Rroxscaffold_7G00204700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000981
Physical Location & Seq
Forward (+)
54179911 .. 54180366
456 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00204700.1

Sequence Viewer

Length: 456 bp
ATGGTGGTCCGATGGGCTGCGAAGACTCGAGATGGTCTCTCATCGGCGTCAAGCGGCGCGGGCTGTTCGCTACGGGCGAGGTCGGATGGGGACTGGTTGTTGGGCGGGGTCGAGGATATCCGGGTTCGGATCCGATCGGGGACGGTTGGAAGTGATGGAGGGCGTGATCGAGCACTCTGCGAGGGTGTGGTGAGTGATCCCGGGGGCTATGCTAGATCGGGATCGGATTCGAGCCAAGGAAGCTGTTGCGGTGCTGGAACGGCGGCTCGGACGGCGAGTGTACGCGGCGGCGGCGGCGGCGTGGGCGATGGATCGTGGGCGGAAAGATATGTGTGGGCTCATTGGGTTAGGGCTTTGGTTTACCCTACTCTTTGGGCCTGCATTTGGAGTGGATGGGTTGCATGGGCCTTGATCGGTACGTGGGCTGGATTACCCTTATGCTATGGGGCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

15.54

Weight (kDa)

8.64

Isoelectric Point (pI)

32.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 59, 285
AclWI GGATC 5 cut(s) 124, 137, 191, 229, 319
AcyI GRCGYC 1 cut(s) 47
AfaI GTAC 2 cut(s) 282, 418
AfiI CCNNNNNNNGG 1 cut(s) 384
AluBI AGCT 1 cut(s) 243
AluI AGCT 1 cut(s) 243
Alw21I GWGCWC 1 cut(s) 175
Alw26I GTCTC 1 cut(s) 41
AlwI GGATC 5 cut(s) 124, 137, 191, 229, 319
Ama87I CYCGRG 2 cut(s) 27, 200
AoxI GGCC 2 cut(s) 375, 405
ApeKI GCWGC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 3 cut(s) 7, 375, 405
AsuC2I CCSGG 3 cut(s) 122, 201, 202
AsuHPI GGTGA 1 cut(s) 202
AvaI CYCGRG 2 cut(s) 27, 200
AvaII GGWCC 1 cut(s) 7
BamHI GGATCC 1 cut(s) 129
BanII GRGCYC 1 cut(s) 340
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 1 cut(s) 4
BccI CCATC 6 cut(s) 6, 26, 80, 149, 302, 387
BceAI ACGGC 2 cut(s) 276, 288
BcgI CGANNNNNNTGC 2 cut(s) 159, 193
BcnI CCSGG 3 cut(s) 122, 201, 202
BcoDI GTCTC 1 cut(s) 41
BfaI CTAG 1 cut(s) 213
BisI GCNGC 8 cut(s) 18, 55, 264, 286, 289, 292, 295, 298
BlsI GCNGC 8 cut(s) 19, 56, 265, 287, 290, 293, 296, 299
Bme1390I CCNGG 3 cut(s) 122, 201, 202
Bme18I GGWCC 1 cut(s) 7
BmeT110I CYCGRG 2 cut(s) 27, 200
BmgT120I GGNCC 3 cut(s) 7, 375, 405
BmiI GGNNCC 1 cut(s) 131
BmrFI CCNGG 3 cut(s) 122, 201, 202
BpiI GAAGAC 1 cut(s) 29
BplI GAGNNNNNCTC 2 cut(s) 21, 53
BpuMI CCSGG 3 cut(s) 122, 201, 202
BsaAI YACGTR 1 cut(s) 420
BsaBI GATNNNNATC 1 cut(s) 220
BsaHI GRCGYC 1 cut(s) 47
BsaI GGTCTC 1 cut(s) 41
BsaJI CCNNGG 3 cut(s) 200, 201, 235
Bsc4I CCNNNNNNNGG 1 cut(s) 384
Bse1I ACTGG 1 cut(s) 98
Bse8I GATNNNNATC 1 cut(s) 220
BseDI CCNNGG 3 cut(s) 200, 201, 235
BseGI GGATG 2 cut(s) 91, 398
BseJI GATNNNNATC 1 cut(s) 220
BseLI CCNNNNNNNGG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 98
BseXI GCAGC 1 cut(s) 4
Bsh1236I CGCG 2 cut(s) 59, 285
Bsh1285I CGRYCG 1 cut(s) 137
BshFI GGCC 2 cut(s) 377, 407
BsiEI CGRYCG 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 175
BsiHKCI CYCGRG 2 cut(s) 27, 200
BsiSI CCGG 2 cut(s) 121, 201
BslFI GGGAC 2 cut(s) 104, 154
BslI CCNNNNNNNGG 1 cut(s) 384
BsmAI GTCTC 1 cut(s) 41
BsmFI GGGAC 2 cut(s) 104, 154
BsnI GGCC 2 cut(s) 377, 407
Bso31I GGTCTC 1 cut(s) 41
BsoBI CYCGRG 2 cut(s) 27, 200
Bsp1286I GDGCHC 2 cut(s) 175, 340
Bsp143I GATC 8 cut(s) 129, 134, 166, 196, 215, 221, 311, 411
BspANI GGCC 2 cut(s) 377, 407
BspFNI CGCG 2 cut(s) 59, 285
BspLI GGNNCC 1 cut(s) 131
BspPI GGATC 5 cut(s) 124, 137, 191, 229, 319
BspTNI GGTCTC 1 cut(s) 41
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 3 cut(s) 200, 201, 235
BssMI GATC 8 cut(s) 129, 134, 166, 196, 215, 221, 311, 411
BssNI GRCGYC 1 cut(s) 47
BssT1I CCWWGG 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 145
BstACI GRCGYC 1 cut(s) 47
BstBAI YACGTR 1 cut(s) 420
BstC8I GCNNGC 2 cut(s) 61, 379
BstF5I GGATG 2 cut(s) 91, 398
BstFNI CGCG 2 cut(s) 59, 285
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 8 cut(s) 132, 137, 169, 199, 218, 224, 314, 414
BstMAI GTCTC 1 cut(s) 41
BstMBI GATC 8 cut(s) 129, 134, 166, 196, 215, 221, 311, 411
BstMCI CGRYCG 1 cut(s) 137
BstMWI GCNNNNNNNGC 8 cut(s) 60, 240, 260, 272, 291, 294, 297, 303
BstSCI CCNGG 3 cut(s) 120, 199, 200
BstUI CGCG 2 cut(s) 59, 285
BstV1I GCAGC 1 cut(s) 4
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 129
BstYI RGATCY 1 cut(s) 129
BsuRI GGCC 2 cut(s) 377, 407
BtgZI GCGATG 1 cut(s) 321
BtsCI GGATG 2 cut(s) 91, 398
Cac8I GCNNGC 2 cut(s) 61, 379
CfoI GCGC 1 cut(s) 59
Cfr13I GGNCC 3 cut(s) 7, 375, 405
Cfr9I CCCGGG 1 cut(s) 200
CseI GACGC 1 cut(s) 36
Csp6I GTAC 2 cut(s) 281, 417
CviAII CATG 1 cut(s) 402
CviQI GTAC 2 cut(s) 281, 417
DpnI GATC 8 cut(s) 131, 136, 168, 198, 217, 223, 313, 413
DpnII GATC 8 cut(s) 129, 134, 166, 196, 215, 221, 311, 411
EciI GGCGGA 1 cut(s) 335
Eco130I CCWWGG 1 cut(s) 235
Eco24I GRGCYC 1 cut(s) 340
Eco31I GGTCTC 1 cut(s) 41
Eco32I GATATC 1 cut(s) 118
Eco47I GGWCC 1 cut(s) 7
Eco88I CYCGRG 2 cut(s) 27, 200
EcoRV GATATC 1 cut(s) 118
EcoT14I CCWWGG 1 cut(s) 235
EcoT38I GRGCYC 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 235
FaeI CATG 1 cut(s) 405
FaiI YATR 5 cut(s) 210, 330, 403, 439, 444
FaqI GGGAC 2 cut(s) 104, 154
FatI CATG 1 cut(s) 401
FauI CCCGC 2 cut(s) 52, 98
Fnu4HI GCNGC 8 cut(s) 18, 55, 264, 286, 289, 292, 295, 298
FokI GGATG 2 cut(s) 98, 405
FriOI GRGCYC 1 cut(s) 340
Fsp4HI GCNGC 8 cut(s) 18, 55, 264, 286, 289, 292, 295, 298
FspBI CTAG 1 cut(s) 213
GlaI GCGC 1 cut(s) 58
GluI GCNGC 8 cut(s) 18, 55, 264, 286, 289, 292, 295, 298
HaeIII GGCC 2 cut(s) 377, 407
HapII CCGG 2 cut(s) 121, 201
HgaI GACGC 1 cut(s) 36
HhaI GCGC 1 cut(s) 59
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 1 cut(s) 405
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HinfI GANTC 2 cut(s) 25, 227
HpaII CCGG 2 cut(s) 121, 201
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 2 cut(s) 281, 361
Hpy188I TCNGA 6 cut(s) 11, 85, 129, 134, 226, 270
Hpy188III TCNNGA 2 cut(s) 29, 219
Hpy8I GTNNAC 2 cut(s) 281, 361
HpyCH4III ACNGT 1 cut(s) 145
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 2 cut(s) 381, 401
HpyF10VI GCNNNNNNNGC 8 cut(s) 60, 240, 260, 272, 291, 294, 297, 303
HpySE526I ACGT 1 cut(s) 419
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 1 cut(s) 405
HspAI GCGC 1 cut(s) 57
Kzo9I GATC 8 cut(s) 129, 134, 166, 196, 215, 221, 311, 411
LpnPI CCDG 7 cut(s) 79, 134, 214, 240, 391, 411, 435
Lsp1109I GCAGC 1 cut(s) 4
MaeI CTAG 1 cut(s) 213
MaeII ACGT 1 cut(s) 419
MalI GATC 8 cut(s) 131, 136, 168, 198, 217, 223, 313, 413
MboI GATC 8 cut(s) 129, 134, 166, 196, 215, 221, 311, 411
MboII GAAGA 1 cut(s) 34
MflI RGATCY 1 cut(s) 129
MhlI GDGCHC 2 cut(s) 175, 340
MlyI GAGTC 1 cut(s) 19
MmeI TCCRAC 2 cut(s) 63, 127
MnlI CCTC 4 cut(s) 72, 106, 152, 175
MspI CCGG 2 cut(s) 121, 201
MspR9I CCNGG 3 cut(s) 122, 201, 202
MvnI CGCG 2 cut(s) 59, 285
MwoI GCNNNNNNNGC 8 cut(s) 60, 240, 260, 272, 291, 294, 297, 303
NciI CCSGG 3 cut(s) 122, 201, 202
NdeII GATC 8 cut(s) 129, 134, 166, 196, 215, 221, 311, 411
NlaIII CATG 1 cut(s) 405
NlaIV GGNNCC 1 cut(s) 131
PaeR7I CTCGAG 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 8 cut(s) 19, 56, 265, 287, 290, 293, 296, 299
Ple19I CGATCG 1 cut(s) 137
PleI GAGTC 1 cut(s) 19
PpsI GAGTC 1 cut(s) 19
Ppu21I YACGTR 1 cut(s) 420
PspN4I GGNNCC 1 cut(s) 131
PspPI GGNCC 3 cut(s) 7, 375, 405
PsuI RGATCY 1 cut(s) 129
PvuI CGATCG 1 cut(s) 137
RsaI GTAC 2 cut(s) 282, 418
RsaNI GTAC 2 cut(s) 281, 417
SatI GCNGC 8 cut(s) 18, 55, 264, 286, 289, 292, 295, 298
Sau3AI GATC 8 cut(s) 129, 134, 166, 196, 215, 221, 311, 411
Sau96I GGNCC 3 cut(s) 7, 375, 405
SchI GAGTC 1 cut(s) 19
ScrFI CCNGG 3 cut(s) 122, 201, 202
SduI GDGCHC 2 cut(s) 175, 340
SetI ASST 3 cut(s) 83, 245, 422
Sfr274I CTCGAG 1 cut(s) 27
SinI GGWCC 1 cut(s) 7
SlaI CTCGAG 1 cut(s) 27
SmaI CCCGGG 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
SspMI CTAG 1 cut(s) 213
StyD4I CCNGG 3 cut(s) 120, 199, 200
StyI CCWWGG 1 cut(s) 235
TaaI ACNGT 1 cut(s) 145
TaiI ACGT 1 cut(s) 422
TaqI TCGA 4 cut(s) 28, 111, 169, 230
TauI GCSGC 7 cut(s) 57, 266, 288, 291, 294, 297, 300
TfiI GAWTC 1 cut(s) 227
TseI GCWGC 1 cut(s) 17
TspMI CCCGGG 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 7
XhoI CTCGAG 1 cut(s) 27
XmaI CCCGGG 1 cut(s) 200
XspI CTAG 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.