 66, 144, 437
ApoI	RAATTY	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	539
AsuHPI	GGTGA	5 cut(s)	188, 479, 485, 515, 542
AvaI	CYCGRG	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	539
AxyI	CCTNAGG	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	224
BbvCI	CCTCAGC	1 cut(s)	546
BbvI	GCAGC	4 cut(s)	55, 78, 156, 449
BccI	CCATC	7 cut(s)	250, 271, 351, 458, 464, 484, 500
BcoDI	GTCTC	1 cut(s)	23
BisI	GCNGC	8 cut(s)	44, 67, 145, 438, 499, 523, 553, 556
BlsI	GCNGC	8 cut(s)	45, 68, 146, 439, 500, 524, 554, 557
Bme18I	GGWCC	1 cut(s)	539
BmeT110I	CYCGRG	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	539
BpiI	GAAGAC	1 cut(s)	224
Bpu10I	CCTNAGC	1 cut(s)	546
BsaBI	GATNNNNATC	1 cut(s)	474
BsaHI	GRCGYC	2 cut(s)	180, 336
BsaJI	CCNNGG	1 cut(s)	172
Bsc4I	CCNNNNNNNGG	4 cut(s)	116, 173, 424, 548
Bse21I	CCTNAGG	1 cut(s)	35
Bse8I	GATNNNNATC	1 cut(s)	474
BseDI	CCNNGG	1 cut(s)	172
BseGI	GGATG	2 cut(s)	106, 199
BseJI	GATNNNNATC	1 cut(s)	474
BseLI	CCNNNNNNNGG	4 cut(s)	116, 173, 424, 548
BseMII	CTCAG	3 cut(s)	264, 367, 537
BseX3I	CGGCCG	1 cut(s)	340
BseXI	GCAGC	4 cut(s)	55, 78, 156, 449
BseYI	CCCAGC	1 cut(s)	440
BsgI	GTGCAG	1 cut(s)	108
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	1 cut(s)	342
BsiEI	CGRYCG	1 cut(s)	343
BsiHKCI	CYCGRG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	343
BslFI	GGGAC	1 cut(s)	523
BslI	CCNNNNNNNGG	4 cut(s)	116, 173, 424, 548
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	523
BsnI	GGCC	1 cut(s)	342
BsoBI	CYCGRG	1 cut(s)	24
Bsp143I	GATC	3 cut(s)	242, 396, 475
BspACI	CCGC	6 cut(s)	48, 498, 501, 522, 552, 555
BspANI	GGCC	1 cut(s)	342
BspCNI	CTCAG	3 cut(s)	265, 366, 538
BspPI	GGATC	1 cut(s)	250
BssECI	CCNNGG	1 cut(s)	172
BssMI	GATC	3 cut(s)	242, 396, 475
BssNI	GRCGYC	2 cut(s)	180, 336
BssT1I	CCWWGG	1 cut(s)	172
Bst4CI	ACNGT	3 cut(s)	394, 427, 458
BstACI	GRCGYC	2 cut(s)	180, 336
BstC8I	GCNNGC	1 cut(s)	48
BstDEI	CTNAG	4 cut(s)	35, 273, 353, 546
BstF5I	GGATG	2 cut(s)	106, 199
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	3 cut(s)	245, 399, 478
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	3 cut(s)	242, 396, 475
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 278, 522
BstV1I	GCAGC	4 cut(s)	55, 78, 156, 449
BstV2I	GAAGAC	1 cut(s)	224
BstZI	CGGCCG	1 cut(s)	340
Bsu36I	CCTNAGG	1 cut(s)	35
BsuRI	GGCC	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	106, 199
BtsI	GCAGTG	3 cut(s)	67, 69, 532
BtsIMutI	CAGTG	5 cut(s)	67, 69, 190, 390, 532
Cac8I	GCNNGC	1 cut(s)	48
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	539
CseI	GACGC	2 cut(s)	13, 325
CviJI	RGCY	9 cut(s)	46, 120, 193, 272, 303, 342, 440, 516, 558
CviKI_1	RGCY	9 cut(s)	46, 120, 193, 272, 303, 342, 440, 516, 558
DdeI	CTNAG	4 cut(s)	35, 273, 353, 546
DpnI	GATC	3 cut(s)	244, 398, 477
DpnII	GATC	3 cut(s)	242, 396, 475
DraIII	CACNNNGTG	1 cut(s)	116
EaeI	YGGCCR	1 cut(s)	340
EagI	CGGCCG	1 cut(s)	340
EclXI	CGGCCG	1 cut(s)	340
Eco130I	CCWWGG	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	539
Eco52I	CGGCCG	1 cut(s)	340
Eco81I	CCTNAGG	1 cut(s)	35
Eco88I	CYCGRG	1 cut(s)	24
EcoT14I	CCWWGG	1 cut(s)	172
ErhI	CCWWGG	1 cut(s)	172
FaiI	YATR	2 cut(s)	377, 488
FaqI	GGGAC	1 cut(s)	523
FauI	CCCGC	1 cut(s)	55
Fnu4HI	GCNGC	8 cut(s)	44, 67, 145, 438, 499, 523, 553, 556
FokI	GGATG	2 cut(s)	93, 186
Fsp4HI	GCNGC	8 cut(s)	44, 67, 145, 438, 499, 523, 553, 556
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	8 cut(s)	44, 67, 145, 438, 499, 523, 553, 556
GsaI	CCCAGC	1 cut(s)	444
HaeIII	GGCC	1 cut(s)	342
HapII	CCGG	1 cut(s)	343
HgaI	GACGC	2 cut(s)	13, 325
HhaI	GCGC	1 cut(s)	283
Hin1I	GRCGYC	2 cut(s)	180, 336
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HinfI	GANTC	4 cut(s)	85, 250, 351, 407
HpaII	CCGG	1 cut(s)	343
HphI	GGTGA	5 cut(s)	188, 479, 485, 515, 542
Hpy166II	GTNNAC	1 cut(s)	350
Hpy188I	TCNGA	3 cut(s)	247, 255, 356
Hpy188III	TCNNGA	4 cut(s)	24, 82, 218, 236
Hpy8I	GTNNAC	1 cut(s)	350
Hpy99I	CGWCG	2 cut(s)	341, 427
HpyAV	CCTTC	4 cut(s)	133, 138, 233, 429
HpyCH4III	ACNGT	3 cut(s)	394, 427, 458
HpyCH4IV	ACGT	2 cut(s)	112, 180
HpyCH4V	TGCA	5 cut(s)	43, 74, 125, 437, 448
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 278, 522
HpyF3I	CTNAG	4 cut(s)	35, 273, 353, 546
HpySE526I	ACGT	2 cut(s)	112, 180
Hsp92I	GRCGYC	2 cut(s)	180, 336
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	3 cut(s)	242, 396, 475
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	8 cut(s)	95, 203, 221, 294, 309, 356, 426, 555
Lsp1109I	GCAGC	4 cut(s)	55, 78, 156, 449
MaeII	ACGT	2 cut(s)	112, 180
MaeIII	GTNAC	2 cut(s)	176, 458
MalI	GATC	3 cut(s)	244, 398, 477
MboI	GATC	3 cut(s)	242, 396, 475
MboII	GAAGA	2 cut(s)	153, 224
MluCI	AATT	3 cut(s)	76, 449, 568
MlyI	GAGTC	2 cut(s)	79, 345
MnlI	CCTC	5 cut(s)	91, 179, 379, 526, 541
MseI	TTAA	1 cut(s)	452
MspA1I	CMGCKG	1 cut(s)	440
MspI	CCGG	1 cut(s)	343
MwoI	GCNNNNNNNGC	3 cut(s)	66, 278, 522
NdeII	GATC	3 cut(s)	242, 396, 475
NmeAIII	GCCGAG	1 cut(s)	69
NmuCI	GTSAC	2 cut(s)	176, 458
PaeR7I	CTCGAG	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	250, 407
PflMI	CCANNNNNTGG	1 cut(s)	116
PkrI	GCNGC	8 cut(s)	45, 68, 146, 439, 500, 524, 554, 557
PleI	GAGTC	2 cut(s)	79, 345
PpsI	GAGTC	2 cut(s)	79, 345
PspFI	CCCAGC	1 cut(s)	440
PspPI	GGNCC	1 cut(s)	539
PvuII	CAGCTG	1 cut(s)	440
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	8 cut(s)	44, 67, 145, 438, 499, 523, 553, 556
Sau3AI	GATC	3 cut(s)	242, 396, 475
Sau96I	GGNCC	1 cut(s)	539
SchI	GAGTC	2 cut(s)	79, 345
SetI	ASST	9 cut(s)	41, 102, 115, 130, 183, 305, 319, 442, 518
Sfr274I	CTCGAG	1 cut(s)	24
SinI	GGWCC	1 cut(s)	539
SlaI	CTCGAG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	24
SmoI	CTYRAG	1 cut(s)	24
Sse9I	AATT	3 cut(s)	76, 449, 568
SsiI	CCGC	6 cut(s)	48, 498, 501, 522, 552, 555
StyI	CCWWGG	1 cut(s)	172
TaaI	ACNGT	3 cut(s)	394, 427, 458
TaiI	ACGT	2 cut(s)	115, 183
TaqI	TCGA	5 cut(s)	25, 131, 196, 368, 422
TasI	AATT	3 cut(s)	76, 449, 568
TauI	GCSGC	4 cut(s)	501, 525, 555, 558
TfiI	GAWTC	2 cut(s)	250, 407
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TscAI	CASTG	5 cut(s)	67, 76, 190, 397, 532
TseFI	GTSAC	2 cut(s)	176, 458
TseI	GCWGC	4 cut(s)	43, 66, 144, 437
Tsp45I	GTSAC	2 cut(s)	176, 458
TspRI	CASTG	5 cut(s)	67, 76, 190, 397, 532
Van91I	CCANNNNNTGG	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	539
XapI	RAATTY	1 cut(s)	76
XhoI	CTCGAG	1 cut(s)	24
ZraI	GACGTC	1 cut(s)	181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.