RLG00000030087

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000981
Physical Location & Seq
Forward (+)
54981713 .. 54982164
452 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030087

Sequence Viewer

Length: 363 bp
ATGATGGCCATCTTGGCTATGATGGCGCGGGGCTCCTTGCCTTCCATCTTGTCAGTGACAAGCGAAGCAGAGGCTTTTGATGATAGGGACGTTGTTGGTTTGGGTTTTTGGTGTTTCCCTGCCGCCAAAGGCAGTAGCAGATCCATGGCAGAGGATTTCTGTAGTGGTGGCGGAGACTGGCTGATCCCGGATTGGTTGGGTCGCTCTTTTGTCTCAGACAATGGCCATTTGGATTCTAACTCGATTGTTGCTACCGAGGATGAAGTTGGTGGATCTGGCATGCTTGATGGCAATGCTTGGTTCACTTGTTGCAACTCTGTTCCCTCTTGTGGTGAAGGGGTGAATGGTGCTAGCCTATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.48

Weight (kDa)

4.05

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 28
AciI CCGC 3 cut(s) 28, 123, 171
AclWI GGATC 3 cut(s) 135, 178, 280
AcoI YGGCCR 2 cut(s) 6, 223
AfiI CCNNNNNNNGG 1 cut(s) 329
Alw26I GTCTC 2 cut(s) 168, 217
AlwI GGATC 3 cut(s) 135, 178, 280
AoxI GGCC 2 cut(s) 6, 223
AspLEI GCGC 1 cut(s) 28
AsuC2I CCSGG 1 cut(s) 188
AsuHPI GGTGA 2 cut(s) 344, 352
AsuNHI GCTAGC 1 cut(s) 350
BalI TGGCCA 2 cut(s) 8, 225
BanII GRGCYC 1 cut(s) 35
BccI CCATC 4 cut(s) 16, 17, 53, 281
BcnI CCSGG 1 cut(s) 188
BcoDI GTCTC 2 cut(s) 168, 217
BfaI CTAG 1 cut(s) 351
BfmI CTRYAG 1 cut(s) 160
BglI GCCNNNNNGGC 1 cut(s) 14
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
Bme1390I CCNGG 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 188
BmtI GCTAGC 1 cut(s) 354
BpuMI CCSGG 1 cut(s) 188
BsaBI GATNNNNATC 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 144, 255
Bsc4I CCNNNNNNNGG 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 182
Bse3DI GCAATG 1 cut(s) 298
Bse8I GATNNNNATC 1 cut(s) 8
BseDI CCNNGG 2 cut(s) 144, 255
BseGI GGATG 1 cut(s) 265
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 329
BseMI GCAATG 1 cut(s) 298
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 28
BshFI GGCC 2 cut(s) 8, 225
BsiSI CCGG 1 cut(s) 188
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 1 cut(s) 329
BsmAI GTCTC 2 cut(s) 168, 217
BsmFI GGGAC 1 cut(s) 101
BsnI GGCC 2 cut(s) 8, 225
Bsp1286I GDGCHC 1 cut(s) 35
Bsp143I GATC 3 cut(s) 140, 183, 272
Bsp19I CCATGG 1 cut(s) 144
BspACI CCGC 3 cut(s) 28, 123, 171
BspANI GGCC 2 cut(s) 8, 225
BspCNI CTCAG 1 cut(s) 227
BspFNI CGCG 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 34
BspOI GCTAGC 1 cut(s) 354
BspPI GGATC 3 cut(s) 135, 178, 280
BsrDI GCAATG 1 cut(s) 298
BsrI ACTGG 1 cut(s) 182
BssECI CCNNGG 2 cut(s) 144, 255
BssMI GATC 3 cut(s) 140, 183, 272
BssT1I CCWWGG 1 cut(s) 144
BstC8I GCNNGC 2 cut(s) 281, 352
BstDEI CTNAG 1 cut(s) 214
BstDSI CCRYGG 1 cut(s) 144
BstF5I GGATG 1 cut(s) 265
BstFNI CGCG 1 cut(s) 28
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 3 cut(s) 143, 186, 275
BstMAI GTCTC 2 cut(s) 168, 217
BstMBI GATC 3 cut(s) 140, 183, 272
BstMWI GCNNNNNNNGC 2 cut(s) 14, 23
BstNSI RCATGY 1 cut(s) 283
BstSCI CCNGG 1 cut(s) 186
BstSFI CTRYAG 1 cut(s) 160
BstUI CGCG 1 cut(s) 28
BstX2I RGATCY 2 cut(s) 140, 272
BstYI RGATCY 2 cut(s) 140, 272
BsuRI GGCC 2 cut(s) 8, 225
BtgI CCRYGG 1 cut(s) 144
BtsCI GGATG 1 cut(s) 265
BtsIMutI CAGTG 1 cut(s) 60
Cac8I GCNNGC 2 cut(s) 281, 352
CfoI GCGC 1 cut(s) 28
CviAII CATG 2 cut(s) 145, 280
CviJI RGCY 7 cut(s) 8, 17, 33, 74, 181, 225, 354
CviKI_1 RGCY 7 cut(s) 8, 17, 33, 74, 181, 225, 354
DdeI CTNAG 1 cut(s) 214
DpnI GATC 3 cut(s) 142, 185, 274
DpnII GATC 3 cut(s) 140, 183, 272
EaeI YGGCCR 2 cut(s) 6, 223
EciI GGCGGA 1 cut(s) 186
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 35
EcoT14I CCWWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 144
FaeI CATG 2 cut(s) 148, 283
FaiI YATR 4 cut(s) 20, 146, 281, 358
FaqI GGGAC 1 cut(s) 101
FatI CATG 2 cut(s) 144, 279
FauI CCCGC 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 1 cut(s) 272
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 1 cut(s) 351
GlaI GCGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 123
HaeIII GGCC 2 cut(s) 8, 225
HapII CCGG 1 cut(s) 188
HhaI GCGC 1 cut(s) 28
Hin1II CATG 2 cut(s) 148, 283
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HinfI GANTC 1 cut(s) 233
HpaII CCGG 1 cut(s) 188
HphI GGTGA 2 cut(s) 344, 352
Hpy166II GTNNAC 1 cut(s) 303
Hpy188I TCNGA 1 cut(s) 217
Hpy8I GTNNAC 1 cut(s) 303
HpyAV CCTTC 2 cut(s) 51, 329
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 1 cut(s) 312
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 23
HpyF3I CTNAG 1 cut(s) 214
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 2 cut(s) 148, 283
HspAI GCGC 1 cut(s) 26
Kzo9I GATC 3 cut(s) 140, 183, 272
LmnI GCTCC 1 cut(s) 38
LpnPI CCDG 4 cut(s) 132, 163, 201, 261
MaeI CTAG 1 cut(s) 351
MaeII ACGT 1 cut(s) 90
MaeIII GTNAC 1 cut(s) 55
MalI GATC 3 cut(s) 142, 185, 274
MboI GATC 3 cut(s) 140, 183, 272
MflI RGATCY 2 cut(s) 140, 272
MhlI GDGCHC 1 cut(s) 35
MlsI TGGCCA 2 cut(s) 8, 225
MluNI TGGCCA 2 cut(s) 8, 225
MnlI CCTC 4 cut(s) 64, 145, 250, 334
Mox20I TGGCCA 2 cut(s) 8, 225
MscI TGGCCA 2 cut(s) 8, 225
Msp20I TGGCCA 2 cut(s) 8, 225
MspI CCGG 1 cut(s) 188
MspR9I CCNGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 28
MwoI GCNNNNNNNGC 2 cut(s) 14, 23
NciI CCSGG 1 cut(s) 188
NcoI CCATGG 1 cut(s) 144
NdeII GATC 3 cut(s) 140, 183, 272
NheI GCTAGC 1 cut(s) 350
NlaIII CATG 2 cut(s) 148, 283
NlaIV GGNNCC 1 cut(s) 34
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 283
PaeI GCATGC 1 cut(s) 283
PfeI GAWTC 1 cut(s) 233
PfoI TCCNGGA 1 cut(s) 186
PkrI GCNGC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 34
PsuI RGATCY 2 cut(s) 140, 272
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 3 cut(s) 140, 183, 272
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 1 cut(s) 35
SetI ASST 1 cut(s) 93
SfcI CTRYAG 1 cut(s) 160
SphI GCATGC 1 cut(s) 283
SsiI CCGC 3 cut(s) 28, 123, 171
SspMI CTAG 1 cut(s) 351
StyD4I CCNGG 1 cut(s) 186
StyI CCWWGG 1 cut(s) 144
TaiI ACGT 1 cut(s) 93
TaqI TCGA 1 cut(s) 242
TauI GCSGC 1 cut(s) 125
TfiI GAWTC 1 cut(s) 233
TscAI CASTG 1 cut(s) 60
TseFI GTSAC 1 cut(s) 55
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 276
TspRI CASTG 1 cut(s) 60
XceI RCATGY 1 cut(s) 283
XspI CTAG 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.