RLG00000021718

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000981
Physical Location & Seq
Reverse (-)
77495599 .. 77497240
1642 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021718

Sequence Viewer

Length: 630 bp
ATGAGCCTATTCAATAGAAATATACTACTGCTCTCTCTTTCTCTAGAGAGAAAAAACCTAAGGCCGCAACCTGCCTTGATTGGAGGCGGCGGTACTGCAAATCTAATGACTCTCGGCAGAGAGGTTTTCCGGCTACGCAGTGGCTCGGTTACTTGGGGCTGGAAGGGTGGCGGCTTGCCTCTTTCTTCGCTTCTACTTGGCGGCGACGGCGAATGGTTTCGTCAGTGCCCCATGATGGCGGTCCGATTGGCCGCGAAGACTCGAAATTTTCTCTCGTCGGTGTCAAGCGGAGCTGGGCCTTTCACTCTGGGCGAGGTCGGATGGGAACTGGTTGATGGCTGGGGTCGAGGACATCTGGGTTCAGATCCGATCGAGGACATTTTGGAAGTGATGGATGGCTGTGATCGAGCAATCTCTGAGGGTGTGGTGAGTGATCCCGGGGGCTATGCTAGATTGGGATCAGGTTCAAGCCGAGGAACTGCTGTGGACACGATTGTGTTCAGTAGATTTTGTGAGGAGGACGGGGCTGCTGAAGCGACGGCTTTGACGGCGAATAGGGGGTTCAATAATGTAGGGGGGTGGAGTAGTACTGCTATTCCCTTCTTAAATGATGAGTCTACTGCACACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

210

Amino Acids

22.06

Weight (kDa)

5.24

Isoelectric Point (pI)

39.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 79
AccI GTMKAC 1 cut(s) 617
AccII CGCG 1 cut(s) 254
AciI CCGC 8 cut(s) 65, 87, 90, 171, 201, 239, 252, 288
AclWI GGATC 3 cut(s) 359, 428, 466
AcoI YGGCCR 1 cut(s) 249
AcsI RAATTY 1 cut(s) 265
AcuI CTGAAG 1 cut(s) 552
AfaI GTAC 2 cut(s) 94, 589
AfiI CCNNNNNNNGG 1 cut(s) 235
AgsI TTSAA 3 cut(s) 13, 468, 565
AleI CACNNNNGTG 1 cut(s) 494
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
AlwI GGATC 3 cut(s) 359, 428, 466
Ama87I CYCGRG 1 cut(s) 437
AoxI GGCC 3 cut(s) 62, 249, 296
ApeKI GCWGC 1 cut(s) 527
ApoI RAATTY 1 cut(s) 265
Asp700I GAANNNNTTC 1 cut(s) 216
AspS9I GGNCC 2 cut(s) 241, 296
AsuC2I CCSGG 2 cut(s) 438, 439
AsuHPI GGTGA 1 cut(s) 439
AvaI CYCGRG 1 cut(s) 437
AvaII GGWCC 1 cut(s) 241
AxyI CCTNAGG 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 263
BbvI GCAGC 1 cut(s) 514
BccI CCATC 5 cut(s) 229, 315, 329, 385, 389
BceAI ACGGC 3 cut(s) 223, 555, 564
BcnI CCSGG 2 cut(s) 438, 439
BfaI CTAG 2 cut(s) 44, 450
BfuAI ACCTGC 1 cut(s) 79
BisI GCNGC 6 cut(s) 65, 88, 172, 202, 252, 528
BlsI GCNGC 6 cut(s) 66, 89, 173, 203, 253, 529
BmcAI AGTACT 1 cut(s) 589
Bme1390I CCNGG 2 cut(s) 438, 439
Bme18I GGWCC 1 cut(s) 241
BmeT110I CYCGRG 1 cut(s) 437
BmgT120I GGNCC 2 cut(s) 241, 296
BmrFI CCNGG 2 cut(s) 438, 439
BpiI GAAGAC 1 cut(s) 263
BpuMI CCSGG 2 cut(s) 438, 439
BsaBI GATNNNNATC 1 cut(s) 457
BsaJI CCNNGG 3 cut(s) 437, 438, 472
Bsc4I CCNNNNNNNGG 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 333
Bse21I CCTNAGG 1 cut(s) 59
Bse8I GATNNNNATC 1 cut(s) 457
BseDI CCNNGG 3 cut(s) 437, 438, 472
BseGI GGATG 2 cut(s) 326, 400
BseJI GATNNNNATC 1 cut(s) 457
BseLI CCNNNNNNNGG 1 cut(s) 235
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 1 cut(s) 333
BseRI GAGGAG 1 cut(s) 530
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 1 cut(s) 514
BseYI CCCAGC 2 cut(s) 293, 339
BsgI GTGCAG 1 cut(s) 606
Bsh1236I CGCG 1 cut(s) 254
Bsh1285I CGRYCG 1 cut(s) 372
BshFI GGCC 3 cut(s) 64, 251, 298
BsiEI CGRYCG 1 cut(s) 372
BsiHKCI CYCGRG 1 cut(s) 437
BsiSI CCGG 2 cut(s) 130, 438
BslI CCNNNNNNNGG 1 cut(s) 235
BsnI GGCC 3 cut(s) 64, 251, 298
BsoBI CYCGRG 1 cut(s) 437
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 5 cut(s) 364, 369, 403, 433, 458
BspACI CCGC 8 cut(s) 65, 87, 90, 171, 201, 239, 252, 288
BspANI GGCC 3 cut(s) 64, 251, 298
BspCNI CTCAG 1 cut(s) 409
BspFNI CGCG 1 cut(s) 254
BspMI ACCTGC 1 cut(s) 79
BspPI GGATC 3 cut(s) 359, 428, 466
BsrI ACTGG 1 cut(s) 333
BssECI CCNNGG 3 cut(s) 437, 438, 472
BssMI GATC 5 cut(s) 364, 369, 403, 433, 458
BstC8I GCNNGC 1 cut(s) 176
BstDEI CTNAG 2 cut(s) 59, 417
BstF5I GGATG 2 cut(s) 326, 400
BstFNI CGCG 1 cut(s) 254
BstKTI GATC 5 cut(s) 367, 372, 406, 436, 461
BstMBI GATC 5 cut(s) 364, 369, 403, 433, 458
BstMCI CGRYCG 1 cut(s) 372
BstMWI GCNNNNNNNGC 3 cut(s) 207, 533, 548
BstSCI CCNGG 2 cut(s) 436, 437
BstSLI GKGCMC 1 cut(s) 230
BstUI CGCG 1 cut(s) 254
BstV1I GCAGC 1 cut(s) 514
BstV2I GAAGAC 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 364
BstYI RGATCY 1 cut(s) 364
Bsu36I CCTNAGG 1 cut(s) 59
BsuRI GGCC 3 cut(s) 64, 251, 298
BtsCI GGATG 2 cut(s) 326, 400
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 3 cut(s) 145, 230, 625
BveI ACCTGC 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 176
Cfr13I GGNCC 2 cut(s) 241, 296
Cfr9I CCCGGG 1 cut(s) 437
CpoI CGGWCCG 1 cut(s) 241
Csp6I GTAC 2 cut(s) 93, 588
CspI CGGWCCG 1 cut(s) 241
CviAII CATG 1 cut(s) 232
CviQI GTAC 2 cut(s) 93, 588
DdeI CTNAG 2 cut(s) 59, 417
DpnI GATC 5 cut(s) 366, 371, 405, 435, 460
DpnII GATC 5 cut(s) 364, 369, 403, 433, 458
EaeI YGGCCR 1 cut(s) 249
Eco47I GGWCC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 552
Eco81I CCTNAGG 1 cut(s) 59
Eco88I CYCGRG 1 cut(s) 437
FaeI CATG 1 cut(s) 235
FaiI YATR 3 cut(s) 23, 233, 447
FatI CATG 1 cut(s) 231
FblI GTMKAC 1 cut(s) 617
Fnu4HI GCNGC 6 cut(s) 65, 88, 172, 202, 252, 528
FokI GGATG 2 cut(s) 333, 407
Fsp4HI GCNGC 6 cut(s) 65, 88, 172, 202, 252, 528
FspBI CTAG 2 cut(s) 44, 450
GluI GCNGC 6 cut(s) 65, 88, 172, 202, 252, 528
GsaI CCCAGC 2 cut(s) 297, 343
HaeIII GGCC 3 cut(s) 64, 251, 298
HapII CCGG 2 cut(s) 130, 438
Hin1II CATG 1 cut(s) 235
HinfI GANTC 3 cut(s) 109, 259, 614
HpaII CCGG 2 cut(s) 130, 438
HphI GGTGA 1 cut(s) 439
Hpy166II GTNNAC 2 cut(s) 487, 618
Hpy188I TCNGA 5 cut(s) 245, 320, 364, 369, 418
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 2 cut(s) 487, 618
Hpy99I CGWCG 3 cut(s) 209, 280, 541
HpyAV CCTTC 2 cut(s) 157, 610
HpyCH4V TGCA 2 cut(s) 98, 623
HpyF10VI GCNNNNNNNGC 3 cut(s) 207, 533, 548
HpyF3I CTNAG 2 cut(s) 59, 417
Hsp92II CATG 1 cut(s) 235
Kzo9I GATC 5 cut(s) 364, 369, 403, 433, 458
LmnI GCTCC 1 cut(s) 290
Lsp1109I GCAGC 1 cut(s) 514
MaeI CTAG 2 cut(s) 44, 450
MaeIII GTNAC 1 cut(s) 148
MalI GATC 5 cut(s) 366, 371, 405, 435, 460
MboI GATC 5 cut(s) 364, 369, 403, 433, 458
MboII GAAGA 2 cut(s) 177, 268
MflI RGATCY 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 230
MluCI AATT 1 cut(s) 265
MlyI GAGTC 3 cut(s) 103, 253, 623
MmeI TCCRAC 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 216
MseI TTAA 1 cut(s) 605
MslI CAYNNNNRTG 1 cut(s) 494
MspI CCGG 2 cut(s) 130, 438
MspR9I CCNGG 2 cut(s) 438, 439
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 3 cut(s) 207, 533, 548
NciI CCSGG 2 cut(s) 438, 439
NdeII GATC 5 cut(s) 364, 369, 403, 433, 458
NlaIII CATG 1 cut(s) 235
NmeAIII GCCGAG 2 cut(s) 93, 497
OliI CACNNNNGTG 1 cut(s) 494
PdmI GAANNNNTTC 1 cut(s) 216
PkrI GCNGC 6 cut(s) 66, 89, 173, 203, 253, 529
Ple19I CGATCG 1 cut(s) 372
PleI GAGTC 3 cut(s) 103, 253, 622
PpsI GAGTC 3 cut(s) 103, 253, 622
PspFI CCCAGC 2 cut(s) 293, 339
PspPI GGNCC 2 cut(s) 241, 296
PsuI RGATCY 1 cut(s) 364
PvuI CGATCG 1 cut(s) 372
RsaI GTAC 2 cut(s) 94, 589
RsaNI GTAC 2 cut(s) 93, 588
RseI CAYNNNNRTG 1 cut(s) 494
Rsr2I CGGWCCG 1 cut(s) 241
RsrII CGGWCCG 1 cut(s) 241
SaqAI TTAA 1 cut(s) 605
SatI GCNGC 6 cut(s) 65, 88, 172, 202, 252, 528
Sau3AI GATC 5 cut(s) 364, 369, 403, 433, 458
Sau96I GGNCC 2 cut(s) 241, 296
ScaI AGTACT 1 cut(s) 589
SchI GAGTC 3 cut(s) 103, 253, 623
ScrFI CCNGG 2 cut(s) 438, 439
SduI GDGCHC 1 cut(s) 230
SetI ASST 6 cut(s) 60, 73, 126, 295, 318, 466
SinI GGWCC 1 cut(s) 241
SmaI CCCGGG 1 cut(s) 439
SmiMI CAYNNNNRTG 1 cut(s) 494
Sse9I AATT 1 cut(s) 265
SsiI CCGC 8 cut(s) 65, 87, 90, 171, 201, 239, 252, 288
SspMI CTAG 2 cut(s) 44, 450
StyD4I CCNGG 2 cut(s) 436, 437
TaqI TCGA 4 cut(s) 262, 346, 372, 406
TasI AATT 1 cut(s) 265
TatI WGTACW 1 cut(s) 587
TauI GCSGC 5 cut(s) 67, 90, 174, 204, 254
Tru1I TTAA 1 cut(s) 605
Tru9I TTAA 1 cut(s) 605
TscAI CASTG 2 cut(s) 145, 230
TseI GCWGC 1 cut(s) 527
TspMI CCCGGG 1 cut(s) 437
TspRI CASTG 2 cut(s) 145, 230
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 1 cut(s) 265
XbaI TCTAGA 1 cut(s) 43
XmaI CCCGGG 1 cut(s) 437
XmiI GTMKAC 1 cut(s) 617
XmnI GAANNNNTTC 1 cut(s) 216
XspI CTAG 2 cut(s) 44, 450
ZrmI AGTACT 1 cut(s) 589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.