Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0000981

Physical Location & Seq

Genomic Coordinates Reverse (-)

57886070 .. 57887407

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00264120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGACGCTCTCTCTTCTCTCAAGAGCTACCCTAAGGTCGCTACCGGCCTTGATTGGCGGCGGCGGAGTTGCAAATTTTCTGACTCTCGGCAGAGAGGTTTCCCATCTACATGATGGCTCTGAACCTGGGATTTGGAAGGGCGGGAACACCTCTCTTTCTCTTCCTCTCCTTGGTGGCGACGACAATTGGCTTCGACGCCCCTTGAATTTATGCCTGGATCGGTTTTGTCTTCTTGATCGACCGGAGCCTCTGATGGCGGTCATCTTGGCTATGATGGCGCGAGTTTCCTCGTTCTCAACCTTGTTGCTTGGGTTAGGTGATGTGGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

109

Amino Acids

11.6

Weight (kDa)

6.71

Isoelectric Point (pI)

48.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000981)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0486651 RchiOBHm_Chr4g0407841 RchiOBHm_Chr6g0312071 RchiOBHm_Chr6g0312081 RchiOBHm_Chr7g0199951
rosa_laevigata	RLG00000000594 RLG00000001567 RLG00000001832 RLG00000004637 RLG00000004640 RLG00000004833 RLG00000006679 RLG00000007158 RLG00000008694 RLG00000009075 RLG00000011512 RLG00000012673 RLG00000015109 RLG00000016150 RLG00000017316 RLG00000019776 RLG00000020284 RLG00000020334 RLG00000021424 RLG00000021718 RLG00000022244 RLG00000023069 RLG00000023643 RLG00000025130 RLG00000027919 RLG00000028123 RLG00000029202 RLG00000030087 RLG00000035075 RLG00000035197 RLG00000035409 RLG00000035824
rosa_multiflora	Rmu_sc0002613.1_g000004 Rmu_ssc0000041.1_g000001
rosa_roxburghii	Rroxscaffold_1G00019920 Rroxscaffold_2G00115510 Rroxscaffold_3G00246460 Rroxscaffold_3G00264120 Rroxscaffold_5G00344800 Rroxscaffold_6G00403360 Rroxscaffold_7G00204700
rosa_rugosa	Rorug02G0168200 Rorug05G0236500 Rorug05G0287700 Rorug05G0492800 Rorug06G0461500 Rorug06G0495600
rosa_samantha	Rh1CG201100 Rh1DG303400 Rh2BG472700 Rh3AG275800 Rh5BG139300 Rh5CG230200 Rh5DG114300 Rh6AG509200 Rh6BG248700 Rh6CG280300 Rh6DG402300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	280
AciI	CCGC	5 cut(s)	57, 60, 63, 141, 257
AclWI	GGATC	1 cut(s)	225
AcsI	RAATTY	2 cut(s)	73, 205
AcyI	GRCGYC	1 cut(s)	196
AfiI	CCNNNNNNNGG	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	205
AjnI	CCWGG	2 cut(s)	124, 213
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
AlwI	GGATC	1 cut(s)	225
AoxI	GGCC	1 cut(s)	45
ApoI	RAATTY	2 cut(s)	73, 205
AspLEI	GCGC	1 cut(s)	280
AsuHPI	GGTGA	1 cut(s)	329
AxyI	CCTNAGG	1 cut(s)	32
BbsI	GAAGAC	1 cut(s)	221
BccI	CCATC	4 cut(s)	107, 111, 247, 268
BciT130I	CCWGG	2 cut(s)	126, 215
BisI	GCNGC	2 cut(s)	58, 61
BlsI	GCNGC	2 cut(s)	59, 62
Bme1390I	CCNGG	2 cut(s)	126, 215
BmiI	GGNNCC	1 cut(s)	246
BmrFI	CCNGG	2 cut(s)	126, 215
BpiI	GAAGAC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	4
BsaHI	GRCGYC	1 cut(s)	196
BsaJI	CCNNGG	2 cut(s)	125, 169
BsaWI	WCCGGW	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse118I	RCCGGY	1 cut(s)	43
Bse21I	CCTNAGG	1 cut(s)	32
BseBI	CCWGG	2 cut(s)	126, 215
BseDI	CCNNGG	2 cut(s)	125, 169
BseLI	CCNNNNNNNGG	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	280
Bsh1285I	CGRYCG	1 cut(s)	242
BshFI	GGCC	1 cut(s)	47
BsiEI	CGRYCG	1 cut(s)	242
BsiSI	CCGG	2 cut(s)	44, 242
BslI	CCNNNNNNNGG	1 cut(s)	170
BsnI	GGCC	1 cut(s)	47
Bsp143I	GATC	2 cut(s)	217, 235
BspACI	CCGC	5 cut(s)	57, 60, 63, 141, 257
BspANI	GGCC	1 cut(s)	47
BspFNI	CGCG	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	246
BspPI	GGATC	1 cut(s)	225
BsrFI	RCCGGY	1 cut(s)	43
BssAI	RCCGGY	1 cut(s)	43
BssECI	CCNNGG	2 cut(s)	125, 169
BssMI	GATC	2 cut(s)	217, 235
BssNI	GRCGYC	1 cut(s)	196
BssT1I	CCWWGG	1 cut(s)	169
Bst2UI	CCWGG	2 cut(s)	126, 215
Bst6I	CTCTTC	2 cut(s)	18, 165
BstACI	GRCGYC	1 cut(s)	196
BstDEI	CTNAG	1 cut(s)	32
BstFNI	CGCG	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	2 cut(s)	220, 238
BstMBI	GATC	2 cut(s)	217, 235
BstMCI	CGRYCG	1 cut(s)	242
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	2 cut(s)	126, 215
BstSCI	CCNGG	2 cut(s)	124, 213
BstUI	CGCG	1 cut(s)	280
BstV2I	GAAGAC	1 cut(s)	221
Bsu36I	CCTNAGG	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	47
CfoI	GCGC	1 cut(s)	280
Cfr10I	RCCGGY	1 cut(s)	43
CseI	GACGC	2 cut(s)	13, 204
CviAII	CATG	1 cut(s)	110
CviJI	RGCY	6 cut(s)	26, 47, 117, 190, 247, 269
CviKI_1	RGCY	6 cut(s)	26, 47, 117, 190, 247, 269
DdeI	CTNAG	1 cut(s)	32
DpnI	GATC	2 cut(s)	219, 237
DpnII	GATC	2 cut(s)	217, 235
Eam1104I	CTCTTC	2 cut(s)	18, 165
EarI	CTCTTC	2 cut(s)	18, 165
EciI	GGCGGA	1 cut(s)	78
Eco130I	CCWWGG	1 cut(s)	169
Eco81I	CCTNAGG	1 cut(s)	32
EcoRII	CCWGG	2 cut(s)	124, 213
EcoT14I	CCWWGG	1 cut(s)	169
ErhI	CCWWGG	1 cut(s)	169
FaeI	CATG	1 cut(s)	113
FaiI	YATR	3 cut(s)	111, 211, 272
FatI	CATG	1 cut(s)	109
FauI	CCCGC	1 cut(s)	134
Fnu4HI	GCNGC	2 cut(s)	58, 61
Fsp4HI	GCNGC	2 cut(s)	58, 61
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	2 cut(s)	58, 61
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	2 cut(s)	44, 242
HgaI	GACGC	2 cut(s)	13, 204
HhaI	GCGC	1 cut(s)	280
Hin1I	GRCGYC	1 cut(s)	196
Hin1II	CATG	1 cut(s)	113
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	2 cut(s)	44, 242
HphI	GGTGA	1 cut(s)	329
Hpy188I	TCNGA	3 cut(s)	81, 121, 252
Hpy188III	TCNNGA	2 cut(s)	21, 233
Hpy99I	CGWCG	2 cut(s)	182, 198
HpyAV	CCTTC	1 cut(s)	130
HpyCH4V	TGCA	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	1 cut(s)	32
Hsp92I	GRCGYC	1 cut(s)	196
Hsp92II	CATG	1 cut(s)	113
HspAI	GCGC	1 cut(s)	278
Kzo9I	GATC	2 cut(s)	217, 235
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	6 cut(s)	57, 111, 138, 200, 227, 255
MalI	GATC	2 cut(s)	219, 237
MboI	GATC	2 cut(s)	217, 235
MboII	GAAGA	3 cut(s)	5, 152, 221
MfeI	CAATTG	1 cut(s)	184
MluCI	AATT	3 cut(s)	73, 184, 205
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	5 cut(s)	88, 160, 174, 258, 298
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	2 cut(s)	44, 242
MspR9I	CCNGG	2 cut(s)	126, 215
MunI	CAATTG	1 cut(s)	184
MvaI	CCWGG	2 cut(s)	126, 215
MvnI	CGCG	1 cut(s)	280
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	2 cut(s)	217, 235
NlaIII	CATG	1 cut(s)	113
NlaIV	GGNNCC	1 cut(s)	246
NmeAIII	GCCGAG	1 cut(s)	66
PkrI	GCNGC	2 cut(s)	59, 62
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	124, 213
PspGI	CCWGG	2 cut(s)	124, 213
PspN4I	GGNNCC	1 cut(s)	246
RseI	CAYNNNNRTG	1 cut(s)	108
SatI	GCNGC	2 cut(s)	58, 61
Sau3AI	GATC	2 cut(s)	217, 235
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	2 cut(s)	126, 215
SetI	ASST	7 cut(s)	28, 38, 99, 127, 152, 302, 319
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	1 cut(s)	19
SmoI	CTYRAG	1 cut(s)	19
Sse9I	AATT	3 cut(s)	73, 184, 205
SsiI	CCGC	5 cut(s)	57, 60, 63, 141, 257
StyD4I	CCNGG	2 cut(s)	124, 213
StyI	CCWWGG	1 cut(s)	169
TaqI	TCGA	2 cut(s)	193, 238
TasI	AATT	3 cut(s)	73, 184, 205
TauI	GCSGC	2 cut(s)	60, 63
XapI	RAATTY	2 cut(s)	73, 205
XcmI	CCANNNNNNNNNTGG	1 cut(s)	110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.