Prupe.3G109200_v2.0.a1

Exopolygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000434
Physical Location & Seq
Reverse (-)
8800438 .. 8801531
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G109200.1

Sequence Viewer

Length: 960 bp
ATGCAAGTTCAAGGCACATTGCAGGCTCCAGCAGACGCTGGCCAACTCACAAGACCGGATACTTGGGTTGGTTTTCAGTACATTGACATGCTCACCTTATCAGGTGGTGGGACTTTTGATGGCCAAGGAGCACTTTCTTGGAATCAAAATGACTGCCACAAAAACAAAAATTGCAAACCTCCTCCCGTTAATCTGCGGTTTGAATTCCTCACAAATTCCAAAGTTCAGGACATAACTTCACTTAACAGCAAATTTTTCCACATCCATGTTTTCCGGTGCAACCATACTACATTTCAACAGCTTACCATCACAGCACCTGACGAGAGCAGAAACACAGATGGAATCCATATCGGGGCTTCGACTGGTATCAACATTACTCATTCAAAGATTGGAACTGGGGATGACTGTATTTCTATTGGTGATGACTCCCACGAAATCACAGTGACTGGTGTTACTTGTGGGCCAGGCCATGGAATAAGCATTGGAAGCCTTGGAAAATATAAAGAAGAAAAGGATGTGACCGGGATCATAGTTAAGAACTGCACCCTGACTAATACGGAGAACGGTGTGAGAATCAAAACATTTCCAGATTCTCCTTCGCCTAGCTCTGCCTCGGGTATACACTATGAGGATATTATCATGGTTAATGTCAGTAACCCTATCCTCATAGACCAATTGTACTGCCCATATACTAAGTGTGAACAAAAGCCTCCGTCAAAAGTTAAGATCAACAATGTCAGCTTCAAGAACATTAAGGGCTCATCTTTCACTCCACTTGCAGTCAAGCTTGTATGTACCACGGGCAAACCGTGTGAGAATGTGGAGTTGACTGACATTGATCTCACCTACGGTGGAGACAAAGGCCCTCTTACCTCTGTGTGTTCCAATGTCAAGCCCACAATTACTGGCGTGACAAAGGCTCTTGGTTGTGCTACATCGTCCTTGGCACCTCTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

320

Amino Acids

34.19

Weight (kDa)

6.49

Isoelectric Point (pI)

31.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07820 AT3G07830 AT3G07840 AT5G48140
fragaria_vesca FvH4_1g26811 FvH4_2g02350 FvH4_6g41380 FvH4_6g41380 FvH4_6g41380 FvH4_6g41430 FvH4_6g41740 FvH4_6g43060 FvH4_7g02910
malus_domestica MD00G1117700.v1.1 MD00G1117800.v1.1 MD00G1117900.v1.1 MD09G1120000.v1.1 MD09G1120100.v1.1 MD09G1120200.v1.1 MD09G1120300.v1.1 MD12G1142000.v1.1 MD13G1218300.v1.1 MD13G1220100.v1.1 MD13G1220200.v1.1 MD16G1223300.v1.1 MD16G1223500.v1.1 MD16G1223600.v1.1 MD17G1110800.v1.1
prunus_persica Prupe.1G044900_v2.0.a1 Prupe.1G045000_v2.0.a1 Prupe.1G167700_v2.0.a1 Prupe.2G005600_v2.0.a1 Prupe.2G005700_v2.0.a1 Prupe.2G008600_v2.0.a1 Prupe.2G009200_v2.0.a1 Prupe.2G009300_v2.0.a1 Prupe.2G009400_v2.0.a1 Prupe.3G109100_v2.0.a1 Prupe.3G109200_v2.0.a1 Prupe.3G109400_v2.0.a1 Prupe.3G109500_v2.0.a1 Prupe.3G109700_v2.0.a1 Prupe.3G203300_v2.0.a1 Prupe.3G203600_v2.0.a1 Prupe.3G203900_v2.0.a1 Prupe.3G204000_v2.0.a1 Prupe.3G204100_v2.0.a1 Prupe.3G204200_v2.0.a1
pyrus_communis pycom09g04480 pycom09g04490 pycom09g04500 pycom12g13680
rosa_chinensis RchiOBHm_Chr1g0323871 RchiOBHm_Chr2g0156921 RchiOBHm_Chr2g0159061 RchiOBHm_Chr6g0246271 RchiOBHm_Chr6g0246281
rosa_laevigata RLG00000015266 RLG00000020954 RLG00000021134 RLG00000030246 RLG00000030250 RLG00000030295
rosa_multiflora Rmu_co8098394.1_g000001 Rmu_co8404671.1_g000001 Rmu_sc0000507.1_g000021 Rmu_sc0001066.1_g000011 Rmu_sc0001066.1_g000015 Rmu_sc0009451.1_g000001 Rmu_ssc0000408.1_g000005
rosa_roxburghii Rroxscaffold_2G00090810 Rroxscaffold_2G00092580 Rroxscaffold_4G00326280 Rroxscaffold_7G00214720
rosa_rugosa Rorug01G0040400 Rorug02G0457200 Rorug05G0520000
rosa_samantha Rh1AG057700 Rh1BG048800 Rh1CG059100 Rh1DG063000 Rh2AG522900 Rh2BG536200 Rh2BG553200 Rh2CG507800 Rh2DG545200 Rh6AG034100 Rh6BG029300 Rh6DG028700
rosa_wichuraiana Rw0G023110 Rw1G004930 Rw2G043170 Rw2G044730 Rw6G002760 Rw6G002920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 946
AccB7I CCANNNNNTGG 1 cut(s) 470
AccI GTMKAC 1 cut(s) 619
AciI CCGC 1 cut(s) 196
AclWI GGATC 1 cut(s) 533
AcoI YGGCCR 2 cut(s) 40, 121
AcsI RAATTY 3 cut(s) 203, 214, 251
AfaI GTAC 3 cut(s) 80, 680, 796
AfiI CCNNNNNNNGG 2 cut(s) 352, 470
AgsI TTSAA 5 cut(s) 11, 203, 296, 384, 745
AjnI CCWGG 1 cut(s) 463
AluBI AGCT 4 cut(s) 301, 606, 741, 787
AluI AGCT 4 cut(s) 301, 606, 741, 787
Alw21I GWGCWC 1 cut(s) 133
Alw26I GTCTC 1 cut(s) 849
AlwI GGATC 1 cut(s) 533
AlwNI CAGNNNCTG 3 cut(s) 38, 317, 446
Ama87I CYCGRG 1 cut(s) 613
AoxI GGCC 5 cut(s) 40, 121, 461, 466, 862
ApoI RAATTY 3 cut(s) 203, 214, 251
AspS9I GGNCC 2 cut(s) 461, 863
AsuC2I CCSGG 1 cut(s) 523
AsuHPI GGTGA 3 cut(s) 85, 431, 835
AvaI CYCGRG 1 cut(s) 613
BaeI ACNNNNGTAYC 2 cut(s) 51, 84
BalI TGGCCA 2 cut(s) 42, 123
BanI GGYRCC 1 cut(s) 946
BanII GRGCYC 1 cut(s) 761
Bbv12I GWGCWC 1 cut(s) 133
BccI CCATC 3 cut(s) 113, 314, 332
BciT130I CCWGG 1 cut(s) 465
BciVI GTATCC 1 cut(s) 52
BcnI CCSGG 1 cut(s) 523
BcoDI GTCTC 1 cut(s) 849
BfaI CTAG 1 cut(s) 603
BfuI GTATCC 1 cut(s) 52
Bme1390I CCNGG 2 cut(s) 465, 523
BmeT110I CYCGRG 1 cut(s) 613
BmgT120I GGNCC 2 cut(s) 461, 863
BmiI GGNNCC 2 cut(s) 27, 948
BmrFI CCNGG 2 cut(s) 465, 523
BmrI ACTGGG 1 cut(s) 405
BmuI ACTGGG 1 cut(s) 405
BpmI CTGGAG 1 cut(s) 12
BpuMI CCSGG 1 cut(s) 523
BsaJI CCNNGG 6 cut(s) 124, 469, 490, 612, 798, 942
BsaWI WCCGGW 2 cut(s) 55, 273
Bsc4I CCNNNNNNNGG 2 cut(s) 352, 470
Bse1I ACTGG 4 cut(s) 367, 400, 451, 910
Bse3DI GCAATG 1 cut(s) 17
BseBI CCWGG 1 cut(s) 465
BseDI CCNNGG 6 cut(s) 124, 469, 490, 612, 798, 942
BseGI GGATG 3 cut(s) 261, 406, 520
BseLI CCNNNNNNNGG 2 cut(s) 352, 470
BseMI GCAATG 1 cut(s) 17
BseNI ACTGG 4 cut(s) 367, 400, 451, 910
BseRI GAGGAG 1 cut(s) 171
BsgI GTGCAG 1 cut(s) 526
BshFI GGCC 5 cut(s) 42, 123, 463, 468, 864
BshNI GGYRCC 1 cut(s) 946
BsiHKAI GWGCWC 1 cut(s) 133
BsiHKCI CYCGRG 1 cut(s) 613
BsiSI CCGG 3 cut(s) 56, 274, 522
BslFI GGGAC 1 cut(s) 124
BslI CCNNNNNNNGG 2 cut(s) 352, 470
BsmAI GTCTC 1 cut(s) 849
BsmFI GGGAC 1 cut(s) 124
BsnI GGCC 5 cut(s) 42, 123, 463, 468, 864
BsoBI CYCGRG 1 cut(s) 613
Bsp1286I GDGCHC 2 cut(s) 133, 761
Bsp143I GATC 3 cut(s) 525, 726, 838
Bsp19I CCATGG 1 cut(s) 469
BspACI CCGC 1 cut(s) 196
BspANI GGCC 5 cut(s) 42, 123, 463, 468, 864
BspLI GGNNCC 2 cut(s) 27, 948
BspPI GGATC 1 cut(s) 533
BspT107I GGYRCC 1 cut(s) 946
BsrDI GCAATG 1 cut(s) 17
BsrI ACTGG 4 cut(s) 367, 400, 451, 910
BssECI CCNNGG 6 cut(s) 124, 469, 490, 612, 798, 942
BssMI GATC 3 cut(s) 525, 726, 838
BssNAI GTATAC 1 cut(s) 620
BssT1I CCWWGG 4 cut(s) 124, 469, 490, 942
Bst1107I GTATAC 1 cut(s) 620
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 5 cut(s) 407, 442, 566, 810, 851
Bst6I CTCTTC 1 cut(s) 957
BstC8I GCNNGC 2 cut(s) 24, 40
BstDEI CTNAG 1 cut(s) 693
BstDSI CCRYGG 2 cut(s) 469, 798
BstF5I GGATG 3 cut(s) 261, 406, 520
BstKTI GATC 3 cut(s) 528, 729, 841
BstMAI GTCTC 1 cut(s) 849
BstMBI GATC 3 cut(s) 525, 726, 838
BstMWI GCNNNNNNNGC 1 cut(s) 486
BstNI CCWGG 1 cut(s) 465
BstNSI RCATGY 1 cut(s) 91
BstSCI CCNGG 2 cut(s) 463, 521
BstZ17I GTATAC 1 cut(s) 620
BsuI GTATCC 1 cut(s) 52
BsuRI GGCC 5 cut(s) 42, 123, 463, 468, 864
BtgI CCRYGG 2 cut(s) 469, 798
BtsCI GGATG 3 cut(s) 261, 406, 520
BtsIMutI CAGTG 1 cut(s) 447
Cac8I GCNNGC 2 cut(s) 24, 40
CaiI CAGNNNCTG 3 cut(s) 38, 317, 446
Cfr13I GGNCC 2 cut(s) 461, 863
CseI GACGC 1 cut(s) 44
Csp6I GTAC 3 cut(s) 79, 679, 795
CviAII CATG 4 cut(s) 88, 266, 470, 640
CviQI GTAC 3 cut(s) 79, 679, 795
DdeI CTNAG 1 cut(s) 693
DpnI GATC 3 cut(s) 527, 728, 840
DpnII GATC 3 cut(s) 525, 726, 838
EaeI YGGCCR 2 cut(s) 40, 121
Eam1104I CTCTTC 1 cut(s) 957
EarI CTCTTC 1 cut(s) 957
Eco130I CCWWGG 4 cut(s) 124, 469, 490, 942
Eco24I GRGCYC 1 cut(s) 761
Eco88I CYCGRG 1 cut(s) 613
EcoO109I RGGNCCY 1 cut(s) 863
EcoRI GAATTC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 463
EcoT14I CCWWGG 4 cut(s) 124, 469, 490, 942
EcoT38I GRGCYC 1 cut(s) 761
ErhI CCWWGG 4 cut(s) 124, 469, 490, 942
FaeI CATG 4 cut(s) 91, 269, 473, 643
FalI AAGNNNNNCTT 4 cut(s) 117, 149, 852, 884
FaqI GGGAC 1 cut(s) 124
FatI CATG 4 cut(s) 87, 265, 469, 639
FblI GTMKAC 1 cut(s) 619
FokI GGATG 3 cut(s) 248, 413, 527
FriOI GRGCYC 1 cut(s) 761
FspBI CTAG 1 cut(s) 603
GsuI CTGGAG 1 cut(s) 12
HaeIII GGCC 5 cut(s) 42, 123, 463, 468, 864
HapII CCGG 3 cut(s) 56, 274, 522
HgaI GACGC 1 cut(s) 44
Hin1II CATG 4 cut(s) 91, 269, 473, 643
HincII GTYRAC 1 cut(s) 828
HindII GTYRAC 1 cut(s) 828
HindIII AAGCTT 1 cut(s) 785
HinfI GANTC 5 cut(s) 142, 342, 425, 573, 590
HpaII CCGG 3 cut(s) 56, 274, 522
HphI GGTGA 3 cut(s) 85, 431, 835
Hpy166II GTNNAC 3 cut(s) 620, 701, 828
Hpy188III TCNNGA 3 cut(s) 227, 587, 745
Hpy8I GTNNAC 3 cut(s) 620, 701, 828
HpyAV CCTTC 1 cut(s) 606
HpyCH4III ACNGT 5 cut(s) 407, 442, 566, 810, 851
HpyCH4V TGCA 6 cut(s) 4, 22, 174, 279, 543, 779
HpyF10VI GCNNNNNNNGC 1 cut(s) 486
HpyF3I CTNAG 1 cut(s) 693
Hsp92II CATG 4 cut(s) 91, 269, 473, 643
Kzo9I GATC 3 cut(s) 525, 726, 838
LmnI GCTCC 2 cut(s) 31, 128
MaeI CTAG 1 cut(s) 603
MaeIII GTNAC 5 cut(s) 442, 451, 517, 653, 910
MalI GATC 3 cut(s) 527, 728, 840
MboI GATC 3 cut(s) 525, 726, 838
MboII GAAGA 2 cut(s) 518, 944
MfeI CAATTG 1 cut(s) 674
MhlI GDGCHC 2 cut(s) 133, 761
MlsI TGGCCA 2 cut(s) 42, 123
MluCI AATT 6 cut(s) 169, 203, 214, 251, 674, 900
MluNI TGGCCA 2 cut(s) 42, 123
MlyI GAGTC 1 cut(s) 419
Mox20I TGGCCA 2 cut(s) 42, 123
MscI TGGCCA 2 cut(s) 42, 123
MseI TTAA 6 cut(s) 189, 243, 534, 645, 723, 753
MslI CAYNNNNRTG 2 cut(s) 86, 264
Msp20I TGGCCA 2 cut(s) 42, 123
MspI CCGG 3 cut(s) 56, 274, 522
MspR9I CCNGG 2 cut(s) 465, 523
MunI CAATTG 1 cut(s) 674
MvaI CCWGG 1 cut(s) 465
MwoI GCNNNNNNNGC 1 cut(s) 486
NciI CCSGG 1 cut(s) 523
NcoI CCATGG 1 cut(s) 469
NdeII GATC 3 cut(s) 525, 726, 838
NlaIII CATG 4 cut(s) 91, 269, 473, 643
NlaIV GGNNCC 2 cut(s) 27, 948
NmuCI GTSAC 3 cut(s) 442, 517, 910
NspI RCATGY 1 cut(s) 91
PcsI WCGNNNNNNNCGW 1 cut(s) 806
PfeI GAWTC 4 cut(s) 142, 342, 573, 590
PflMI CCANNNNNTGG 1 cut(s) 470
PleI GAGTC 1 cut(s) 419
PpsI GAGTC 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 463
PspGI CCWGG 1 cut(s) 463
PspN4I GGNNCC 2 cut(s) 27, 948
PspPI GGNCC 2 cut(s) 461, 863
PstNI CAGNNNCTG 3 cut(s) 38, 317, 446
RsaI GTAC 3 cut(s) 80, 680, 796
RsaNI GTAC 3 cut(s) 79, 679, 795
RseI CAYNNNNRTG 2 cut(s) 86, 264
SaqAI TTAA 6 cut(s) 189, 243, 534, 645, 723, 753
Sau3AI GATC 3 cut(s) 525, 726, 838
Sau96I GGNCC 2 cut(s) 461, 863
SchI GAGTC 1 cut(s) 419
ScrFI CCNGG 2 cut(s) 465, 523
SduI GDGCHC 2 cut(s) 133, 761
SmiMI CAYNNNNRTG 2 cut(s) 86, 264
Sse9I AATT 6 cut(s) 169, 203, 214, 251, 674, 900
SsiI CCGC 1 cut(s) 196
SspMI CTAG 1 cut(s) 603
StyD4I CCNGG 2 cut(s) 463, 521
StyI CCWWGG 4 cut(s) 124, 469, 490, 942
TaaI ACNGT 5 cut(s) 407, 442, 566, 810, 851
TaqI TCGA 1 cut(s) 359
TasI AATT 6 cut(s) 169, 203, 214, 251, 674, 900
TatI WGTACW 2 cut(s) 78, 678
TfiI GAWTC 4 cut(s) 142, 342, 573, 590
Tru1I TTAA 6 cut(s) 189, 243, 534, 645, 723, 753
Tru9I TTAA 6 cut(s) 189, 243, 534, 645, 723, 753
TscAI CASTG 1 cut(s) 447
TseFI GTSAC 3 cut(s) 442, 517, 910
Tsp45I GTSAC 3 cut(s) 442, 517, 910
TspGWI ACGGA 2 cut(s) 572, 702
TspRI CASTG 1 cut(s) 447
Van91I CCANNNNNTGG 1 cut(s) 470
XapI RAATTY 3 cut(s) 203, 214, 251
XceI RCATGY 1 cut(s) 91
XmiI GTMKAC 1 cut(s) 619
XspI CTAG 1 cut(s) 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.