Rroxscaffold_2G00115510

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000981
Physical Location & Seq
Forward (+)
41765713 .. 41767583
1871 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00115510.1

Sequence Viewer

Length: 630 bp
ATGGTGGTTGACGATGACGATGTCGGCGGCGAACGAGTTTTCTCTTCAGCGGGAAAGATTGTAGCTCGGGTTACAATTCGACAAAGGACGATGGTGATGGAGCTCTCCCTCCCGTGTCGGAATTGTATTTTCTTTTATTGGGCCGAAATCTTGGCGGTGGTGACAAAGACTACTACGGTGGTGATGGGAAAGGTTGTGGCGGCGGTGGTGAAGGAAGTTTTGCTGAGGAGGGCGGCTGTTTGGCTGCTAGGGAGTCTAGGGTTTGCTCATCGGATTCCAAGATTGTTGGGCCTGGAGTGGACTTTTGCTCATAGTTGGGGTCTTTGGGCTGAAATTTGGATGGTGGGCTCCTTGTGGGCTGCTTGGGTCTCTTGGTGGGTTGAGATTGATTGGAGCTCTTCATCTTGGGCTGTTTCGATGAACGAAGATGGAGTGGATGGTGACACGTCGCCCACGACGCTTGCTCTCGCCATCGCCGCGCCGAAACTAGTCGTTGTGCTCTCCGCTGCTAGGCTCGACGCCAAGCCGACGGTCCTCGTCGGCCGAGAAGCTCGGCGAGGCCGGGGGTTGACCTTCGAAGGAATCGACGACGGACTGAAAATTGCTATCTCTGCTATTGTGCGGTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

22.94

Weight (kDa)

7.8

Isoelectric Point (pI)

21.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 479
AciI CCGC 9 cut(s) 27, 50, 155, 200, 203, 233, 477, 504, 622
AcoI YGGCCR 1 cut(s) 541
AcsI RAATTY 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 519
AfiI CCNNNNNNNGG 1 cut(s) 510
AflIII ACRYGT 1 cut(s) 444
AhlI ACTAGT 1 cut(s) 487
AjiI CACGTC 1 cut(s) 447
AjnI CCWGG 1 cut(s) 291
AluBI AGCT 4 cut(s) 65, 103, 396, 551
AluI AGCT 4 cut(s) 65, 103, 396, 551
Alw21I GWGCWC 3 cut(s) 105, 398, 501
Alw26I GTCTC 1 cut(s) 373
Ama87I CYCGRG 1 cut(s) 66
AoxI GGCC 4 cut(s) 141, 289, 541, 559
ApeKI GCWGC 3 cut(s) 244, 359, 506
ApoI RAATTY 1 cut(s) 333
AspLEI GCGC 1 cut(s) 481
AspS9I GGNCC 3 cut(s) 141, 289, 532
AsuC2I CCSGG 1 cut(s) 563
AsuHPI GGTGA 5 cut(s) 106, 172, 193, 220, 452
AsuII TTCGAA 1 cut(s) 576
AvaI CYCGRG 1 cut(s) 66
AvaII GGWCC 1 cut(s) 532
BanII GRGCYC 3 cut(s) 105, 350, 398
Bbv12I GWGCWC 3 cut(s) 105, 398, 501
BbvCI CCTCAGC 1 cut(s) 224
BbvI GCAGC 3 cut(s) 231, 346, 493
BccI CCATC 7 cut(s) 85, 91, 178, 334, 422, 431, 479
BciT130I CCWGG 1 cut(s) 293
BcnI CCSGG 1 cut(s) 563
BcoDI GTCTC 1 cut(s) 373
BcuI ACTAGT 1 cut(s) 487
BfaI CTAG 4 cut(s) 248, 257, 488, 510
BisI GCNGC 7 cut(s) 28, 201, 234, 245, 360, 477, 507
BlsI GCNGC 7 cut(s) 29, 202, 235, 246, 361, 478, 508
Bme1390I CCNGG 2 cut(s) 293, 563
Bme18I GGWCC 1 cut(s) 532
BmeT110I CYCGRG 1 cut(s) 66
BmgBI CACGTC 1 cut(s) 447
BmgT120I GGNCC 3 cut(s) 141, 289, 532
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 2 cut(s) 293, 563
BpmI CTGGAG 1 cut(s) 314
Bpu10I CCTNAGC 1 cut(s) 224
Bpu14I TTCGAA 1 cut(s) 576
BpuMI CCSGG 1 cut(s) 563
BsaHI GRCGYC 1 cut(s) 519
BsaI GGTCTC 1 cut(s) 373
BsaJI CCNNGG 1 cut(s) 562
Bsc4I CCNNNNNNNGG 1 cut(s) 510
BseBI CCWGG 1 cut(s) 293
BseDI CCNNGG 1 cut(s) 562
BseGI GGATG 2 cut(s) 345, 442
BseLI CCNNNNNNNGG 1 cut(s) 510
BseMII CTCAG 1 cut(s) 215
BseRI GAGGAG 1 cut(s) 241
BseX3I CGGCCG 1 cut(s) 541
BseXI GCAGC 3 cut(s) 231, 346, 493
Bsh1236I CGCG 1 cut(s) 479
Bsh1285I CGRYCG 1 cut(s) 544
BshFI GGCC 4 cut(s) 143, 291, 543, 561
BsiEI CGRYCG 1 cut(s) 544
BsiHKAI GWGCWC 3 cut(s) 105, 398, 501
BsiHKCI CYCGRG 1 cut(s) 66
BsiSI CCGG 1 cut(s) 562
BslI CCNNNNNNNGG 1 cut(s) 510
BsmAI GTCTC 1 cut(s) 373
BsnI GGCC 4 cut(s) 143, 291, 543, 561
Bso31I GGTCTC 1 cut(s) 373
BsoBI CYCGRG 1 cut(s) 66
Bsp119I TTCGAA 1 cut(s) 576
Bsp1286I GDGCHC 4 cut(s) 105, 350, 398, 501
BspACI CCGC 9 cut(s) 27, 50, 155, 200, 203, 233, 477, 504, 622
BspANI GGCC 4 cut(s) 143, 291, 543, 561
BspCNI CTCAG 1 cut(s) 216
BspFNI CGCG 1 cut(s) 479
BspLI GGNNCC 1 cut(s) 349
BspQI GCTCTTC 1 cut(s) 403
BspT104I TTCGAA 1 cut(s) 576
BspTNI GGTCTC 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 562
BssNI GRCGYC 1 cut(s) 519
Bst2UI CCWGG 1 cut(s) 293
Bst4CI ACNGT 2 cut(s) 178, 532
Bst6I CTCTTC 2 cut(s) 49, 403
BstACI GRCGYC 1 cut(s) 519
BstBI TTCGAA 1 cut(s) 576
BstC8I GCNNGC 1 cut(s) 462
BstDEI CTNAG 1 cut(s) 224
BstF5I GGATG 2 cut(s) 345, 442
BstFNI CGCG 1 cut(s) 479
BstHHI GCGC 1 cut(s) 481
BstMAI GTCTC 1 cut(s) 373
BstMCI CGRYCG 1 cut(s) 544
BstMWI GCNNNNNNNGC 3 cut(s) 457, 476, 611
BstNI CCWGG 1 cut(s) 293
BstSCI CCNGG 2 cut(s) 291, 561
BstUI CGCG 1 cut(s) 479
BstV1I GCAGC 3 cut(s) 231, 346, 493
BstZI CGGCCG 1 cut(s) 541
BsuRI GGCC 4 cut(s) 143, 291, 543, 561
BtgZI GCGATG 1 cut(s) 457
BtrI CACGTC 1 cut(s) 447
BtsCI GGATG 2 cut(s) 345, 442
Cac8I GCNNGC 1 cut(s) 462
CfoI GCGC 1 cut(s) 481
Cfr13I GGNCC 3 cut(s) 141, 289, 532
CseI GACGC 2 cut(s) 466, 527
CspCI CAANNNNNGTGG 2 cut(s) 442, 477
DdeI CTNAG 1 cut(s) 224
EaeI YGGCCR 1 cut(s) 541
EagI CGGCCG 1 cut(s) 541
Eam1104I CTCTTC 2 cut(s) 49, 403
EarI CTCTTC 2 cut(s) 49, 403
Ecl136II GAGCTC 2 cut(s) 103, 396
EclXI CGGCCG 1 cut(s) 541
Eco24I GRGCYC 3 cut(s) 105, 350, 398
Eco31I GGTCTC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 532
Eco52I CGGCCG 1 cut(s) 541
Eco53kI GAGCTC 2 cut(s) 103, 396
Eco57I CTGAAG 1 cut(s) 30
Eco88I CYCGRG 1 cut(s) 66
EcoICRI GAGCTC 2 cut(s) 103, 396
EcoRII CCWGG 1 cut(s) 291
EcoT38I GRGCYC 3 cut(s) 105, 350, 398
FaiI YATR 2 cut(s) 312, 628
FauI CCCGC 1 cut(s) 43
Fnu4HI GCNGC 7 cut(s) 28, 201, 234, 245, 360, 477, 507
FokI GGATG 2 cut(s) 352, 449
FriOI GRGCYC 3 cut(s) 105, 350, 398
Fsp4HI GCNGC 7 cut(s) 28, 201, 234, 245, 360, 477, 507
FspBI CTAG 4 cut(s) 248, 257, 488, 510
GlaI GCGC 1 cut(s) 480
GluI GCNGC 7 cut(s) 28, 201, 234, 245, 360, 477, 507
GsuI CTGGAG 1 cut(s) 314
HaeIII GGCC 4 cut(s) 143, 291, 543, 561
HapII CCGG 1 cut(s) 562
HgaI GACGC 2 cut(s) 466, 527
HhaI GCGC 1 cut(s) 481
Hin1I GRCGYC 1 cut(s) 519
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HincII GTYRAC 2 cut(s) 10, 570
HindII GTYRAC 2 cut(s) 10, 570
HinfI GANTC 3 cut(s) 253, 274, 582
HpaII CCGG 1 cut(s) 562
HphI GGTGA 5 cut(s) 106, 172, 193, 220, 452
Hpy166II GTNNAC 3 cut(s) 10, 300, 570
Hpy188I TCNGA 2 cut(s) 120, 273
Hpy8I GTNNAC 3 cut(s) 10, 300, 570
Hpy99I CGWCG 7 cut(s) 451, 460, 521, 532, 542, 590, 593
HpyAV CCTTC 3 cut(s) 205, 572, 583
HpyCH4III ACNGT 2 cut(s) 178, 532
HpyCH4IV ACGT 1 cut(s) 446
HpyF10VI GCNNNNNNNGC 3 cut(s) 457, 476, 611
HpyF3I CTNAG 1 cut(s) 224
HpySE526I ACGT 1 cut(s) 446
Hsp92I GRCGYC 1 cut(s) 519
HspAI GCGC 1 cut(s) 479
LguI GCTCTTC 1 cut(s) 403
LmnI GCTCC 3 cut(s) 100, 353, 393
LpnPI CCDG 3 cut(s) 278, 305, 575
Lsp1109I GCAGC 3 cut(s) 231, 346, 493
MaeI CTAG 4 cut(s) 248, 257, 488, 510
MaeII ACGT 1 cut(s) 446
MaeIII GTNAC 3 cut(s) 70, 160, 440
MboII GAAGA 3 cut(s) 36, 390, 437
MhlI GDGCHC 4 cut(s) 105, 350, 398, 501
MluCI AATT 4 cut(s) 75, 121, 333, 600
MlyI GAGTC 1 cut(s) 262
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 5 cut(s) 119, 219, 222, 545, 551
MspA1I CMGCKG 2 cut(s) 50, 506
MspI CCGG 1 cut(s) 562
MspR9I CCNGG 2 cut(s) 293, 563
MvaI CCWGG 1 cut(s) 293
MvnI CGCG 1 cut(s) 479
MwoI GCNNNNNNNGC 3 cut(s) 457, 476, 611
NciI CCSGG 1 cut(s) 563
NlaIV GGNNCC 1 cut(s) 349
NmeAIII GCCGAG 2 cut(s) 532, 569
NmuCI GTSAC 2 cut(s) 160, 440
NspV TTCGAA 1 cut(s) 576
PciSI GCTCTTC 1 cut(s) 403
PcsI WCGNNNNNNNCGW 2 cut(s) 452, 582
PfeI GAWTC 2 cut(s) 274, 582
PflFI GACNNNGTC 1 cut(s) 20
PkrI GCNGC 7 cut(s) 29, 202, 235, 246, 361, 478, 508
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
Psp124BI GAGCTC 2 cut(s) 105, 398
Psp6I CCWGG 1 cut(s) 291
PspGI CCWGG 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 3 cut(s) 141, 289, 532
PsyI GACNNNGTC 1 cut(s) 20
SacI GAGCTC 2 cut(s) 105, 398
SapI GCTCTTC 1 cut(s) 403
SatI GCNGC 7 cut(s) 28, 201, 234, 245, 360, 477, 507
Sau96I GGNCC 3 cut(s) 141, 289, 532
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 2 cut(s) 293, 563
SduI GDGCHC 4 cut(s) 105, 350, 398, 501
SetI ASST 7 cut(s) 67, 105, 195, 398, 449, 553, 575
SfuI TTCGAA 1 cut(s) 576
SinI GGWCC 1 cut(s) 532
SpeI ACTAGT 1 cut(s) 487
Sse9I AATT 4 cut(s) 75, 121, 333, 600
SsiI CCGC 9 cut(s) 27, 50, 155, 200, 203, 233, 477, 504, 622
SspMI CTAG 4 cut(s) 248, 257, 488, 510
SstI GAGCTC 2 cut(s) 105, 398
StyD4I CCNGG 2 cut(s) 291, 561
TaaI ACNGT 2 cut(s) 178, 532
TaiI ACGT 1 cut(s) 449
TaqI TCGA 5 cut(s) 79, 416, 516, 576, 585
TasI AATT 4 cut(s) 75, 121, 333, 600
TauI GCSGC 4 cut(s) 30, 203, 236, 479
TfiI GAWTC 2 cut(s) 274, 582
TseFI GTSAC 2 cut(s) 160, 440
TseI GCWGC 3 cut(s) 244, 359, 506
Tsp45I GTSAC 2 cut(s) 160, 440
TspDTI ATGAA 2 cut(s) 390, 434
TspGWI ACGGA 1 cut(s) 606
Tth111I GACNNNGTC 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 532
XapI RAATTY 1 cut(s) 333
XspI CTAG 4 cut(s) 248, 257, 488, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.