FvH4_1g26811

Exopolygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000434
Physical Location & Seq
Forward (+)
18664585 .. 18665724
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g26811.t1

Sequence Viewer

Length: 888 bp
ATGGATCTCAAACTTTTCGTGAGTATGTTGTCGATACTTATGTACTTTTACTCTACTCATGCAAGAAGACCAAGAGAGCTTTTAACTGTTTGTAGCTTTGACGTGACTAATGTGAAATATGGTGCGAAACCCAATTCTGATATTATTAAGGTTTTAGCAAATGCATGGAAAGATGCATGCGCATCAACATCAGCAAGTACAGTTCTTGTTCCAAAGGGAACATACAAACTGAAAGAAGCAAGCTTTAAGGGTCCATGCAAGGCTCCTATTGAGCTTCAAGTGAAAGGCACATTGCAGGCGCCACAAGACAGCGCTCAACTGTCAAAACCAGATACTTGGATTGAATTTTCCTATCTTGACAATTTCACACTATCGGGTGGTGGAACCTTTGATGGCCAAGGACATAAAGCTTGGTTGGCCAATGATTGCCACAAAAACTCAAAATGTACATCTATTGCCATTAATATGAGGTTCTACTCTGTCAAAAACTCATTAGTTAAGGATGTAACTTCACTTAATAGCAAGAACTTCCATGTCAACATAATAGGGTGCGAGCGACTAACATTCCAGCATTTCATAGTAACTGCACCAGGAAATAGCACTAACACAGATGGAATACATATAGGGCGCTCGATTGGGGTTAACATTACTGATGCAAACATCAAAACCGGAGACGATTGCATTTCGATTGGTGATGGCACCAAACAACTAACAATAACTAATGTAACTTGTGGATCAGGTCATGGAATAAGTATTGGAAGTCTTGGAAAGTACCAGAAAGAAGATCCTGTTAGTGGAATCAATATCAGCAACTGTACTCTTAGTGACACGTCCAATGGTGTAAGAATCAAGACATGGCCTAATTCTCCTTCACCTGGCACTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

296

Amino Acids

31.85

Weight (kDa)

8.88

Isoelectric Point (pI)

33.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 60 - 288 1.1e-72 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07820 AT3G07830 AT3G07840 AT5G48140
fragaria_vesca FvH4_1g26811 FvH4_2g02350 FvH4_6g41380 FvH4_6g41380 FvH4_6g41380 FvH4_6g41430 FvH4_6g41740 FvH4_6g43060 FvH4_7g02910
malus_domestica MD00G1117700.v1.1 MD00G1117800.v1.1 MD00G1117900.v1.1 MD09G1120000.v1.1 MD09G1120100.v1.1 MD09G1120200.v1.1 MD09G1120300.v1.1 MD12G1142000.v1.1 MD13G1218300.v1.1 MD13G1220100.v1.1 MD13G1220200.v1.1 MD16G1223300.v1.1 MD16G1223500.v1.1 MD16G1223600.v1.1 MD17G1110800.v1.1
prunus_persica Prupe.1G044900_v2.0.a1 Prupe.1G045000_v2.0.a1 Prupe.1G167700_v2.0.a1 Prupe.2G005600_v2.0.a1 Prupe.2G005700_v2.0.a1 Prupe.2G008600_v2.0.a1 Prupe.2G009200_v2.0.a1 Prupe.2G009300_v2.0.a1 Prupe.2G009400_v2.0.a1 Prupe.3G109100_v2.0.a1 Prupe.3G109200_v2.0.a1 Prupe.3G109400_v2.0.a1 Prupe.3G109500_v2.0.a1 Prupe.3G109700_v2.0.a1 Prupe.3G203300_v2.0.a1 Prupe.3G203600_v2.0.a1 Prupe.3G203900_v2.0.a1 Prupe.3G204000_v2.0.a1 Prupe.3G204100_v2.0.a1 Prupe.3G204200_v2.0.a1
pyrus_communis pycom09g04480 pycom09g04490 pycom09g04500 pycom12g13680
rosa_chinensis RchiOBHm_Chr1g0323871 RchiOBHm_Chr2g0156921 RchiOBHm_Chr2g0159061 RchiOBHm_Chr6g0246271 RchiOBHm_Chr6g0246281
rosa_laevigata RLG00000015266 RLG00000020954 RLG00000021134 RLG00000030246 RLG00000030250 RLG00000030295
rosa_multiflora Rmu_co8098394.1_g000001 Rmu_co8404671.1_g000001 Rmu_sc0000507.1_g000021 Rmu_sc0001066.1_g000011 Rmu_sc0001066.1_g000015 Rmu_sc0009451.1_g000001 Rmu_ssc0000408.1_g000005
rosa_roxburghii Rroxscaffold_2G00090810 Rroxscaffold_2G00092580 Rroxscaffold_4G00326280 Rroxscaffold_7G00214720
rosa_rugosa Rorug01G0040400 Rorug02G0457200 Rorug05G0520000
rosa_samantha Rh1AG057700 Rh1BG048800 Rh1CG059100 Rh1DG063000 Rh2AG522900 Rh2BG536200 Rh2BG553200 Rh2CG507800 Rh2DG545200 Rh6AG034100 Rh6BG029300 Rh6DG028700
rosa_wichuraiana Rw0G023110 Rw1G004930 Rw2G043170 Rw2G044730 Rw6G002760 Rw6G002920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 181
AccB1I GGYRCC 2 cut(s) 298, 698
AclWI GGATC 3 cut(s) 12, 742, 779
AcoI YGGCCR 2 cut(s) 394, 417
AcsI RAATTY 1 cut(s) 344
AcyI GRCGYC 1 cut(s) 299
AfaI GTAC 5 cut(s) 44, 199, 448, 773, 817
AfeI AGCGCT 1 cut(s) 313
AfiI CCNNNNNNNGG 2 cut(s) 794, 875
AflIII ACRYGT 1 cut(s) 828
AgsI TTSAA 2 cut(s) 278, 344
AjiI CACGTC 2 cut(s) 103, 831
AjnI CCWGG 2 cut(s) 589, 874
AluBI AGCT 5 cut(s) 79, 96, 243, 274, 410
AluI AGCT 5 cut(s) 79, 96, 243, 274, 410
Alw26I GTCTC 1 cut(s) 666
AlwI GGATC 3 cut(s) 12, 742, 779
AlwNI CAGNNNCTG 1 cut(s) 813
Aor51HI AGCGCT 1 cut(s) 313
AoxI GGCC 3 cut(s) 394, 417, 857
ApoI RAATTY 1 cut(s) 344
AseI ATTAAT 1 cut(s) 462
AspLEI GCGC 4 cut(s) 182, 301, 314, 630
AspS9I GGNCC 1 cut(s) 251
AsuHPI GGTGA 2 cut(s) 704, 864
AvaII GGWCC 1 cut(s) 251
BaeI ACNNNNGTAYC 2 cut(s) 26, 59
BalI TGGCCA 2 cut(s) 396, 419
BanI GGYRCC 2 cut(s) 298, 698
BbsI GAAGAC 1 cut(s) 73
BccI CCATC 3 cut(s) 386, 605, 689
BciT130I CCWGG 2 cut(s) 591, 876
BcoDI GTCTC 1 cut(s) 666
BfoI RGCGCY 3 cut(s) 302, 315, 631
Bme1390I CCNGG 2 cut(s) 591, 876
Bme18I GGWCC 1 cut(s) 251
BmgBI CACGTC 2 cut(s) 103, 831
BmgT120I GGNCC 1 cut(s) 251
BmiI GGNNCC 5 cut(s) 252, 264, 300, 385, 700
BmrFI CCNGG 2 cut(s) 591, 876
BmsI GCATC 3 cut(s) 163, 191, 643
BpiI GAAGAC 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 299
BsaJI CCNNGG 1 cut(s) 397
BsaWI WCCGGW 1 cut(s) 668
Bsc4I CCNNNNNNNGG 2 cut(s) 794, 875
Bse3DI GCAATG 1 cut(s) 290
BseBI CCWGG 2 cut(s) 591, 876
BseDI CCNNGG 1 cut(s) 397
BseGI GGATG 1 cut(s) 508
BseLI CCNNNNNNNGG 2 cut(s) 794, 875
BseMI GCAATG 1 cut(s) 290
BsgI GTGCAG 1 cut(s) 570
BshFI GGCC 3 cut(s) 396, 419, 859
BshNI GGYRCC 2 cut(s) 298, 698
BsiSI CCGG 1 cut(s) 669
BslI CCNNNNNNNGG 2 cut(s) 794, 875
BsmAI GTCTC 1 cut(s) 666
BsmBI CGTCTC 1 cut(s) 666
BsnI GGCC 3 cut(s) 396, 419, 859
Bsp1407I TGTACA 1 cut(s) 446
Bsp143I GATC 3 cut(s) 4, 734, 784
BspANI GGCC 3 cut(s) 396, 419, 859
BspLI GGNNCC 5 cut(s) 252, 264, 300, 385, 700
BspPI GGATC 3 cut(s) 12, 742, 779
BspT107I GGYRCC 2 cut(s) 298, 698
BsrDI GCAATG 1 cut(s) 290
BsrGI TGTACA 1 cut(s) 446
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 3 cut(s) 4, 734, 784
BssNI GRCGYC 1 cut(s) 299
BssT1I CCWWGG 1 cut(s) 397
Bst2UI CCWGG 2 cut(s) 591, 876
Bst4CI ACNGT 4 cut(s) 88, 202, 321, 815
BstACI GRCGYC 1 cut(s) 299
BstAUI TGTACA 1 cut(s) 446
BstC8I GCNNGC 4 cut(s) 178, 241, 297, 554
BstDEI CTNAG 1 cut(s) 821
BstF5I GGATG 1 cut(s) 508
BstH2I RGCGCY 3 cut(s) 302, 315, 631
BstHHI GCGC 4 cut(s) 182, 301, 314, 630
BstKTI GATC 3 cut(s) 7, 737, 787
BstMAI GTCTC 1 cut(s) 666
BstMBI GATC 3 cut(s) 4, 734, 784
BstMWI GCNNNNNNNGC 1 cut(s) 416
BstNI CCWGG 2 cut(s) 591, 876
BstNSI RCATGY 1 cut(s) 180
BstSCI CCNGG 2 cut(s) 589, 874
BstV2I GAAGAC 1 cut(s) 73
BstX2I RGATCY 2 cut(s) 4, 784
BstXI CCANNNNNNTGG 1 cut(s) 336
BstYI RGATCY 2 cut(s) 4, 784
BsuRI GGCC 3 cut(s) 396, 419, 859
BtrI CACGTC 2 cut(s) 103, 831
BtsCI GGATG 1 cut(s) 508
Cac8I GCNNGC 4 cut(s) 178, 241, 297, 554
CaiI CAGNNNCTG 1 cut(s) 813
CfoI GCGC 4 cut(s) 182, 301, 314, 630
Cfr13I GGNCC 1 cut(s) 251
Csp6I GTAC 5 cut(s) 43, 198, 447, 772, 816
CviAII CATG 7 cut(s) 59, 165, 177, 255, 533, 743, 855
CviJI RGCY 9 cut(s) 79, 96, 243, 263, 274, 396, 410, 419, 859
CviKI_1 RGCY 9 cut(s) 79, 96, 243, 263, 274, 396, 410, 419, 859
CviQI GTAC 5 cut(s) 43, 198, 447, 772, 816
DdeI CTNAG 1 cut(s) 821
DinI GGCGCC 1 cut(s) 300
DpnI GATC 3 cut(s) 6, 736, 786
DpnII GATC 3 cut(s) 4, 734, 784
EaeI YGGCCR 2 cut(s) 394, 417
Eco130I CCWWGG 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 251
Eco47III AGCGCT 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 589, 874
EcoT14I CCWWGG 1 cut(s) 397
EcoT22I ATGCAT 2 cut(s) 166, 178
EgeI GGCGCC 1 cut(s) 300
EheI GGCGCC 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 397
Esp3I CGTCTC 1 cut(s) 666
FaeI CATG 7 cut(s) 62, 168, 180, 258, 536, 746, 858
FatI CATG 7 cut(s) 58, 164, 176, 254, 532, 742, 854
FokI GGATG 1 cut(s) 515
FspAI RTGCGCAY 1 cut(s) 181
FspI TGCGCA 1 cut(s) 181
GlaI GCGC 4 cut(s) 181, 300, 313, 629
HaeII RGCGCY 3 cut(s) 302, 315, 631
HaeIII GGCC 3 cut(s) 396, 419, 859
HapII CCGG 1 cut(s) 669
HhaI GCGC 4 cut(s) 182, 301, 314, 630
Hin1I GRCGYC 1 cut(s) 299
Hin1II CATG 7 cut(s) 62, 168, 180, 258, 536, 746, 858
Hin6I GCGC 4 cut(s) 180, 299, 312, 628
HinP1I GCGC 4 cut(s) 180, 299, 312, 628
HincII GTYRAC 2 cut(s) 538, 643
HindII GTYRAC 2 cut(s) 538, 643
HindIII AAGCTT 2 cut(s) 241, 408
HinfI GANTC 2 cut(s) 798, 846
HpaI GTTAAC 1 cut(s) 643
HpaII CCGG 1 cut(s) 669
HphI GGTGA 2 cut(s) 704, 864
Hpy166II GTNNAC 2 cut(s) 538, 643
Hpy188I TCNGA 1 cut(s) 139
Hpy188III TCNNGA 3 cut(s) 19, 356, 850
Hpy8I GTNNAC 2 cut(s) 538, 643
HpyAV CCTTC 1 cut(s) 879
HpyCH4III ACNGT 4 cut(s) 88, 202, 321, 815
HpyCH4IV ACGT 2 cut(s) 102, 830
HpyCH4V TGCA 8 cut(s) 62, 164, 176, 258, 295, 587, 656, 681
HpyF10VI GCNNNNNNNGC 1 cut(s) 416
HpyF3I CTNAG 1 cut(s) 821
HpySE526I ACGT 2 cut(s) 102, 830
Hsp92I GRCGYC 1 cut(s) 299
Hsp92II CATG 7 cut(s) 62, 168, 180, 258, 536, 746, 858
HspAI GCGC 4 cut(s) 180, 299, 312, 628
KasI GGCGCC 1 cut(s) 298
KspAI GTTAAC 1 cut(s) 643
Kzo9I GATC 3 cut(s) 4, 734, 784
LmnI GCTCC 1 cut(s) 268
LweI GCATC 3 cut(s) 163, 191, 643
MaeII ACGT 2 cut(s) 102, 830
MaeIII GTNAC 5 cut(s) 103, 505, 580, 724, 824
MalI GATC 3 cut(s) 6, 736, 786
MboI GATC 3 cut(s) 4, 734, 784
MboII GAAGA 2 cut(s) 78, 794
MflI RGATCY 2 cut(s) 4, 784
MlsI TGGCCA 2 cut(s) 396, 419
MluCI AATT 4 cut(s) 133, 344, 361, 862
MluNI TGGCCA 2 cut(s) 396, 419
Mly113I GGCGCC 1 cut(s) 299
MnlI CCTC 1 cut(s) 462
Mox20I TGGCCA 2 cut(s) 396, 419
Mph1103I ATGCAT 2 cut(s) 166, 178
MscI TGGCCA 2 cut(s) 396, 419
MseI TTAA 7 cut(s) 83, 147, 246, 462, 498, 516, 642
MslI CAYNNNNRTG 1 cut(s) 464
Msp20I TGGCCA 2 cut(s) 396, 419
MspI CCGG 1 cut(s) 669
MspR9I CCNGG 2 cut(s) 591, 876
MvaI CCWGG 2 cut(s) 591, 876
MwoI GCNNNNNNNGC 1 cut(s) 416
NarI GGCGCC 1 cut(s) 299
NdeII GATC 3 cut(s) 4, 734, 784
NlaIII CATG 7 cut(s) 62, 168, 180, 258, 536, 746, 858
NlaIV GGNNCC 5 cut(s) 252, 264, 300, 385, 700
NmuCI GTSAC 2 cut(s) 103, 824
NsbI TGCGCA 1 cut(s) 181
NsiI ATGCAT 2 cut(s) 166, 178
NspI RCATGY 1 cut(s) 180
PaeI GCATGC 1 cut(s) 180
PfeI GAWTC 2 cut(s) 798, 846
PluTI GGCGCC 1 cut(s) 302
PshBI ATTAAT 1 cut(s) 462
Psp6I CCWGG 2 cut(s) 589, 874
PspGI CCWGG 2 cut(s) 589, 874
PspN4I GGNNCC 5 cut(s) 252, 264, 300, 385, 700
PspPI GGNCC 1 cut(s) 251
PstNI CAGNNNCTG 1 cut(s) 813
PsuI RGATCY 2 cut(s) 4, 784
RsaI GTAC 5 cut(s) 44, 199, 448, 773, 817
RsaNI GTAC 5 cut(s) 43, 198, 447, 772, 816
RseI CAYNNNNRTG 1 cut(s) 464
SaqAI TTAA 7 cut(s) 83, 147, 246, 462, 498, 516, 642
Sau3AI GATC 3 cut(s) 4, 734, 784
Sau96I GGNCC 1 cut(s) 251
ScrFI CCNGG 2 cut(s) 591, 876
SfaNI GCATC 3 cut(s) 163, 191, 643
SfoI GGCGCC 1 cut(s) 300
SinI GGWCC 1 cut(s) 251
SmiMI CAYNNNNRTG 1 cut(s) 464
SphI GCATGC 1 cut(s) 180
Sse9I AATT 4 cut(s) 133, 344, 361, 862
SspDI GGCGCC 1 cut(s) 298
StyD4I CCNGG 2 cut(s) 589, 874
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 4 cut(s) 88, 202, 321, 815
TaiI ACGT 2 cut(s) 105, 833
TaqI TCGA 3 cut(s) 32, 632, 686
TasI AATT 4 cut(s) 133, 344, 361, 862
TatI WGTACW 4 cut(s) 42, 197, 446, 815
TfiI GAWTC 2 cut(s) 798, 846
Tru1I TTAA 7 cut(s) 83, 147, 246, 462, 498, 516, 642
Tru9I TTAA 7 cut(s) 83, 147, 246, 462, 498, 516, 642
TseFI GTSAC 2 cut(s) 103, 824
Tsp45I GTSAC 2 cut(s) 103, 824
TspDTI ATGAA 1 cut(s) 565
VpaK11BI GGWCC 1 cut(s) 251
VspI ATTAAT 1 cut(s) 462
XapI RAATTY 1 cut(s) 344
XceI RCATGY 1 cut(s) 180
Zsp2I ATGCAT 2 cut(s) 166, 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.