RLG00000027919

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000981
Physical Location & Seq
Forward (+)
16847543 .. 16849351
1809 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027919

Sequence Viewer

Length: 621 bp
ATGACGCTCTCTCTCTTGAGAGCTACCCTAAGGTCACAACCGGCCTTGAATAGTAGCAGCGGCGATGCAAACTCCATGCGTCTCAGTAGAGAGGTTTCCTATCTACGTGACGCCTCTGCATCTTGGATTTGGAAGGGCGGTGACGCCTCTCTTTCTCCTTCTCTCCTTGGTAGCGATTGTGACTGGCTTCGACGTCCCTTGAATTTATTCCTGGATCGATCTTGTCTTCTTGATCGACCGGAGCTTTTGATGGCGGTCACCTCGGCTGCGATGGTGCGAGTTTCTTCGTCCTCAATTTGGATAGGTGATGTGGGATGGGGAATCAATGATGGATGTGTTGATGTTGTCGAAGTCTCGGCGGCGGTGATAAAGACTTTTGAGATGGTGATGGGAAAGCTTGCGACAGAAGTGGTGAAGGTGGTTCTGCTGAGGGGGGCGGTTGCTCGGCAGCTATGTAGGCTAGGACCGTCCCTAGCACCAGTACCTCTCCGGAGGCCAATGGCTGGGCATCAGAATAATTACAGGGGCAGTGCTTACGTCACAATGCATGGACGTTTAACCAAGCTGGTTAAAGGCCACTCGTTCCCTGAGACGTGGTTCACTGGATCTGCTCCAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

22.36

Weight (kDa)

9.63

Isoelectric Point (pI)

46.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 196
AccB7I CCANNNNNTGG 1 cut(s) 503
AccIII TCCGGA 1 cut(s) 489
AciI CCGC 6 cut(s) 60, 138, 254, 359, 362, 437
AclWI GGATC 2 cut(s) 222, 613
AcsI RAATTY 1 cut(s) 202
AcyI GRCGYC 3 cut(s) 111, 144, 193
AfaI GTAC 1 cut(s) 483
AfiI CCNNNNNNNGG 2 cut(s) 297, 503
AgsI TTSAA 2 cut(s) 49, 202
AjiI CACGTC 1 cut(s) 594
AjnI CCWGG 1 cut(s) 210
AluBI AGCT 5 cut(s) 23, 244, 397, 451, 565
AluI AGCT 5 cut(s) 23, 244, 397, 451, 565
Alw26I GTCTC 3 cut(s) 86, 358, 584
AlwI GGATC 2 cut(s) 222, 613
Aor13HI TCCGGA 1 cut(s) 489
AoxI GGCC 3 cut(s) 42, 494, 574
ApeKI GCWGC 3 cut(s) 57, 266, 448
ApoI RAATTY 1 cut(s) 202
Asp700I GAANNNNTTC 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 464
AsuHPI GGTGA 6 cut(s) 152, 250, 317, 376, 397, 424
AvaII GGWCC 1 cut(s) 464
AxyI CCTNAGG 1 cut(s) 29
BbsI GAAGAC 1 cut(s) 218
BbvCI CCTCAGC 1 cut(s) 428
BbvI GCAGC 3 cut(s) 69, 253, 460
BccI CCATC 6 cut(s) 244, 265, 309, 323, 376, 382
BciT130I CCWGG 1 cut(s) 212
BcoDI GTCTC 3 cut(s) 86, 358, 584
BfaI CTAG 2 cut(s) 461, 473
BisI GCNGC 5 cut(s) 58, 61, 267, 360, 449
BlsI GCNGC 5 cut(s) 59, 62, 268, 361, 450
Bme1390I CCNGG 1 cut(s) 212
Bme18I GGWCC 1 cut(s) 464
BmgBI CACGTC 1 cut(s) 594
BmgT120I GGNCC 1 cut(s) 464
BmrFI CCNGG 1 cut(s) 212
BmsI GCATC 3 cut(s) 55, 128, 517
BpiI GAAGAC 1 cut(s) 218
Bpu10I CCTNAGC 1 cut(s) 428
BpuEI CTTGAG 1 cut(s) 37
Bsa29I ATCGAT 1 cut(s) 217
BsaAI YACGTR 1 cut(s) 107
BsaHI GRCGYC 3 cut(s) 111, 144, 193
BsaJI CCNNGG 2 cut(s) 166, 261
BsaWI WCCGGW 2 cut(s) 238, 489
Bsc4I CCNNNNNNNGG 2 cut(s) 297, 503
Bse118I RCCGGY 1 cut(s) 40
Bse1I ACTGG 3 cut(s) 188, 479, 607
Bse21I CCTNAGG 1 cut(s) 29
BseAI TCCGGA 1 cut(s) 489
BseBI CCWGG 1 cut(s) 212
BseCI ATCGAT 1 cut(s) 217
BseDI CCNNGG 2 cut(s) 166, 261
BseGI GGATG 2 cut(s) 320, 338
BseLI CCNNNNNNNGG 2 cut(s) 297, 503
BseMII CTCAG 3 cut(s) 97, 419, 579
BseNI ACTGG 3 cut(s) 188, 479, 607
BseXI GCAGC 3 cut(s) 69, 253, 460
BseYI CCCAGC 1 cut(s) 503
Bsh1285I CGRYCG 1 cut(s) 239
BshFI GGCC 3 cut(s) 44, 496, 576
BshVI ATCGAT 1 cut(s) 217
BsiEI CGRYCG 1 cut(s) 239
BsiSI CCGG 3 cut(s) 41, 239, 490
BslFI GGGAC 2 cut(s) 180, 454
BslI CCNNNNNNNGG 2 cut(s) 297, 503
BsmAI GTCTC 3 cut(s) 86, 358, 584
BsmBI CGTCTC 2 cut(s) 86, 584
BsmFI GGGAC 2 cut(s) 180, 454
BsnI GGCC 3 cut(s) 44, 496, 576
Bsp13I TCCGGA 1 cut(s) 489
Bsp143I GATC 4 cut(s) 214, 218, 232, 605
BspACI CCGC 6 cut(s) 60, 138, 254, 359, 362, 437
BspANI GGCC 3 cut(s) 44, 496, 576
BspCNI CTCAG 3 cut(s) 96, 420, 580
BspDI ATCGAT 1 cut(s) 217
BspEI TCCGGA 1 cut(s) 489
BspPI GGATC 2 cut(s) 222, 613
BsrFI RCCGGY 1 cut(s) 40
BsrI ACTGG 3 cut(s) 188, 479, 607
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 2 cut(s) 166, 261
BssMI GATC 4 cut(s) 214, 218, 232, 605
BssNI GRCGYC 3 cut(s) 111, 144, 193
BssT1I CCWWGG 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 212
Bst4CI ACNGT 1 cut(s) 468
BstACI GRCGYC 3 cut(s) 111, 144, 193
BstBAI YACGTR 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 399
BstDEI CTNAG 4 cut(s) 29, 83, 428, 588
BstEII GGTNACC 1 cut(s) 256
BstF5I GGATG 2 cut(s) 320, 338
BstKTI GATC 4 cut(s) 217, 221, 235, 608
BstMAI GTCTC 3 cut(s) 86, 358, 584
BstMBI GATC 4 cut(s) 214, 218, 232, 605
BstMCI CGRYCG 1 cut(s) 239
BstMWI GCNNNNNNNGC 1 cut(s) 457
BstNI CCWGG 1 cut(s) 212
BstPI GGTNACC 1 cut(s) 256
BstSCI CCNGG 1 cut(s) 210
BstV1I GCAGC 3 cut(s) 69, 253, 460
BstV2I GAAGAC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 605
BstYI RGATCY 1 cut(s) 605
Bsu15I ATCGAT 1 cut(s) 217
Bsu36I CCTNAGG 1 cut(s) 29
BsuRI GGCC 3 cut(s) 44, 496, 576
BsuTUI ATCGAT 1 cut(s) 217
BtgZI GCGATG 2 cut(s) 78, 284
BtrI CACGTC 1 cut(s) 594
BtsCI GGATG 2 cut(s) 320, 338
BtsI GCAGTG 1 cut(s) 535
BtsIMutI CAGTG 2 cut(s) 535, 600
Cac8I GCNNGC 1 cut(s) 399
Cfr10I RCCGGY 1 cut(s) 40
Cfr13I GGNCC 1 cut(s) 464
ClaI ATCGAT 1 cut(s) 217
CseI GACGC 4 cut(s) 13, 68, 119, 152
Csp6I GTAC 1 cut(s) 482
CviAII CATG 2 cut(s) 76, 548
CviQI GTAC 1 cut(s) 482
DdeI CTNAG 4 cut(s) 29, 83, 428, 588
DpnI GATC 4 cut(s) 216, 220, 234, 607
DpnII GATC 4 cut(s) 214, 218, 232, 605
Eco130I CCWWGG 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 464
Eco81I CCTNAGG 1 cut(s) 29
Eco91I GGTNACC 1 cut(s) 256
EcoO65I GGTNACC 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 210
EcoT14I CCWWGG 1 cut(s) 166
EcoT22I ATGCAT 1 cut(s) 549
ErhI CCWWGG 1 cut(s) 166
Esp3I CGTCTC 2 cut(s) 86, 584
FaeI CATG 2 cut(s) 79, 551
FaiI YATR 3 cut(s) 77, 454, 549
FaqI GGGAC 2 cut(s) 180, 454
FatI CATG 2 cut(s) 75, 547
Fnu4HI GCNGC 5 cut(s) 58, 61, 267, 360, 449
FokI GGATG 2 cut(s) 327, 345
Fsp4HI GCNGC 5 cut(s) 58, 61, 267, 360, 449
FspBI CTAG 2 cut(s) 461, 473
GluI GCNGC 5 cut(s) 58, 61, 267, 360, 449
GsaI CCCAGC 1 cut(s) 507
HaeIII GGCC 3 cut(s) 44, 496, 576
HapII CCGG 3 cut(s) 41, 239, 490
HgaI GACGC 4 cut(s) 13, 68, 119, 152
Hin1I GRCGYC 3 cut(s) 111, 144, 193
Hin1II CATG 2 cut(s) 79, 551
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 1 cut(s) 321
HpaII CCGG 3 cut(s) 41, 239, 490
HphI GGTGA 6 cut(s) 152, 250, 317, 376, 397, 424
Hpy166II GTNNAC 1 cut(s) 600
Hpy188I TCNGA 1 cut(s) 513
Hpy188III TCNNGA 3 cut(s) 16, 230, 490
Hpy8I GTNNAC 1 cut(s) 600
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 3 cut(s) 127, 168, 409
HpyCH4III ACNGT 1 cut(s) 468
HpyCH4IV ACGT 5 cut(s) 106, 193, 537, 553, 593
HpyCH4V TGCA 3 cut(s) 68, 119, 547
HpyF10VI GCNNNNNNNGC 1 cut(s) 457
HpyF3I CTNAG 4 cut(s) 29, 83, 428, 588
HpySE526I ACGT 5 cut(s) 106, 193, 537, 553, 593
Hsp92I GRCGYC 3 cut(s) 111, 144, 193
Hsp92II CATG 2 cut(s) 79, 551
Kpn2I TCCGGA 1 cut(s) 489
Kzo9I GATC 4 cut(s) 214, 218, 232, 605
LmnI GCTCC 2 cut(s) 241, 616
Lsp1109I GCAGC 3 cut(s) 69, 253, 460
LweI GCATC 3 cut(s) 55, 128, 517
MaeI CTAG 2 cut(s) 461, 473
MaeII ACGT 5 cut(s) 106, 193, 537, 553, 593
MaeIII GTNAC 6 cut(s) 33, 107, 140, 179, 256, 538
MalI GATC 4 cut(s) 216, 220, 234, 607
MboI GATC 4 cut(s) 214, 218, 232, 605
MboII GAAGA 2 cut(s) 218, 276
MflI RGATCY 1 cut(s) 605
MluCI AATT 3 cut(s) 202, 294, 517
MnlI CCTC 8 cut(s) 85, 124, 157, 271, 301, 423, 486, 495
Mph1103I ATGCAT 1 cut(s) 549
MroI TCCGGA 1 cut(s) 489
MroXI GAANNNNTTC 1 cut(s) 206
MseI TTAA 2 cut(s) 557, 570
MspA1I CMGCKG 1 cut(s) 60
MspI CCGG 3 cut(s) 41, 239, 490
MspR9I CCNGG 1 cut(s) 212
MvaI CCWGG 1 cut(s) 212
MwoI GCNNNNNNNGC 1 cut(s) 457
NdeII GATC 4 cut(s) 214, 218, 232, 605
NlaIII CATG 2 cut(s) 79, 551
NmeAIII GCCGAG 3 cut(s) 242, 335, 424
NmuCI GTSAC 6 cut(s) 33, 107, 140, 179, 256, 538
NsiI ATGCAT 1 cut(s) 549
PdmI GAANNNNTTC 1 cut(s) 206
PfeI GAWTC 1 cut(s) 321
PflMI CCANNNNNTGG 1 cut(s) 503
PfoI TCCNGGA 1 cut(s) 210
PkrI GCNGC 5 cut(s) 59, 62, 268, 361, 450
Ppu21I YACGTR 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 210
PspEI GGTNACC 1 cut(s) 256
PspFI CCCAGC 1 cut(s) 503
PspGI CCWGG 1 cut(s) 210
PspPI GGNCC 1 cut(s) 464
PsuI RGATCY 1 cut(s) 605
RsaI GTAC 1 cut(s) 483
RsaNI GTAC 1 cut(s) 482
SaqAI TTAA 2 cut(s) 557, 570
SatI GCNGC 5 cut(s) 58, 61, 267, 360, 449
Sau3AI GATC 4 cut(s) 214, 218, 232, 605
Sau96I GGNCC 1 cut(s) 464
ScrFI CCNGG 1 cut(s) 212
SfaNI GCATC 3 cut(s) 55, 128, 517
SinI GGWCC 1 cut(s) 464
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 3 cut(s) 202, 294, 517
SsiI CCGC 6 cut(s) 60, 138, 254, 359, 362, 437
SspMI CTAG 2 cut(s) 461, 473
StyD4I CCNGG 1 cut(s) 210
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 1 cut(s) 468
TaiI ACGT 5 cut(s) 109, 196, 540, 556, 596
TaqI TCGA 4 cut(s) 190, 217, 235, 348
TasI AATT 3 cut(s) 202, 294, 517
TauI GCSGC 2 cut(s) 63, 362
TfiI GAWTC 1 cut(s) 321
Tru1I TTAA 2 cut(s) 557, 570
Tru9I TTAA 2 cut(s) 557, 570
TscAI CASTG 2 cut(s) 535, 607
TseFI GTSAC 6 cut(s) 33, 107, 140, 179, 256, 538
TseI GCWGC 3 cut(s) 57, 266, 448
Tsp45I GTSAC 6 cut(s) 33, 107, 140, 179, 256, 538
TspRI CASTG 2 cut(s) 535, 607
Van91I CCANNNNNTGG 1 cut(s) 503
VpaK11BI GGWCC 1 cut(s) 464
XapI RAATTY 1 cut(s) 202
XmnI GAANNNNTTC 1 cut(s) 206
XspI CTAG 2 cut(s) 461, 473
ZraI GACGTC 1 cut(s) 194
Zsp2I ATGCAT 1 cut(s) 549
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.