Rroxscaffold_5G00344800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000981
Physical Location & Seq
Forward (+)
14927365 .. 14930054
2690 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00344800.1

Sequence Viewer

Length: 465 bp
ATGCCCTCCTCCACCCCACCGTCCTCTTCCACCGTCGAAGCTTTCTCGTGGATAACTCGATTGCTTGTTCCTTCCTTCCTTTACTTGGGTGATTGTCTAGGTGATGTGGGACGGGGACTCAGTGATGGCTGGGTTGTTCAGGCCGGAGTGGGATCAGATCCGATCAGATGGGTTTGGTCGATTTGTATGGTGGCCGAGGAGAACGTGATCGGTGGCGAACTAGTTTCCCCTTCGGTGGCAAAGATTGCAACTGGGCTGCAATTACACTGTGCCGGTGGTGATGGTGATCTTTCTCATCTGTTGGATTGCGGCGGCGATGGGAAAGGCTATGGCGGCAGTGGTGAGGGAGGTCCTGCTAAGGGCGGCGGCTCTTGGGTCTCTAGGTATGCCAGGGTTTGCTACTGGGCTCTTAGACTGTTGGGCCTGGAGTGGATCTTTGCCTATGGTTGGGGCTTTTGGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

16.17

Weight (kDa)

4.8

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 309, 312, 333, 363, 366
AclWI GGATC 3 cut(s) 152, 160, 440
AcoI YGGCCR 1 cut(s) 192
AfiI CCNNNNNNNGG 4 cut(s) 85, 235, 359, 447
AhlI ACTAGT 1 cut(s) 220
AjnI CCWGG 2 cut(s) 389, 423
AluBI AGCT 1 cut(s) 41
AluI AGCT 1 cut(s) 41
Alw26I GTCTC 1 cut(s) 382
AlwI GGATC 3 cut(s) 152, 160, 440
AoxI GGCC 3 cut(s) 141, 192, 421
ApeKI GCWGC 1 cut(s) 256
AspS9I GGNCC 2 cut(s) 350, 421
AsuHPI GGTGA 5 cut(s) 101, 113, 290, 296, 353
AvaII GGWCC 1 cut(s) 350
BanII GRGCYC 1 cut(s) 409
BauI CACGAG 1 cut(s) 46
BbvI GCAGC 1 cut(s) 243
BccI CCATC 4 cut(s) 119, 162, 275, 311
BciT130I CCWGG 2 cut(s) 391, 425
BcoDI GTCTC 1 cut(s) 382
BcuI ACTAGT 1 cut(s) 220
BfaI CTAG 3 cut(s) 98, 221, 381
BisI GCNGC 6 cut(s) 257, 310, 313, 334, 364, 367
BlsI GCNGC 6 cut(s) 258, 311, 314, 335, 365, 368
Bme1390I CCNGG 2 cut(s) 391, 425
Bme18I GGWCC 1 cut(s) 350
BmgT120I GGNCC 2 cut(s) 350, 421
BmrFI CCNGG 2 cut(s) 391, 425
BmrI ACTGGG 2 cut(s) 261, 412
BmuI ACTGGG 2 cut(s) 261, 412
BpmI CTGGAG 1 cut(s) 446
Bpu10I CCTNAGC 1 cut(s) 357
BsaBI GATNNNNATC 1 cut(s) 285
BsaI GGTCTC 1 cut(s) 382
BsaJI CCNNGG 2 cut(s) 195, 390
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 235, 359, 447
Bse118I RCCGGY 1 cut(s) 272
Bse1I ACTGG 2 cut(s) 256, 407
Bse8I GATNNNNATC 1 cut(s) 285
BseBI CCWGG 2 cut(s) 391, 425
BseDI CCNNGG 2 cut(s) 195, 390
BseJI GATNNNNATC 1 cut(s) 285
BseLI CCNNNNNNNGG 4 cut(s) 85, 235, 359, 447
BseMII CTCAG 1 cut(s) 133
BseNI ACTGG 2 cut(s) 256, 407
BseRI GAGGAG 1 cut(s) 212
BseXI GCAGC 1 cut(s) 243
BseYI CCCAGC 1 cut(s) 129
BshFI GGCC 3 cut(s) 143, 194, 423
BsiSI CCGG 2 cut(s) 144, 273
BslFI GGGAC 2 cut(s) 123, 129
BslI CCNNNNNNNGG 4 cut(s) 85, 235, 359, 447
BsmAI GTCTC 1 cut(s) 382
BsmFI GGGAC 2 cut(s) 123, 129
BsnI GGCC 3 cut(s) 143, 194, 423
Bso31I GGTCTC 1 cut(s) 382
Bsp1286I GDGCHC 1 cut(s) 409
Bsp143I GATC 6 cut(s) 152, 157, 162, 207, 286, 432
BspACI CCGC 5 cut(s) 309, 312, 333, 363, 366
BspANI GGCC 3 cut(s) 143, 194, 423
BspCNI CTCAG 1 cut(s) 132
BspPI GGATC 3 cut(s) 152, 160, 440
BspTNI GGTCTC 1 cut(s) 382
BsrFI RCCGGY 1 cut(s) 272
BsrI ACTGG 2 cut(s) 256, 407
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 2 cut(s) 195, 390
BssMI GATC 6 cut(s) 152, 157, 162, 207, 286, 432
BssSI CACGAG 1 cut(s) 46
Bst2BI CACGAG 1 cut(s) 46
Bst2UI CCWGG 2 cut(s) 391, 425
Bst4CI ACNGT 4 cut(s) 21, 34, 269, 417
Bst6I CTCTTC 1 cut(s) 31
BstAPI GCANNNNNTGC 1 cut(s) 245
BstDEI CTNAG 3 cut(s) 119, 357, 410
BstKTI GATC 6 cut(s) 155, 160, 165, 210, 289, 435
BstMAI GTCTC 1 cut(s) 382
BstMBI GATC 6 cut(s) 152, 157, 162, 207, 286, 432
BstMWI GCNNNNNNNGC 2 cut(s) 245, 333
BstNI CCWGG 2 cut(s) 391, 425
BstSCI CCNGG 2 cut(s) 389, 423
BstV1I GCAGC 1 cut(s) 243
BstX2I RGATCY 2 cut(s) 157, 432
BstYI RGATCY 2 cut(s) 157, 432
BsuRI GGCC 3 cut(s) 143, 194, 423
BtgZI GCGATG 1 cut(s) 330
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 3 cut(s) 127, 265, 343
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 350, 421
DdeI CTNAG 3 cut(s) 119, 357, 410
DpnI GATC 6 cut(s) 154, 159, 164, 209, 288, 434
DpnII GATC 6 cut(s) 152, 157, 162, 207, 286, 432
EaeI YGGCCR 1 cut(s) 192
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco24I GRGCYC 1 cut(s) 409
Eco31I GGTCTC 1 cut(s) 382
Eco47I GGWCC 1 cut(s) 350
EcoO109I RGGNCCY 1 cut(s) 350
EcoRII CCWGG 2 cut(s) 389, 423
EcoT38I GRGCYC 1 cut(s) 409
FaiI YATR 4 cut(s) 188, 330, 387, 444
FaqI GGGAC 2 cut(s) 123, 129
Fnu4HI GCNGC 6 cut(s) 257, 310, 313, 334, 364, 367
FriOI GRGCYC 1 cut(s) 409
Fsp4HI GCNGC 6 cut(s) 257, 310, 313, 334, 364, 367
FspBI CTAG 3 cut(s) 98, 221, 381
GluI GCNGC 6 cut(s) 257, 310, 313, 334, 364, 367
GsaI CCCAGC 1 cut(s) 133
GsuI CTGGAG 1 cut(s) 446
HaeIII GGCC 3 cut(s) 143, 194, 423
HapII CCGG 2 cut(s) 144, 273
HindIII AAGCTT 1 cut(s) 39
HinfI GANTC 1 cut(s) 117
HpaII CCGG 2 cut(s) 144, 273
HphI GGTGA 5 cut(s) 101, 113, 290, 296, 353
Hpy188I TCNGA 3 cut(s) 157, 162, 167
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 3 cut(s) 81, 85, 240
HpyCH4III ACNGT 4 cut(s) 21, 34, 269, 417
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 2 cut(s) 248, 259
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 333
HpyF3I CTNAG 3 cut(s) 119, 357, 410
HpySE526I ACGT 1 cut(s) 204
Kzo9I GATC 6 cut(s) 152, 157, 162, 207, 286, 432
Lsp1109I GCAGC 1 cut(s) 243
MaeI CTAG 3 cut(s) 98, 221, 381
MaeII ACGT 1 cut(s) 204
MalI GATC 6 cut(s) 154, 159, 164, 209, 288, 434
MboI GATC 6 cut(s) 152, 157, 162, 207, 286, 432
MboII GAAGA 1 cut(s) 18
MflI RGATCY 2 cut(s) 157, 432
MhlI GDGCHC 1 cut(s) 409
MluCI AATT 1 cut(s) 260
MlyI GAGTC 1 cut(s) 111
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 6 cut(s) 16, 19, 34, 190, 337, 341
MspI CCGG 2 cut(s) 144, 273
MspR9I CCNGG 2 cut(s) 391, 425
MvaI CCWGG 2 cut(s) 391, 425
MwoI GCNNNNNNNGC 2 cut(s) 245, 333
NdeII GATC 6 cut(s) 152, 157, 162, 207, 286, 432
NmeAIII GCCGAG 1 cut(s) 220
PkrI GCNGC 6 cut(s) 258, 311, 314, 335, 365, 368
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
PpuMI RGGWCCY 1 cut(s) 350
Psp5II RGGWCCY 1 cut(s) 350
Psp6I CCWGG 2 cut(s) 389, 423
PspFI CCCAGC 1 cut(s) 129
PspGI CCWGG 2 cut(s) 389, 423
PspPI GGNCC 2 cut(s) 350, 421
PspPPI RGGWCCY 1 cut(s) 350
PsuI RGATCY 2 cut(s) 157, 432
SatI GCNGC 6 cut(s) 257, 310, 313, 334, 364, 367
Sau3AI GATC 6 cut(s) 152, 157, 162, 207, 286, 432
Sau96I GGNCC 2 cut(s) 350, 421
SchI GAGTC 1 cut(s) 111
ScrFI CCNGG 2 cut(s) 391, 425
SduI GDGCHC 1 cut(s) 409
SetI ASST 5 cut(s) 43, 103, 207, 352, 386
SinI GGWCC 1 cut(s) 350
SpeI ACTAGT 1 cut(s) 220
Sse9I AATT 1 cut(s) 260
SsiI CCGC 5 cut(s) 309, 312, 333, 363, 366
SspMI CTAG 3 cut(s) 98, 221, 381
StyD4I CCNGG 2 cut(s) 389, 423
TaaI ACNGT 4 cut(s) 21, 34, 269, 417
TaiI ACGT 1 cut(s) 207
TaqI TCGA 3 cut(s) 36, 58, 179
TasI AATT 1 cut(s) 260
TauI GCSGC 5 cut(s) 312, 315, 336, 366, 369
TscAI CASTG 3 cut(s) 127, 272, 343
TseI GCWGC 1 cut(s) 256
TspRI CASTG 3 cut(s) 127, 272, 343
VpaK11BI GGWCC 1 cut(s) 350
XspI CTAG 3 cut(s) 98, 221, 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.