RLG00000035824

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000981
Physical Location & Seq
Forward (+)
72197486 .. 72198261
776 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035824

Sequence Viewer

Length: 636 bp
ATGGCATCACAAATTATAGTTAAAATTATACTTCAATTACCAACAATGACAGTATATTGTAAGTATTGGAAACATGACACTCTCTCTTCTCTCAAGAGCTACCCTAAGGTCGCAGCCGCTGTTACAAATTTTCTGACTCTCAGCAGAGAGGTTTCCCATCTACACGATGGCTCTGAACCTTGGATTTGGAAGGGCGGGGACACCTCTCTTTCTCCTCCTCTCCTTGGTGGCGACGGTAATTGGCTTCGACGCCCCTTGAATTTATGCCTGGATCGGTTTTGTCTTCTTGATCGACCGGAGACTCTGATGGCTGTCATCTTGGCTGCGATGGCGCGAGTTTCCTCGTTCTCAACCTTGTTGCTTGGGTTAGGTGATGTGGGATGGGGACTTGGTGATGGTTGTGTTGCTCAGGCAAGGACTGTAGTGGGGTTACAATTAGACAGTGACGATGGTGATGGAGCTCTCGAGCTCTCTCCTATGCCGGAATTGCACTTTCTTCTATTGGGTCGAAATATCGGCGGCGGTGACGAAGACTTTTGCGGTGGTGATGGGAAAGACTGCGGCGGCAGTGGTGAAGGTGGTTTTCCTGAGGGGGGCGGCTGCTTGGTTGCTAGGGAGGCTAGGGTTTGCTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

212

Amino Acids

22.47

Weight (kDa)

4.91

Isoelectric Point (pI)

41.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 334
AciI CCGC 8 cut(s) 117, 195, 519, 522, 540, 561, 564, 597
AclWI GGATC 1 cut(s) 279
AcsI RAATTY 2 cut(s) 127, 259
AcyI GRCGYC 1 cut(s) 250
AfiI CCNNNNNNNGG 2 cut(s) 224, 593
AgsI TTSAA 2 cut(s) 35, 259
AjnI CCWGG 1 cut(s) 267
AluBI AGCT 3 cut(s) 99, 461, 469
AluI AGCT 3 cut(s) 99, 461, 469
Alw21I GWGCWC 2 cut(s) 463, 471
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 1 cut(s) 279
AlwNI CAGNNNCTG 1 cut(s) 119
Ama87I CYCGRG 1 cut(s) 464
ApeKI GCWGC 3 cut(s) 113, 323, 600
ApoI RAATTY 2 cut(s) 127, 259
AspLEI GCGC 1 cut(s) 334
AsuHPI GGTGA 6 cut(s) 383, 404, 464, 536, 557, 584
AvaI CYCGRG 1 cut(s) 464
AxyI CCTNAGG 2 cut(s) 105, 588
BanII GRGCYC 2 cut(s) 463, 471
BbsI GAAGAC 2 cut(s) 275, 537
Bbv12I GWGCWC 2 cut(s) 463, 471
BbvI GCAGC 3 cut(s) 125, 310, 587
BccI CCATC 9 cut(s) 161, 165, 301, 322, 375, 389, 443, 449, 542
BciT130I CCWGG 1 cut(s) 269
BcoDI GTCTC 1 cut(s) 293
BfaI CTAG 2 cut(s) 612, 621
BfmI CTRYAG 1 cut(s) 420
BisI GCNGC 8 cut(s) 114, 117, 324, 520, 562, 565, 598, 601
BlsI GCNGC 8 cut(s) 115, 118, 325, 521, 563, 566, 599, 602
Bme1390I CCNGG 1 cut(s) 269
BmeT110I CYCGRG 1 cut(s) 464
BmrFI CCNGG 1 cut(s) 269
BmsI GCATC 1 cut(s) 14
BpiI GAAGAC 2 cut(s) 275, 537
Bpu10I CCTNAGC 1 cut(s) 408
BpuEI CTTGAG 1 cut(s) 77
BsaHI GRCGYC 1 cut(s) 250
BsaJI CCNNGG 2 cut(s) 179, 223
BsaWI WCCGGW 1 cut(s) 295
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 593
Bse21I CCTNAGG 2 cut(s) 105, 588
BseBI CCWGG 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 179, 223
BseGI GGATG 1 cut(s) 386
BseLI CCNNNNNNNGG 2 cut(s) 224, 593
BseMII CTCAG 3 cut(s) 154, 422, 579
BseRI GAGGAG 2 cut(s) 204, 207
BseXI GCAGC 3 cut(s) 125, 310, 587
Bsh1236I CGCG 1 cut(s) 334
Bsh1285I CGRYCG 1 cut(s) 296
BsiEI CGRYCG 1 cut(s) 296
BsiHKAI GWGCWC 2 cut(s) 463, 471
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 2 cut(s) 296, 482
BslFI GGGAC 2 cut(s) 212, 399
BslI CCNNNNNNNGG 2 cut(s) 224, 593
BsmAI GTCTC 1 cut(s) 293
BsmFI GGGAC 2 cut(s) 212, 399
BsoBI CYCGRG 1 cut(s) 464
Bsp1286I GDGCHC 2 cut(s) 463, 471
Bsp143I GATC 2 cut(s) 271, 289
BspACI CCGC 8 cut(s) 117, 195, 519, 522, 540, 561, 564, 597
BspCNI CTCAG 3 cut(s) 153, 421, 580
BspFNI CGCG 1 cut(s) 334
BspPI GGATC 1 cut(s) 279
BssECI CCNNGG 2 cut(s) 179, 223
BssMI GATC 2 cut(s) 271, 289
BssNI GRCGYC 1 cut(s) 250
BssT1I CCWWGG 2 cut(s) 179, 223
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 4 cut(s) 52, 236, 421, 443
Bst6I CTCTTC 1 cut(s) 91
BstACI GRCGYC 1 cut(s) 250
BstDEI CTNAG 4 cut(s) 105, 140, 408, 588
BstF5I GGATG 1 cut(s) 386
BstFNI CGCG 1 cut(s) 334
BstHHI GCGC 1 cut(s) 334
BstKTI GATC 2 cut(s) 274, 292
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 2 cut(s) 271, 289
BstMCI CGRYCG 1 cut(s) 296
BstMWI GCNNNNNNNGC 3 cut(s) 329, 487, 617
BstNI CCWGG 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 267
BstSFI CTRYAG 1 cut(s) 420
BstUI CGCG 1 cut(s) 334
BstV1I GCAGC 3 cut(s) 125, 310, 587
BstV2I GAAGAC 2 cut(s) 275, 537
Bsu36I CCTNAGG 2 cut(s) 105, 588
BtgZI GCGATG 1 cut(s) 341
BtsCI GGATG 1 cut(s) 386
BtsI GCAGTG 1 cut(s) 574
BtsIMutI CAGTG 2 cut(s) 448, 574
CaiI CAGNNNCTG 1 cut(s) 119
CfoI GCGC 1 cut(s) 334
CseI GACGC 1 cut(s) 258
CviAII CATG 1 cut(s) 74
DdeI CTNAG 4 cut(s) 105, 140, 408, 588
DpnI GATC 2 cut(s) 273, 291
DpnII GATC 2 cut(s) 271, 289
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Ecl136II GAGCTC 2 cut(s) 461, 469
Eco130I CCWWGG 2 cut(s) 179, 223
Eco24I GRGCYC 2 cut(s) 463, 471
Eco53kI GAGCTC 2 cut(s) 461, 469
Eco81I CCTNAGG 2 cut(s) 105, 588
Eco88I CYCGRG 1 cut(s) 464
EcoICRI GAGCTC 2 cut(s) 461, 469
EcoRII CCWGG 1 cut(s) 267
EcoT14I CCWWGG 2 cut(s) 179, 223
EcoT38I GRGCYC 2 cut(s) 463, 471
ErhI CCWWGG 2 cut(s) 179, 223
FaeI CATG 1 cut(s) 77
FaiI YATR 6 cut(s) 17, 29, 55, 75, 265, 479
FaqI GGGAC 2 cut(s) 212, 399
FatI CATG 1 cut(s) 73
FauI CCCGC 1 cut(s) 188
Fnu4HI GCNGC 8 cut(s) 114, 117, 324, 520, 562, 565, 598, 601
FokI GGATG 1 cut(s) 393
FriOI GRGCYC 2 cut(s) 463, 471
Fsp4HI GCNGC 8 cut(s) 114, 117, 324, 520, 562, 565, 598, 601
FspBI CTAG 2 cut(s) 612, 621
GlaI GCGC 1 cut(s) 333
GluI GCNGC 8 cut(s) 114, 117, 324, 520, 562, 565, 598, 601
HapII CCGG 2 cut(s) 296, 482
HgaI GACGC 1 cut(s) 258
HhaI GCGC 1 cut(s) 334
Hin1I GRCGYC 1 cut(s) 250
Hin1II CATG 1 cut(s) 77
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HinfI GANTC 2 cut(s) 136, 301
HpaII CCGG 2 cut(s) 296, 482
HphI GGTGA 6 cut(s) 383, 404, 464, 536, 557, 584
Hpy188I TCNGA 3 cut(s) 135, 175, 306
Hpy188III TCNNGA 4 cut(s) 94, 287, 464, 587
Hpy99I CGWCG 2 cut(s) 236, 252
HpyAV CCTTC 2 cut(s) 184, 569
HpyCH4III ACNGT 4 cut(s) 52, 236, 421, 443
HpyCH4V TGCA 1 cut(s) 490
HpyF10VI GCNNNNNNNGC 3 cut(s) 329, 487, 617
HpyF3I CTNAG 4 cut(s) 105, 140, 408, 588
Hsp92I GRCGYC 1 cut(s) 250
Hsp92II CATG 1 cut(s) 77
HspAI GCGC 1 cut(s) 332
Kzo9I GATC 2 cut(s) 271, 289
LmnI GCTCC 1 cut(s) 458
LpnPI CCDG 6 cut(s) 254, 281, 309, 395, 495, 600
Lsp1109I GCAGC 3 cut(s) 125, 310, 587
LweI GCATC 1 cut(s) 14
MaeI CTAG 2 cut(s) 612, 621
MaeIII GTNAC 4 cut(s) 121, 429, 443, 524
MalI GATC 2 cut(s) 273, 291
MboI GATC 2 cut(s) 271, 289
MboII GAAGA 4 cut(s) 78, 275, 488, 542
MhlI GDGCHC 2 cut(s) 463, 471
MluCI AATT 8 cut(s) 12, 24, 35, 127, 238, 259, 434, 485
MlyI GAGTC 2 cut(s) 130, 295
MnlI CCTC 7 cut(s) 142, 214, 225, 228, 352, 583, 610
MseI TTAA 1 cut(s) 21
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 2 cut(s) 296, 482
MspR9I CCNGG 1 cut(s) 269
MvaI CCWGG 1 cut(s) 269
MvnI CGCG 1 cut(s) 334
MwoI GCNNNNNNNGC 3 cut(s) 329, 487, 617
NdeII GATC 2 cut(s) 271, 289
NlaIII CATG 1 cut(s) 77
NmuCI GTSAC 2 cut(s) 443, 524
PaeR7I CTCGAG 1 cut(s) 464
PkrI GCNGC 8 cut(s) 115, 118, 325, 521, 563, 566, 599, 602
PleI GAGTC 2 cut(s) 130, 295
PpsI GAGTC 2 cut(s) 130, 295
Psp124BI GAGCTC 2 cut(s) 463, 471
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PstNI CAGNNNCTG 1 cut(s) 119
SacI GAGCTC 2 cut(s) 463, 471
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 8 cut(s) 114, 117, 324, 520, 562, 565, 598, 601
Sau3AI GATC 2 cut(s) 271, 289
SchI GAGTC 2 cut(s) 130, 295
ScrFI CCNGG 1 cut(s) 269
SduI GDGCHC 2 cut(s) 463, 471
SfaNI GCATC 1 cut(s) 14
SfcI CTRYAG 1 cut(s) 420
Sfr274I CTCGAG 1 cut(s) 464
SlaI CTCGAG 1 cut(s) 464
SmlI CTYRAG 2 cut(s) 92, 464
SmoI CTYRAG 2 cut(s) 92, 464
Sse9I AATT 8 cut(s) 12, 24, 35, 127, 238, 259, 434, 485
SsiI CCGC 8 cut(s) 117, 195, 519, 522, 540, 561, 564, 597
SspMI CTAG 2 cut(s) 612, 621
SstI GAGCTC 2 cut(s) 463, 471
StyD4I CCNGG 1 cut(s) 267
StyI CCWWGG 2 cut(s) 179, 223
TaaI ACNGT 4 cut(s) 52, 236, 421, 443
TaqI TCGA 4 cut(s) 247, 292, 465, 508
TasI AATT 8 cut(s) 12, 24, 35, 127, 238, 259, 434, 485
TauI GCSGC 5 cut(s) 119, 522, 564, 567, 600
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 2 cut(s) 448, 574
TseFI GTSAC 2 cut(s) 443, 524
TseI GCWGC 3 cut(s) 113, 323, 600
Tsp45I GTSAC 2 cut(s) 443, 524
TspRI CASTG 2 cut(s) 448, 574
XapI RAATTY 2 cut(s) 127, 259
XcmI CCANNNNNNNNNTGG 1 cut(s) 164
XhoI CTCGAG 1 cut(s) 464
XspI CTAG 2 cut(s) 612, 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.