Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000981

Physical Location & Seq

Genomic Coordinates Forward (+)

56553402 .. 56554191

Gene Structure 790 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019776

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGACGCTCTCTCTTCTCTCGAGAGCTACTCTAAGGTCGCAACCGGCCTTGATTGGAGGCGGCGGCACTGCAAATTCCCTGACTCTTGGCAAAGAGGTTTCCCATCTACGTGGTGGCTATGAACCTTGGATTTGGAAAGGCGGCGACGACTCTCTTTCTCCTCCTCTCCTTGGTGGTGACGGTGATTGGCTTCAACGCCCCTTGAATTCATGCCTAGATCGGTCTTGTCTTCTTACTCGACCGAAGCCTCTGATGGTGGTCACCTTTGCTGTGATAGCACAAGATTCCTCATCCTTAACCTTGTTAGATGATGTGGGATGTGGACTCGGTGATGGTTGTGTTGCTCAGGTCGATTTAGGCTGGAATCTCAGTGGCGGTGACAAAGACTTTTACGGTGGTGATGGGAAAGATGGCGGCAGCAGTGGTGAAGGTGGTTCTGCTGAGGGGGGAGTCTGCTTGGTTGCTAGGGAGGCTAGAGGTTGCTTTTGGGATCCAAGATTTGGCCAAAAGAGTGGACTTTTGCTCATAGCTGGAGTCCTTGGGCTCGATTTTGGATGGTGGGCTCCCTGGGGGTTGCTTGGTGTGTTGTTGCCCTTTCGGAAAATATTTAAAATTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

207

Amino Acids

21.66

Weight (kDa)

5.13

Isoelectric Point (pI)

41.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000981)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0486651 RchiOBHm_Chr4g0407841 RchiOBHm_Chr6g0312071 RchiOBHm_Chr6g0312081 RchiOBHm_Chr7g0199951
rosa_laevigata	RLG00000000594 RLG00000001567 RLG00000001832 RLG00000004637 RLG00000004640 RLG00000004833 RLG00000006679 RLG00000007158 RLG00000008694 RLG00000009075 RLG00000011512 RLG00000012673 RLG00000015109 RLG00000016150 RLG00000017316 RLG00000019776 RLG00000020284 RLG00000020334 RLG00000021424 RLG00000021718 RLG00000022244 RLG00000023069 RLG00000023643 RLG00000025130 RLG00000027919 RLG00000028123 RLG00000029202 RLG00000030087 RLG00000035075 RLG00000035197 RLG00000035409 RLG00000035824
rosa_multiflora	Rmu_sc0002613.1_g000004 Rmu_ssc0000041.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019920 Rroxscaffold_2G00115510 Rroxscaffold_3G00246460 Rroxscaffold_3G00264120 Rroxscaffold_5G00344800 Rroxscaffold_6G00403360 Rroxscaffold_7G00204700
rosa_rugosa	Rorug02G0168200 Rorug05G0236500 Rorug05G0287700 Rorug05G0492800 Rorug06G0461500 Rorug06G0495600
rosa_samantha	Rh1CG201100 Rh1DG303400 Rh2BG472700 Rh3AG275800 Rh5BG139300 Rh5CG230200 Rh5DG114300 Rh6AG509200 Rh6BG248700 Rh6CG280300 Rh6DG402300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	500
AciI	CCGC	5 cut(s)	60, 63, 141, 375, 414
AclWI	GGATC	2 cut(s)	485, 498
AcoI	YGGCCR	1 cut(s)	502
AcsI	RAATTY	3 cut(s)	73, 205, 612
AfiI	CCNNNNNNNGG	2 cut(s)	170, 500
AgsI	TTSAA	2 cut(s)	194, 205
AjnI	CCWGG	1 cut(s)	566
AluBI	AGCT	2 cut(s)	26, 530
AluI	AGCT	2 cut(s)	26, 530
AlwI	GGATC	2 cut(s)	485, 498
Ama87I	CYCGRG	1 cut(s)	19
AoxI	GGCC	2 cut(s)	45, 502
ApeKI	GCWGC	1 cut(s)	417
ApoI	RAATTY	3 cut(s)	73, 205, 612
AsuHPI	GGTGA	7 cut(s)	188, 194, 253, 341, 389, 410, 437
AvaI	CYCGRG	1 cut(s)	19
BalI	TGGCCA	1 cut(s)	504
BamHI	GGATCC	1 cut(s)	490
BanII	GRGCYC	2 cut(s)	546, 565
BbsI	GAAGAC	1 cut(s)	221
BbvCI	CCTCAGC	1 cut(s)	441
BbvI	GCAGC	1 cut(s)	429
BccI	CCATC	6 cut(s)	111, 247, 326, 395, 404, 549
BciT130I	CCWGG	1 cut(s)	568
BfaI	CTAG	3 cut(s)	215, 465, 474
BisI	GCNGC	5 cut(s)	61, 64, 142, 415, 418
BlsI	GCNGC	5 cut(s)	62, 65, 143, 416, 419
Bme1390I	CCNGG	1 cut(s)	568
BmeT110I	CYCGRG	1 cut(s)	19
BmiI	GGNNCC	2 cut(s)	492, 564
BmrFI	CCNGG	1 cut(s)	568
BpiI	GAAGAC	1 cut(s)	221
BplI	GAGNNNNNCTC	2 cut(s)	13, 45
BpmI	CTGGAG	1 cut(s)	552
Bpu10I	CCTNAGC	2 cut(s)	345, 441
BsaAI	YACGTR	1 cut(s)	110
BsaJI	CCNNGG	5 cut(s)	125, 169, 538, 566, 567
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 500
Bse118I	RCCGGY	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	568
BseDI	CCNNGG	5 cut(s)	125, 169, 538, 566, 567
BseGI	GGATG	3 cut(s)	290, 323, 560
BseLI	CCNNNNNNNGG	2 cut(s)	170, 500
BseMII	CTCAG	3 cut(s)	359, 382, 432
BseRI	GAGGAG	2 cut(s)	150, 153
BseXI	GCAGC	1 cut(s)	429
Bsh1285I	CGRYCG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	47, 504
BsiEI	CGRYCG	1 cut(s)	242
BsiHKCI	CYCGRG	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	44
BslI	CCNNNNNNNGG	2 cut(s)	170, 500
BsnI	GGCC	2 cut(s)	47, 504
BsoBI	CYCGRG	1 cut(s)	19
Bsp1286I	GDGCHC	2 cut(s)	546, 565
Bsp143I	GATC	2 cut(s)	217, 490
BspACI	CCGC	5 cut(s)	60, 63, 141, 375, 414
BspANI	GGCC	2 cut(s)	47, 504
BspCNI	CTCAG	3 cut(s)	358, 381, 433
BspLI	GGNNCC	2 cut(s)	492, 564
BspPI	GGATC	2 cut(s)	485, 498
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	5 cut(s)	125, 169, 538, 566, 567
BssMI	GATC	2 cut(s)	217, 490
BssT1I	CCWWGG	3 cut(s)	125, 169, 538
Bst2UI	CCWGG	1 cut(s)	568
Bst4CI	ACNGT	2 cut(s)	182, 395
Bst6I	CTCTTC	1 cut(s)	18
BstBAI	YACGTR	1 cut(s)	110
BstDEI	CTNAG	4 cut(s)	32, 345, 368, 441
BstEII	GGTNACC	1 cut(s)	259
BstF5I	GGATG	3 cut(s)	290, 323, 560
BstKTI	GATC	2 cut(s)	220, 493
BstMBI	GATC	2 cut(s)	217, 490
BstMCI	CGRYCG	1 cut(s)	242
BstMWI	GCNNNNNNNGC	2 cut(s)	275, 470
BstNI	CCWGG	1 cut(s)	568
BstPI	GGTNACC	1 cut(s)	259
BstSCI	CCNGG	1 cut(s)	566
BstV1I	GCAGC	1 cut(s)	429
BstV2I	GAAGAC	1 cut(s)	221
BstX2I	RGATCY	1 cut(s)	490
BstXI	CCANNNNNNTGG	2 cut(s)	110, 512
BstYI	RGATCY	1 cut(s)	490
BsuRI	GGCC	2 cut(s)	47, 504
BtsCI	GGATG	3 cut(s)	290, 323, 560
BtsI	GCAGTG	2 cut(s)	66, 427
BtsIMutI	CAGTG	3 cut(s)	66, 376, 427
Cfr10I	RCCGGY	1 cut(s)	43
CseI	GACGC	1 cut(s)	13
CviAII	CATG	1 cut(s)	210
DdeI	CTNAG	4 cut(s)	32, 345, 368, 441
DpnI	GATC	2 cut(s)	219, 492
DpnII	GATC	2 cut(s)	217, 490
DraI	TTTAAA	1 cut(s)	610
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
Eco130I	CCWWGG	3 cut(s)	125, 169, 538
Eco24I	GRGCYC	2 cut(s)	546, 565
Eco88I	CYCGRG	1 cut(s)	19
Eco91I	GGTNACC	1 cut(s)	259
EcoO65I	GGTNACC	1 cut(s)	259
EcoRI	GAATTC	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	566
EcoT14I	CCWWGG	3 cut(s)	125, 169, 538
EcoT38I	GRGCYC	2 cut(s)	546, 565
ErhI	CCWWGG	3 cut(s)	125, 169, 538
FaeI	CATG	1 cut(s)	213
FaiI	YATR	3 cut(s)	120, 211, 527
FatI	CATG	1 cut(s)	209
Fnu4HI	GCNGC	5 cut(s)	61, 64, 142, 415, 418
FokI	GGATG	3 cut(s)	277, 330, 567
FriOI	GRGCYC	2 cut(s)	546, 565
Fsp4HI	GCNGC	5 cut(s)	61, 64, 142, 415, 418
FspBI	CTAG	3 cut(s)	215, 465, 474
GluI	GCNGC	5 cut(s)	61, 64, 142, 415, 418
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	2 cut(s)	47, 504
HapII	CCGG	1 cut(s)	44
HgaI	GACGC	1 cut(s)	13
Hin1II	CATG	1 cut(s)	213
HinfI	GANTC	7 cut(s)	82, 149, 284, 324, 364, 450, 534
HpaII	CCGG	1 cut(s)	44
HphI	GGTGA	7 cut(s)	188, 194, 253, 341, 389, 410, 437
Hpy166II	GTNNAC	2 cut(s)	323, 515
Hpy188I	TCNGA	2 cut(s)	252, 600
Hpy188III	TCNNGA	2 cut(s)	19, 21
Hpy8I	GTNNAC	2 cut(s)	323, 515
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	422
HpyCH4III	ACNGT	2 cut(s)	182, 395
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	2 cut(s)	275, 470
HpyF3I	CTNAG	4 cut(s)	32, 345, 368, 441
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	1 cut(s)	213
Kzo9I	GATC	2 cut(s)	217, 490
LmnI	GCTCC	1 cut(s)	568
LpnPI	CCDG	7 cut(s)	57, 92, 332, 346, 516, 553, 580
Lsp1109I	GCAGC	1 cut(s)	429
MaeI	CTAG	3 cut(s)	215, 465, 474
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	3 cut(s)	176, 259, 377
MalI	GATC	2 cut(s)	219, 492
MboI	GATC	2 cut(s)	217, 490
MboII	GAAGA	2 cut(s)	5, 221
MflI	RGATCY	1 cut(s)	490
MhlI	GDGCHC	2 cut(s)	546, 565
MlsI	TGGCCA	1 cut(s)	504
MluCI	AATT	3 cut(s)	73, 205, 612
MluNI	TGGCCA	1 cut(s)	504
MlyI	GAGTC	5 cut(s)	76, 143, 318, 459, 543
MnlI	CCTC	9 cut(s)	50, 88, 171, 174, 258, 298, 436, 463, 470
Mox20I	TGGCCA	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	504
MseI	TTAA	2 cut(s)	296, 609
MslI	CAYNNNNRTG	1 cut(s)	108
Msp20I	TGGCCA	1 cut(s)	504
MspI	CCGG	1 cut(s)	44
MspR9I	CCNGG	1 cut(s)	568
MvaI	CCWGG	1 cut(s)	568
MwoI	GCNNNNNNNGC	2 cut(s)	275, 470
NdeII	GATC	2 cut(s)	217, 490
NlaIII	CATG	1 cut(s)	213
NlaIV	GGNNCC	2 cut(s)	492, 564
NmuCI	GTSAC	3 cut(s)	176, 259, 377
PaeR7I	CTCGAG	1 cut(s)	19
PasI	CCCWGGG	1 cut(s)	567
PfeI	GAWTC	2 cut(s)	284, 364
PflMI	CCANNNNNTGG	1 cut(s)	500
PkrI	GCNGC	5 cut(s)	62, 65, 143, 416, 419
PleI	GAGTC	5 cut(s)	76, 143, 318, 458, 542
PpsI	GAGTC	5 cut(s)	76, 143, 318, 458, 542
Ppu21I	YACGTR	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	566
PspEI	GGTNACC	1 cut(s)	259
PspGI	CCWGG	1 cut(s)	566
PspN4I	GGNNCC	2 cut(s)	492, 564
PsuI	RGATCY	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	296, 609
SatI	GCNGC	5 cut(s)	61, 64, 142, 415, 418
Sau3AI	GATC	2 cut(s)	217, 490
SchI	GAGTC	5 cut(s)	76, 143, 318, 459, 543
ScrFI	CCNGG	1 cut(s)	568
SduI	GDGCHC	2 cut(s)	546, 565
Sfr274I	CTCGAG	1 cut(s)	19
SlaI	CTCGAG	1 cut(s)	19
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
Sse9I	AATT	3 cut(s)	73, 205, 612
SsiI	CCGC	5 cut(s)	60, 63, 141, 375, 414
SspI	AATATT	1 cut(s)	606
SspMI	CTAG	3 cut(s)	215, 465, 474
StyD4I	CCNGG	1 cut(s)	566
StyI	CCWWGG	3 cut(s)	125, 169, 538
TaaI	ACNGT	2 cut(s)	182, 395
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	4 cut(s)	20, 238, 351, 546
TaqII	GACCGA	2 cut(s)	210, 256
TasI	AATT	3 cut(s)	73, 205, 612
TauI	GCSGC	4 cut(s)	63, 66, 144, 417
TfiI	GAWTC	2 cut(s)	284, 364
Tru1I	TTAA	2 cut(s)	296, 609
Tru9I	TTAA	2 cut(s)	296, 609
TscAI	CASTG	3 cut(s)	73, 376, 427
TseFI	GTSAC	3 cut(s)	176, 259, 377
TseI	GCWGC	1 cut(s)	417
Tsp45I	GTSAC	3 cut(s)	176, 259, 377
TspDTI	ATGAA	2 cut(s)	135, 198
TspRI	CASTG	3 cut(s)	73, 376, 427
Van91I	CCANNNNNTGG	1 cut(s)	500
XapI	RAATTY	3 cut(s)	73, 205, 612
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110
XhoI	CTCGAG	1 cut(s)	19
XspI	CTAG	3 cut(s)	215, 465, 474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.