Rh1CG201100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000981
Physical Location & Seq
Reverse (-)
43753395 .. 43753834
440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG201100.1

Sequence Viewer

Length: 294 bp
ATGGTGGTCGAGGATGACAACGTCGGTGGCGAATGGGTTTCCTCTTCGGCGGCAAGGACTGTAGCGGGGTTACAATTAGACAGTGACGATGATGATGGTGCTCTCTCTCCCATGCCGGAATTGCACTTTCTTCTATTGGGCCCAAATCTTGGCGGCGGTGACAAAGACTTTTGCGGTGGTGATGGGAAAGACTGCGGCGGCAGTGGTGAAGGTGGTTTTGCTGAGGGAGGCGGTTGCTTGGTTGCTAGGGAGGCTAGGGTTTTCTATTGGGTTCCAAGATGGAGTGAATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.02

Weight (kDa)

4.05

Isoelectric Point (pI)

46.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 149
AciI CCGC 8 cut(s) 50, 65, 153, 156, 174, 195, 198, 231
AfiI CCNNNNNNNGG 1 cut(s) 149
Alw21I GWGCWC 1 cut(s) 103
AoxI GGCC 1 cut(s) 139
ApaI GGGCCC 1 cut(s) 143
AspS9I GGNCC 2 cut(s) 139, 140
AsuHPI GGTGA 3 cut(s) 170, 191, 218
BaeGI GKGCMC 1 cut(s) 143
BanII GRGCYC 1 cut(s) 143
Bbv12I GWGCWC 1 cut(s) 103
BbvCI CCTCAGC 1 cut(s) 222
BccI CCATC 3 cut(s) 89, 176, 273
BfaI CTAG 2 cut(s) 246, 255
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 4 cut(s) 51, 154, 196, 199
BlsI GCNGC 4 cut(s) 52, 155, 197, 200
BmgT120I GGNCC 2 cut(s) 139, 140
BmiI GGNNCC 2 cut(s) 141, 273
Bpu10I CCTNAGC 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 149
BseGI GGATG 1 cut(s) 19
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 1 cut(s) 213
BseSI GKGCMC 1 cut(s) 143
BshFI GGCC 1 cut(s) 141
BsiHKAI GWGCWC 1 cut(s) 103
BsiSI CCGG 1 cut(s) 116
BslI CCNNNNNNNGG 1 cut(s) 149
BsnI GGCC 1 cut(s) 141
Bsp120I GGGCCC 1 cut(s) 139
Bsp1286I GDGCHC 2 cut(s) 103, 143
BspACI CCGC 8 cut(s) 50, 65, 153, 156, 174, 195, 198, 231
BspANI GGCC 1 cut(s) 141
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 2 cut(s) 141, 273
Bst4CI ACNGT 2 cut(s) 61, 83
Bst6I CTCTTC 1 cut(s) 49
BstDEI CTNAG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 19
BstMWI GCNNNNNNNGC 2 cut(s) 121, 251
BstSFI CTRYAG 1 cut(s) 60
BstSLI GKGCMC 1 cut(s) 143
BsuRI GGCC 1 cut(s) 141
BtsCI GGATG 1 cut(s) 19
BtsI GCAGTG 1 cut(s) 208
BtsIMutI CAGTG 2 cut(s) 88, 208
Cfr13I GGNCC 2 cut(s) 139, 140
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 1 cut(s) 112
CviJI RGCY 2 cut(s) 141, 254
CviKI_1 RGCY 2 cut(s) 141, 254
DdeI CTNAG 1 cut(s) 222
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 143
EcoT38I GRGCYC 1 cut(s) 143
FaeI CATG 1 cut(s) 115
FaiI YATR 1 cut(s) 113
FatI CATG 1 cut(s) 111
FauI CCCGC 1 cut(s) 58
Fnu4HI GCNGC 4 cut(s) 51, 154, 196, 199
FokI GGATG 1 cut(s) 26
FriOI GRGCYC 1 cut(s) 143
Fsp4HI GCNGC 4 cut(s) 51, 154, 196, 199
FspBI CTAG 2 cut(s) 246, 255
GluI GCNGC 4 cut(s) 51, 154, 196, 199
HaeIII GGCC 1 cut(s) 141
HapII CCGG 1 cut(s) 116
Hin1II CATG 1 cut(s) 115
HinfI GANTC 1 cut(s) 287
HpaII CCGG 1 cut(s) 116
HphI GGTGA 3 cut(s) 170, 191, 218
Hpy188III TCNNGA 1 cut(s) 291
Hpy99I CGWCG 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 2 cut(s) 61, 83
HpyCH4IV ACGT 1 cut(s) 21
HpyCH4V TGCA 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 2 cut(s) 121, 251
HpyF3I CTNAG 1 cut(s) 222
HpySE526I ACGT 1 cut(s) 21
Hsp92II CATG 1 cut(s) 115
LpnPI CCDG 1 cut(s) 129
MaeI CTAG 2 cut(s) 246, 255
MaeII ACGT 1 cut(s) 21
MaeIII GTNAC 3 cut(s) 69, 83, 158
MboII GAAGA 2 cut(s) 36, 122
MhlI GDGCHC 2 cut(s) 103, 143
MluCI AATT 2 cut(s) 74, 119
MnlI CCTC 5 cut(s) 4, 52, 217, 221, 244
MspI CCGG 1 cut(s) 116
MwoI GCNNNNNNNGC 2 cut(s) 121, 251
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 2 cut(s) 141, 273
NmuCI GTSAC 2 cut(s) 83, 158
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PfeI GAWTC 1 cut(s) 287
PflFI GACNNNGTC 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 149
PkrI GCNGC 4 cut(s) 52, 155, 197, 200
PspN4I GGNNCC 2 cut(s) 141, 273
PspOMI GGGCCC 1 cut(s) 139
PspPI GGNCC 2 cut(s) 139, 140
PsyI GACNNNGTC 1 cut(s) 20
SatI GCNGC 4 cut(s) 51, 154, 196, 199
Sau96I GGNCC 2 cut(s) 139, 140
SduI GDGCHC 2 cut(s) 103, 143
SetI ASST 2 cut(s) 24, 214
SfcI CTRYAG 1 cut(s) 60
Sse9I AATT 2 cut(s) 74, 119
SsiI CCGC 8 cut(s) 50, 65, 153, 156, 174, 195, 198, 231
SspMI CTAG 2 cut(s) 246, 255
TaaI ACNGT 2 cut(s) 61, 83
TaiI ACGT 1 cut(s) 24
TaqI TCGA 1 cut(s) 9
TasI AATT 2 cut(s) 74, 119
TauI GCSGC 4 cut(s) 53, 156, 198, 201
TfiI GAWTC 1 cut(s) 287
TscAI CASTG 2 cut(s) 88, 208
TseFI GTSAC 2 cut(s) 83, 158
Tsp45I GTSAC 2 cut(s) 83, 158
TspRI CASTG 2 cut(s) 88, 208
Tth111I GACNNNGTC 1 cut(s) 20
Van91I CCANNNNNTGG 1 cut(s) 149
XspI CTAG 2 cut(s) 246, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.