RLG00000020284

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000981
Physical Location & Seq
Reverse (-)
63235141 .. 63236884
1744 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020284

Sequence Viewer

Length: 480 bp
ATGCTCTCTCTTTCTCTAGAGAGAAAAAACCTAAGTCCGCAACCTGCCTTGATTGGAGGTAGCGGTATTGCAAATCTATTGACTCTCAGTAGAGAGGTTTTCCGGCTACGCAGTGGCTCGGTTACTTGGGGCTGGAAGGGTGGCGGCTCGCCTCTTTCTTCTCTTCTACTTGGCGGCGACGGCGAATGGTTTCGTCAGTGCCCCATGATGGCGCCACATCACCTTCGCAAGTCCGGTAGCGTCACCAAGCAGATCCGACAGGGCACCAATGCAAAGATTCGAATCGAGGAGTCGCCTCAACTCGACTCGCTGGACCACGTCATCGTCGTCATCAACTCCCAGTCGGTGACGGTGGGCTTGGTTGGGCAACAGAGGCAAGATAACGGTGGGTTTGCTCCGATTCTGAATTTCACTAGTGAATTTGTTTCCGGCGAGTATCAATCTGTGGAATTGCTTACAGTTTTTCAGACCTTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.29

Weight (kDa)

8.98

Isoelectric Point (pI)

51.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 52
AccB1I GGYRCC 2 cut(s) 211, 263
AciI CCGC 4 cut(s) 38, 63, 144, 174
AclWI GGATC 1 cut(s) 247
AcsI RAATTY 2 cut(s) 406, 419
AcyI GRCGYC 1 cut(s) 212
AfiI CCNNNNNNNGG 1 cut(s) 208
AhlI ACTAGT 1 cut(s) 413
AjiI CACGTC 1 cut(s) 319
AlwI GGATC 1 cut(s) 247
ApoI RAATTY 2 cut(s) 406, 419
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 214
AspS9I GGNCC 1 cut(s) 313
AsuHPI GGTGA 3 cut(s) 212, 235, 358
AsuII TTCGAA 1 cut(s) 280
AvaII GGWCC 1 cut(s) 313
BaeGI GKGCMC 2 cut(s) 203, 266
BanI GGYRCC 2 cut(s) 211, 263
BccI CCATC 1 cut(s) 202
BceAI ACGGC 1 cut(s) 196
BcuI ACTAGT 1 cut(s) 413
BfaI CTAG 2 cut(s) 17, 414
BfoI RGCGCY 1 cut(s) 215
BfuAI ACCTGC 1 cut(s) 52
BisI GCNGC 2 cut(s) 145, 175
BlsI GCNGC 2 cut(s) 146, 176
Bme18I GGWCC 1 cut(s) 313
BmgBI CACGTC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 313
BmiI GGNNCC 2 cut(s) 213, 265
BmrI ACTGGG 1 cut(s) 334
BmuI ACTGGG 1 cut(s) 334
BoxI GACNNNNGTC 1 cut(s) 473
Bpu14I TTCGAA 1 cut(s) 280
BsaBI GATNNNNATC 1 cut(s) 281
BsaHI GRCGYC 1 cut(s) 212
BsaWI WCCGGW 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse1I ACTGG 1 cut(s) 340
Bse8I GATNNNNATC 1 cut(s) 281
BseJI GATNNNNATC 1 cut(s) 281
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 100
BseNI ACTGG 1 cut(s) 340
BseRI GAGGAG 1 cut(s) 302
BseSI GKGCMC 2 cut(s) 203, 266
BshNI GGYRCC 2 cut(s) 211, 263
BsiSI CCGG 3 cut(s) 103, 234, 429
BslI CCNNNNNNNGG 1 cut(s) 208
Bsp119I TTCGAA 1 cut(s) 280
Bsp1286I GDGCHC 2 cut(s) 203, 266
Bsp143I GATC 1 cut(s) 252
BspACI CCGC 4 cut(s) 38, 63, 144, 174
BspCNI CTCAG 1 cut(s) 99
BspLI GGNNCC 2 cut(s) 213, 265
BspMI ACCTGC 1 cut(s) 52
BspPI GGATC 1 cut(s) 247
BspT104I TTCGAA 1 cut(s) 280
BspT107I GGYRCC 2 cut(s) 211, 263
BsrI ACTGG 1 cut(s) 340
BssMI GATC 1 cut(s) 252
BssNI GRCGYC 1 cut(s) 212
Bst4CI ACNGT 3 cut(s) 352, 386, 460
Bst6I CTCTTC 1 cut(s) 168
BstACI GRCGYC 1 cut(s) 212
BstBI TTCGAA 1 cut(s) 280
BstC8I GCNNGC 1 cut(s) 149
BstDEI CTNAG 2 cut(s) 32, 86
BstH2I RGCGCY 1 cut(s) 215
BstHHI GCGC 1 cut(s) 214
BstKTI GATC 1 cut(s) 255
BstMBI GATC 1 cut(s) 252
BstMWI GCNNNNNNNGC 2 cut(s) 180, 373
BstPAI GACNNNNGTC 1 cut(s) 473
BstSLI GKGCMC 2 cut(s) 203, 266
BstX2I RGATCY 1 cut(s) 252
BstYI RGATCY 1 cut(s) 252
BtrI CACGTC 1 cut(s) 319
BtsI GCAGTG 1 cut(s) 118
BtsIMutI CAGTG 2 cut(s) 118, 203
BveI ACCTGC 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 149
CfoI GCGC 1 cut(s) 214
Cfr13I GGNCC 1 cut(s) 313
CseI GACGC 1 cut(s) 229
CviAII CATG 1 cut(s) 205
CviJI RGCY 5 cut(s) 106, 117, 132, 147, 357
CviKI_1 RGCY 5 cut(s) 106, 117, 132, 147, 357
DdeI CTNAG 2 cut(s) 32, 86
DinI GGCGCC 1 cut(s) 213
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 168
EarI CTCTTC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 313
EgeI GGCGCC 1 cut(s) 213
EheI GGCGCC 1 cut(s) 213
FaeI CATG 1 cut(s) 208
FaiI YATR 1 cut(s) 206
FatI CATG 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 145, 175
Fsp4HI GCNGC 2 cut(s) 145, 175
FspBI CTAG 2 cut(s) 17, 414
GlaI GCGC 1 cut(s) 213
GluI GCNGC 2 cut(s) 145, 175
HaeII RGCGCY 1 cut(s) 215
HapII CCGG 3 cut(s) 103, 234, 429
HgaI GACGC 1 cut(s) 229
HhaI GCGC 1 cut(s) 214
Hin1I GRCGYC 1 cut(s) 212
Hin1II CATG 1 cut(s) 208
Hin6I GCGC 1 cut(s) 212
HinP1I GCGC 1 cut(s) 212
HinfI GANTC 6 cut(s) 82, 277, 282, 290, 305, 400
HpaII CCGG 3 cut(s) 103, 234, 429
HphI GGTGA 3 cut(s) 212, 235, 358
Hpy188I TCNGA 4 cut(s) 257, 399, 405, 468
Hpy188III TCNNGA 1 cut(s) 17
Hpy99I CGWCG 2 cut(s) 182, 329
HpyAV CCTTC 2 cut(s) 130, 233
HpyCH4III ACNGT 3 cut(s) 352, 386, 460
HpyCH4IV ACGT 1 cut(s) 318
HpyCH4V TGCA 2 cut(s) 71, 272
HpyF10VI GCNNNNNNNGC 2 cut(s) 180, 373
HpyF3I CTNAG 2 cut(s) 32, 86
HpySE526I ACGT 1 cut(s) 318
Hsp92I GRCGYC 1 cut(s) 212
Hsp92II CATG 1 cut(s) 208
HspAI GCGC 1 cut(s) 212
KasI GGCGCC 1 cut(s) 211
Kzo9I GATC 1 cut(s) 252
LmnI GCTCC 1 cut(s) 400
LpnPI CCDG 8 cut(s) 57, 116, 118, 245, 247, 296, 353, 442
MaeI CTAG 2 cut(s) 17, 414
MaeII ACGT 1 cut(s) 318
MaeIII GTNAC 3 cut(s) 121, 241, 346
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 2 cut(s) 150, 155
MflI RGATCY 1 cut(s) 252
MhlI GDGCHC 2 cut(s) 203, 266
MluCI AATT 3 cut(s) 406, 419, 449
Mly113I GGCGCC 1 cut(s) 212
MlyI GAGTC 3 cut(s) 76, 299, 299
MmeI TCCRAC 1 cut(s) 280
MnlI CCTC 6 cut(s) 50, 88, 162, 280, 306, 366
MroXI GAANNNNTTC 1 cut(s) 189
MspI CCGG 3 cut(s) 103, 234, 429
MwoI GCNNNNNNNGC 2 cut(s) 180, 373
NarI GGCGCC 1 cut(s) 212
NdeII GATC 1 cut(s) 252
NlaIII CATG 1 cut(s) 208
NlaIV GGNNCC 2 cut(s) 213, 265
NmuCI GTSAC 2 cut(s) 241, 346
NspV TTCGAA 1 cut(s) 280
PcsI WCGNNNNNNNCGW 1 cut(s) 324
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 3 cut(s) 277, 282, 400
PflFI GACNNNGTC 1 cut(s) 317
PkrI GCNGC 2 cut(s) 146, 176
PleI GAGTC 3 cut(s) 76, 298, 299
PluTI GGCGCC 1 cut(s) 215
PpsI GAGTC 3 cut(s) 76, 298, 299
PshAI GACNNNNGTC 1 cut(s) 473
PspN4I GGNNCC 2 cut(s) 213, 265
PspPI GGNCC 1 cut(s) 313
PsuI RGATCY 1 cut(s) 252
PsyI GACNNNGTC 1 cut(s) 317
SatI GCNGC 2 cut(s) 145, 175
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 1 cut(s) 313
SchI GAGTC 3 cut(s) 76, 299, 299
SduI GDGCHC 2 cut(s) 203, 266
SetI ASST 7 cut(s) 33, 46, 61, 99, 225, 321, 473
SfoI GGCGCC 1 cut(s) 213
SfuI TTCGAA 1 cut(s) 280
SinI GGWCC 1 cut(s) 313
SpeI ACTAGT 1 cut(s) 413
Sse9I AATT 3 cut(s) 406, 419, 449
SsiI CCGC 4 cut(s) 38, 63, 144, 174
SspDI GGCGCC 1 cut(s) 211
SspMI CTAG 2 cut(s) 17, 414
TaaI ACNGT 3 cut(s) 352, 386, 460
TaiI ACGT 1 cut(s) 321
TaqI TCGA 3 cut(s) 280, 285, 303
TasI AATT 3 cut(s) 406, 419, 449
TauI GCSGC 2 cut(s) 147, 177
TfiI GAWTC 3 cut(s) 277, 282, 400
TscAI CASTG 2 cut(s) 118, 203
TseFI GTSAC 2 cut(s) 241, 346
Tsp45I GTSAC 2 cut(s) 241, 346
TspRI CASTG 2 cut(s) 118, 203
Tth111I GACNNNGTC 1 cut(s) 317
VpaK11BI GGWCC 1 cut(s) 313
XapI RAATTY 2 cut(s) 406, 419
XbaI TCTAGA 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 2 cut(s) 17, 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.