Rmu_co8098394.1_g000001

Exopolygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8098394.1
OG0000434
Physical Location & Seq
Reverse (-)
2 .. 455
454 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8098394.1_g000001.1.cds

Sequence Viewer

Length: 454 bp
atggcgatattcatgttcttattgttagcagctacagctaaagcccaaccctgtgtagtctttgacgtgacgagtgcaaaatatggtggaaaaactaactatgatattacagactcctcagcacaagcttggacagatgcttgtgcttctgtatggtcgagtaaactcgttgttccaagcggcacatattggttaagaggagcaacttttataggtccttgcaaggctcctatcaaggtgcaaatccaaggaaagttgaaagatcccgaagatggccaccaactcgtgaactcggatttttgggttgcttttcggtacattgacaggctctacttatcaggtggtggaacttttgatggccaaggagcccttggttggaatacttatcgtgctattaacgtgaggttcgactacatctccaactccataattcaggacataacttcccttaaca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

151

Amino Acids

16.59

Weight (kDa)

7.66

Isoelectric Point (pI)

22.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07820 AT3G07830 AT3G07840 AT5G48140
fragaria_vesca FvH4_1g26811 FvH4_2g02350 FvH4_6g41380 FvH4_6g41380 FvH4_6g41380 FvH4_6g41430 FvH4_6g41740 FvH4_6g43060 FvH4_7g02910
malus_domestica MD00G1117700.v1.1 MD00G1117800.v1.1 MD00G1117900.v1.1 MD09G1120000.v1.1 MD09G1120100.v1.1 MD09G1120200.v1.1 MD09G1120300.v1.1 MD12G1142000.v1.1 MD13G1218300.v1.1 MD13G1220100.v1.1 MD13G1220200.v1.1 MD16G1223300.v1.1 MD16G1223500.v1.1 MD16G1223600.v1.1 MD17G1110800.v1.1
prunus_persica Prupe.1G044900_v2.0.a1 Prupe.1G045000_v2.0.a1 Prupe.1G167700_v2.0.a1 Prupe.2G005600_v2.0.a1 Prupe.2G005700_v2.0.a1 Prupe.2G008600_v2.0.a1 Prupe.2G009200_v2.0.a1 Prupe.2G009300_v2.0.a1 Prupe.2G009400_v2.0.a1 Prupe.3G109100_v2.0.a1 Prupe.3G109200_v2.0.a1 Prupe.3G109400_v2.0.a1 Prupe.3G109500_v2.0.a1 Prupe.3G109700_v2.0.a1 Prupe.3G203300_v2.0.a1 Prupe.3G203600_v2.0.a1 Prupe.3G203900_v2.0.a1 Prupe.3G204000_v2.0.a1 Prupe.3G204100_v2.0.a1 Prupe.3G204200_v2.0.a1
pyrus_communis pycom09g04480 pycom09g04490 pycom09g04500 pycom12g13680
rosa_chinensis RchiOBHm_Chr1g0323871 RchiOBHm_Chr2g0156921 RchiOBHm_Chr2g0159061 RchiOBHm_Chr6g0246271 RchiOBHm_Chr6g0246281
rosa_laevigata RLG00000015266 RLG00000020954 RLG00000021134 RLG00000030246 RLG00000030250 RLG00000030295
rosa_multiflora Rmu_co8098394.1_g000001 Rmu_co8404671.1_g000001 Rmu_sc0000507.1_g000021 Rmu_sc0001066.1_g000011 Rmu_sc0001066.1_g000015 Rmu_sc0009451.1_g000001 Rmu_ssc0000408.1_g000005
rosa_roxburghii Rroxscaffold_2G00090810 Rroxscaffold_2G00092580 Rroxscaffold_4G00326280 Rroxscaffold_7G00214720
rosa_rugosa Rorug01G0040400 Rorug02G0457200 Rorug05G0520000
rosa_samantha Rh1AG057700 Rh1BG048800 Rh1CG059100 Rh1DG063000 Rh2AG522900 Rh2BG536200 Rh2BG553200 Rh2CG507800 Rh2DG545200 Rh6AG034100 Rh6BG029300 Rh6DG028700
rosa_wichuraiana Rw0G023110 Rw1G004930 Rw2G043170 Rw2G044730 Rw6G002760 Rw6G002920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 180
AclWI GGATC 1 cut(s) 257
AcoI YGGCCR 2 cut(s) 274, 358
AfaI GTAC 1 cut(s) 317
AfiI CCNNNNNNNGG 2 cut(s) 272, 375
AgsI TTSAA 1 cut(s) 259
AjiI CACGTC 1 cut(s) 67
AluBI AGCT 3 cut(s) 32, 38, 128
AluI AGCT 3 cut(s) 32, 38, 128
AlwI GGATC 1 cut(s) 257
AoxI GGCC 2 cut(s) 274, 358
ApeKI GCWGC 1 cut(s) 29
AspS9I GGNCC 1 cut(s) 215
AvaII GGWCC 1 cut(s) 215
BalI TGGCCA 2 cut(s) 276, 360
BanII GRGCYC 1 cut(s) 370
BauI CACGAG 1 cut(s) 284
BbvCI CCTCAGC 1 cut(s) 118
BbvI GCAGC 1 cut(s) 41
BccI CCATC 2 cut(s) 266, 350
BfmI CTRYAG 1 cut(s) 33
BisI GCNGC 2 cut(s) 30, 181
BlsI GCNGC 2 cut(s) 31, 182
Bme18I GGWCC 1 cut(s) 215
BmgBI CACGTC 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 215
BmiI GGNNCC 2 cut(s) 228, 367
BmsI GCATC 1 cut(s) 127
Bpu10I CCTNAGC 1 cut(s) 118
BsaJI CCNNGG 3 cut(s) 247, 361, 370
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bsc4I CCNNNNNNNGG 2 cut(s) 272, 375
BseDI CCNNGG 3 cut(s) 247, 361, 370
BseLI CCNNNNNNNGG 2 cut(s) 272, 375
BseMII CTCAG 1 cut(s) 132
BseRI GAGGAG 2 cut(s) 106, 213
BseXI GCAGC 1 cut(s) 41
BshFI GGCC 2 cut(s) 276, 360
BslI CCNNNNNNNGG 2 cut(s) 272, 375
BsnI GGCC 2 cut(s) 276, 360
Bsp1286I GDGCHC 1 cut(s) 370
Bsp143I GATC 1 cut(s) 262
BspACI CCGC 1 cut(s) 180
BspANI GGCC 2 cut(s) 276, 360
BspCNI CTCAG 1 cut(s) 131
BspLI GGNNCC 2 cut(s) 228, 367
BspPI GGATC 1 cut(s) 257
BssECI CCNNGG 3 cut(s) 247, 361, 370
BssMI GATC 1 cut(s) 262
BssSI CACGAG 1 cut(s) 284
BssT1I CCWWGG 3 cut(s) 247, 361, 370
Bst2BI CACGAG 1 cut(s) 284
BstDEI CTNAG 1 cut(s) 118
BstKTI GATC 1 cut(s) 265
BstMBI GATC 1 cut(s) 262
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstSFI CTRYAG 1 cut(s) 33
BstV1I GCAGC 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 262
BstYI RGATCY 1 cut(s) 262
BsuRI GGCC 2 cut(s) 276, 360
BtrI CACGTC 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 215
Csp6I GTAC 1 cut(s) 316
CviAII CATG 1 cut(s) 13
CviJI RGCY 9 cut(s) 32, 38, 44, 128, 227, 276, 328, 360, 368
CviKI_1 RGCY 9 cut(s) 32, 38, 44, 128, 227, 276, 328, 360, 368
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 1 cut(s) 118
DpnI GATC 1 cut(s) 264
DpnII GATC 1 cut(s) 262
EaeI YGGCCR 2 cut(s) 274, 358
Eco130I CCWWGG 3 cut(s) 247, 361, 370
Eco24I GRGCYC 1 cut(s) 370
Eco47I GGWCC 1 cut(s) 215
EcoO109I RGGNCCY 1 cut(s) 215
EcoT14I CCWWGG 3 cut(s) 247, 361, 370
EcoT38I GRGCYC 1 cut(s) 370
ErhI CCWWGG 3 cut(s) 247, 361, 370
FaeI CATG 1 cut(s) 16
FaiI YATR 8 cut(s) 14, 84, 102, 154, 187, 212, 428, 440
FalI AAGNNNNNCTT 2 cut(s) 354, 386
FatI CATG 1 cut(s) 12
Fnu4HI GCNGC 2 cut(s) 30, 181
FriOI GRGCYC 1 cut(s) 370
Fsp4HI GCNGC 2 cut(s) 30, 181
GluI GCNGC 2 cut(s) 30, 181
HaeIII GGCC 2 cut(s) 276, 360
Hin1II CATG 1 cut(s) 16
HindIII AAGCTT 1 cut(s) 126
HinfI GANTC 1 cut(s) 113
Hpy166II GTNNAC 2 cut(s) 164, 289
Hpy188I TCNGA 1 cut(s) 295
Hpy188III TCNNGA 3 cut(s) 266, 286, 434
Hpy8I GTNNAC 2 cut(s) 164, 289
HpyCH4IV ACGT 2 cut(s) 66, 399
HpyCH4V TGCA 3 cut(s) 77, 222, 241
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 118
HpySE526I ACGT 2 cut(s) 66, 399
Hsp92II CATG 1 cut(s) 16
Kzo9I GATC 1 cut(s) 262
LmnI GCTCC 3 cut(s) 200, 232, 365
LpnPI CCDG 4 cut(s) 64, 310, 324, 419
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 1 cut(s) 127
MaeII ACGT 2 cut(s) 66, 399
MaeIII GTNAC 1 cut(s) 67
MalI GATC 1 cut(s) 264
MboI GATC 1 cut(s) 262
MboII GAAGA 1 cut(s) 281
MflI RGATCY 1 cut(s) 262
MhlI GDGCHC 1 cut(s) 370
MlsI TGGCCA 2 cut(s) 276, 360
MluCI AATT 1 cut(s) 429
MluNI TGGCCA 2 cut(s) 276, 360
MlyI GAGTC 1 cut(s) 107
MmeI TCCRAC 2 cut(s) 356, 444
MnlI CCTC 3 cut(s) 127, 191, 396
Mox20I TGGCCA 2 cut(s) 276, 360
MscI TGGCCA 2 cut(s) 276, 360
MseI TTAA 3 cut(s) 194, 396, 450
Msp20I TGGCCA 2 cut(s) 276, 360
MwoI GCNNNNNNNGC 1 cut(s) 35
NdeII GATC 1 cut(s) 262
NlaIII CATG 1 cut(s) 16
NlaIV GGNNCC 2 cut(s) 228, 367
NmuCI GTSAC 1 cut(s) 67
PcsI WCGNNNNNNNCGW 1 cut(s) 405
PkrI GCNGC 2 cut(s) 31, 182
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PpuMI RGGWCCY 1 cut(s) 215
Psp5II RGGWCCY 1 cut(s) 215
PspN4I GGNNCC 2 cut(s) 228, 367
PspPI GGNCC 1 cut(s) 215
PspPPI RGGWCCY 1 cut(s) 215
PsuI RGATCY 1 cut(s) 262
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
SaqAI TTAA 3 cut(s) 194, 396, 450
SatI GCNGC 2 cut(s) 30, 181
Sau3AI GATC 1 cut(s) 262
Sau96I GGNCC 1 cut(s) 215
SchI GAGTC 1 cut(s) 107
SduI GDGCHC 1 cut(s) 370
SetI ASST 9 cut(s) 34, 40, 69, 130, 217, 240, 343, 402, 407
SfaNI GCATC 1 cut(s) 127
SfcI CTRYAG 1 cut(s) 33
SinI GGWCC 1 cut(s) 215
Sse9I AATT 1 cut(s) 429
SsiI CCGC 1 cut(s) 180
StyI CCWWGG 3 cut(s) 247, 361, 370
TaiI ACGT 2 cut(s) 69, 402
TaqI TCGA 2 cut(s) 158, 408
TasI AATT 1 cut(s) 429
TauI GCSGC 1 cut(s) 183
Tru1I TTAA 3 cut(s) 194, 396, 450
Tru9I TTAA 3 cut(s) 194, 396, 450
TseFI GTSAC 1 cut(s) 67
TseI GCWGC 1 cut(s) 29
Tsp45I GTSAC 1 cut(s) 67
VpaK11BI GGWCC 1 cut(s) 215
XcmI CCANNNNNNNNNTGG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.