Rw2G044730

Exopolygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000434
Physical Location & Seq
Forward (+)
71360029 .. 71361148
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G044730.1

Sequence Viewer

Length: 1038 bp
ATGGGTCTCAAATTGATGACTATCATGGCGATATTCATGTTCTTATTGTTAGCAGCTACAGCTAAAGCCCAACCCTGTGTAGTCTTTGACGTGACGAGTGCAAAATATGGTGGAAAAACTAACTATGATATTACAGACTCCTCAGCACAAGCTTGGACAGATGCTTGTGCTTCTGTATGGTCGAGTAAACTCGTTGTTCCAAGCGGCACATATTGGTTAAGAGGAGCAACTTTTATAGGTCCTTGCAAGGCTCCTATCAAGGTGCAAATCCAAGGAAAGTTGAAAGATCCCGAAGATGGCCACCAACTCGTGAACTCGGATTTTTGGGTTGCTTTTCGGTACATTGACAGGCTCTACTTATCAGGTGGTGGAACTTTTGATGGCCAAGGAGCCCTTGGTTGGAATACTTATCGTGCTATTAACGTGAGGTTCGACTACATCTCCAACTCCATAATTCAGGACATAACTTCCCTTAACAGCAGAAGTTTCCATATTAACGTTTGTGCATGCCATGATGTTACATTCCAGGGTGTAACTGTCGTAGCACTCGGCGAGAGTTCTAATACAGATGGAATGCACATTGCACATTCGTGGAGGATCAACGTAACGGATACAAACATCGAAACTGGAGATGATTGTATTTCTATTTGTAATGGCACTTCGCAACTCACAGTAACCAATGTTAATTGTGGACCGGGACATGGAATAAGCATAGGAAGTCTTGGAAAAAATAAGAACTGCACCCTCACGAACACAACAAACGGTGTGAGAATCAAGACATGGCCTAGTTCTCCCAGTGCTCGTTTTGCCTTACACATATACTTTGAGGATATTATCATGAATAATGTGAAGAACCCCATCATTATAGACCAAAACTACTGCCCCAGGCATTGTTGCAAACAACAGGCTCAAGGCTCATCTGCATCACAAGTTGCCGTCAATATTGCATGTAGTGGGAGCTTACCATGTGAGAATGTAGAATTGATAGGCATTGATCTAGTATACAGTGGAGATGGCAATCGACCTATTACATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

345

Amino Acids

37.34

Weight (kDa)

6.68

Isoelectric Point (pI)

32.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_28 PF00295 56 - 338 5.1e-65 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07820 AT3G07830 AT3G07840 AT5G48140
fragaria_vesca FvH4_1g26811 FvH4_2g02350 FvH4_6g41380 FvH4_6g41380 FvH4_6g41380 FvH4_6g41430 FvH4_6g41740 FvH4_6g43060 FvH4_7g02910
malus_domestica MD00G1117700.v1.1 MD00G1117800.v1.1 MD00G1117900.v1.1 MD09G1120000.v1.1 MD09G1120100.v1.1 MD09G1120200.v1.1 MD09G1120300.v1.1 MD12G1142000.v1.1 MD13G1218300.v1.1 MD13G1220100.v1.1 MD13G1220200.v1.1 MD16G1223300.v1.1 MD16G1223500.v1.1 MD16G1223600.v1.1 MD17G1110800.v1.1
prunus_persica Prupe.1G044900_v2.0.a1 Prupe.1G045000_v2.0.a1 Prupe.1G167700_v2.0.a1 Prupe.2G005600_v2.0.a1 Prupe.2G005700_v2.0.a1 Prupe.2G008600_v2.0.a1 Prupe.2G009200_v2.0.a1 Prupe.2G009300_v2.0.a1 Prupe.2G009400_v2.0.a1 Prupe.3G109100_v2.0.a1 Prupe.3G109200_v2.0.a1 Prupe.3G109400_v2.0.a1 Prupe.3G109500_v2.0.a1 Prupe.3G109700_v2.0.a1 Prupe.3G203300_v2.0.a1 Prupe.3G203600_v2.0.a1 Prupe.3G203900_v2.0.a1 Prupe.3G204000_v2.0.a1 Prupe.3G204100_v2.0.a1 Prupe.3G204200_v2.0.a1
pyrus_communis pycom09g04480 pycom09g04490 pycom09g04500 pycom12g13680
rosa_chinensis RchiOBHm_Chr1g0323871 RchiOBHm_Chr2g0156921 RchiOBHm_Chr2g0159061 RchiOBHm_Chr6g0246271 RchiOBHm_Chr6g0246281
rosa_laevigata RLG00000015266 RLG00000020954 RLG00000021134 RLG00000030246 RLG00000030250 RLG00000030295
rosa_multiflora Rmu_co8098394.1_g000001 Rmu_co8404671.1_g000001 Rmu_sc0000507.1_g000021 Rmu_sc0001066.1_g000011 Rmu_sc0001066.1_g000015 Rmu_sc0009451.1_g000001 Rmu_ssc0000408.1_g000005
rosa_roxburghii Rroxscaffold_2G00090810 Rroxscaffold_2G00092580 Rroxscaffold_4G00326280 Rroxscaffold_7G00214720
rosa_rugosa Rorug01G0040400 Rorug02G0457200 Rorug05G0520000
rosa_samantha Rh1AG057700 Rh1BG048800 Rh1CG059100 Rh1DG063000 Rh2AG522900 Rh2BG536200 Rh2BG553200 Rh2CG507800 Rh2DG545200 Rh6AG034100 Rh6BG029300 Rh6DG028700
rosa_wichuraiana Rw0G023110 Rw1G004930 Rw2G043170 Rw2G044730 Rw6G002760 Rw6G002920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1002
AciI CCGC 1 cut(s) 204
AclI AACGTT 1 cut(s) 498
AclWI GGATC 2 cut(s) 281, 605
AcoI YGGCCR 2 cut(s) 298, 382
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 3 cut(s) 296, 399, 701
AgsI TTSAA 1 cut(s) 283
AjiI CACGTC 1 cut(s) 91
AjnI CCWGG 2 cut(s) 525, 884
AleI CACNNNNGTG 1 cut(s) 589
AluBI AGCT 4 cut(s) 56, 62, 152, 960
AluI AGCT 4 cut(s) 56, 62, 152, 960
Alw21I GWGCWC 1 cut(s) 802
Alw26I GTCTC 1 cut(s) 11
AlwI GGATC 2 cut(s) 281, 605
AoxI GGCC 3 cut(s) 298, 382, 782
ApeKI GCWGC 1 cut(s) 53
AspS9I GGNCC 2 cut(s) 239, 692
AsuC2I CCSGG 1 cut(s) 696
AvaII GGWCC 2 cut(s) 239, 692
BalI TGGCCA 2 cut(s) 300, 384
BanII GRGCYC 1 cut(s) 394
BarI GAAGNNNNNNTAC 2 cut(s) 643, 675
BauI CACGAG 1 cut(s) 308
Bbv12I GWGCWC 1 cut(s) 802
BbvCI CCTCAGC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 65
BccI CCATC 5 cut(s) 290, 374, 563, 866, 1007
BceAI ACGGC 1 cut(s) 920
BciT130I CCWGG 2 cut(s) 527, 886
BciVI GTATCC 1 cut(s) 604
BcnI CCSGG 1 cut(s) 696
BcoDI GTCTC 1 cut(s) 11
BfaI CTAG 2 cut(s) 786, 998
BfmI CTRYAG 1 cut(s) 57
BfuI GTATCC 1 cut(s) 604
BisI GCNGC 2 cut(s) 54, 205
BlsI GCNGC 2 cut(s) 55, 206
Bme1390I CCNGG 3 cut(s) 527, 696, 886
Bme18I GGWCC 2 cut(s) 239, 692
BmgBI CACGTC 1 cut(s) 91
BmgT120I GGNCC 2 cut(s) 239, 692
BmiI GGNNCC 2 cut(s) 252, 391
BmrFI CCNGG 3 cut(s) 527, 696, 886
BmrI ACTGGG 1 cut(s) 789
BmsI GCATC 2 cut(s) 151, 932
BmuI ACTGGG 1 cut(s) 789
BpmI CTGGAG 1 cut(s) 648
Bpu10I CCTNAGC 1 cut(s) 142
BpuEI CTTGAG 1 cut(s) 894
BpuMI CCSGG 1 cut(s) 696
BsaBI GATNNNNATC 2 cut(s) 20, 1017
BsaI GGTCTC 1 cut(s) 11
BsaJI CCNNGG 5 cut(s) 271, 385, 394, 526, 884
BsaXI ACNNNNNCTCC 2 cut(s) 425, 455
Bsc4I CCNNNNNNNGG 3 cut(s) 296, 399, 701
Bse1I ACTGG 2 cut(s) 631, 795
Bse3DI GCAATG 1 cut(s) 579
Bse8I GATNNNNATC 2 cut(s) 20, 1017
BseBI CCWGG 2 cut(s) 527, 886
BseDI CCNNGG 5 cut(s) 271, 385, 394, 526, 884
BseJI GATNNNNATC 2 cut(s) 20, 1017
BseLI CCNNNNNNNGG 3 cut(s) 296, 399, 701
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 1 cut(s) 156
BseNI ACTGG 2 cut(s) 631, 795
BseRI GAGGAG 2 cut(s) 130, 237
BseXI GCAGC 1 cut(s) 65
BsgI GTGCAG 1 cut(s) 724
BshFI GGCC 3 cut(s) 300, 384, 784
BsiHKAI GWGCWC 1 cut(s) 802
BsiSI CCGG 1 cut(s) 695
BslFI GGGAC 1 cut(s) 711
BslI CCNNNNNNNGG 3 cut(s) 296, 399, 701
BsmAI GTCTC 1 cut(s) 11
BsmFI GGGAC 1 cut(s) 711
BsmI GAATGC 1 cut(s) 579
BsnI GGCC 3 cut(s) 300, 384, 784
Bso31I GGTCTC 1 cut(s) 11
Bsp1286I GDGCHC 2 cut(s) 394, 802
Bsp143I GATC 3 cut(s) 286, 597, 994
BspACI CCGC 1 cut(s) 204
BspANI GGCC 3 cut(s) 300, 384, 784
BspCNI CTCAG 1 cut(s) 155
BspHI TCATGA 1 cut(s) 837
BspLI GGNNCC 2 cut(s) 252, 391
BspPI GGATC 2 cut(s) 281, 605
BspTNI GGTCTC 1 cut(s) 11
BsrDI GCAATG 1 cut(s) 579
BsrI ACTGG 2 cut(s) 631, 795
BssECI CCNNGG 5 cut(s) 271, 385, 394, 526, 884
BssMI GATC 3 cut(s) 286, 597, 994
BssNAI GTATAC 1 cut(s) 1003
BssSI CACGAG 1 cut(s) 308
BssT1I CCWWGG 3 cut(s) 271, 385, 394
Bst1107I GTATAC 1 cut(s) 1003
Bst2BI CACGAG 1 cut(s) 308
Bst2UI CCWGG 2 cut(s) 527, 886
Bst4CI ACNGT 4 cut(s) 538, 673, 764, 1007
BstC8I GCNNGC 1 cut(s) 508
BstDEI CTNAG 1 cut(s) 142
BstKTI GATC 3 cut(s) 289, 600, 997
BstMAI GTCTC 1 cut(s) 11
BstMBI GATC 3 cut(s) 286, 597, 994
BstMWI GCNNNNNNNGC 2 cut(s) 59, 806
BstNI CCWGG 2 cut(s) 527, 886
BstNSI RCATGY 2 cut(s) 510, 951
BstSCI CCNGG 3 cut(s) 525, 694, 884
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 1 cut(s) 65
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BstZ17I GTATAC 1 cut(s) 1003
BsuI GTATCC 1 cut(s) 604
BsuRI GGCC 3 cut(s) 300, 384, 784
BtrI CACGTC 1 cut(s) 91
BtsIMutI CAGTG 2 cut(s) 802, 1012
Cac8I GCNNGC 1 cut(s) 508
CciI TCATGA 1 cut(s) 837
Cfr13I GGNCC 2 cut(s) 239, 692
Csp6I GTAC 1 cut(s) 340
CviAII CATG 9 cut(s) 25, 37, 507, 512, 701, 780, 838, 948, 966
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 1 cut(s) 142
DpnI GATC 3 cut(s) 288, 599, 996
DpnII GATC 3 cut(s) 286, 597, 994
EaeI YGGCCR 2 cut(s) 298, 382
Eco130I CCWWGG 3 cut(s) 271, 385, 394
Eco24I GRGCYC 1 cut(s) 394
Eco31I GGTCTC 1 cut(s) 11
Eco47I GGWCC 2 cut(s) 239, 692
EcoO109I RGGNCCY 1 cut(s) 239
EcoRII CCWGG 2 cut(s) 525, 884
EcoT14I CCWWGG 3 cut(s) 271, 385, 394
EcoT38I GRGCYC 1 cut(s) 394
ErhI CCWWGG 3 cut(s) 271, 385, 394
FaeI CATG 9 cut(s) 28, 40, 510, 515, 704, 783, 841, 951, 969
FalI AAGNNNNNCTT 2 cut(s) 378, 410
FaqI GGGAC 1 cut(s) 711
FatI CATG 9 cut(s) 24, 36, 506, 511, 700, 779, 837, 947, 965
FblI GTMKAC 1 cut(s) 1002
Fnu4HI GCNGC 2 cut(s) 54, 205
FriOI GRGCYC 1 cut(s) 394
Fsp4HI GCNGC 2 cut(s) 54, 205
FspBI CTAG 2 cut(s) 786, 998
GluI GCNGC 2 cut(s) 54, 205
GsuI CTGGAG 1 cut(s) 648
HaeIII GGCC 3 cut(s) 300, 384, 784
HapII CCGG 1 cut(s) 695
Hin1II CATG 9 cut(s) 28, 40, 510, 515, 704, 783, 841, 951, 969
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 2 cut(s) 137, 771
HpaII CCGG 1 cut(s) 695
Hpy166II GTNNAC 4 cut(s) 188, 313, 692, 1003
Hpy188I TCNGA 1 cut(s) 319
Hpy188III TCNNGA 7 cut(s) 290, 310, 458, 748, 775, 838, 1035
Hpy8I GTNNAC 4 cut(s) 188, 313, 692, 1003
HpyCH4III ACNGT 4 cut(s) 538, 673, 764, 1007
HpyCH4IV ACGT 4 cut(s) 90, 423, 498, 603
HpyF10VI GCNNNNNNNGC 2 cut(s) 59, 806
HpyF3I CTNAG 1 cut(s) 142
HpySE526I ACGT 4 cut(s) 90, 423, 498, 603
Hsp92II CATG 9 cut(s) 28, 40, 510, 515, 704, 783, 841, 951, 969
Kzo9I GATC 3 cut(s) 286, 597, 994
LmnI GCTCC 4 cut(s) 224, 256, 389, 957
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 2 cut(s) 151, 932
MaeI CTAG 2 cut(s) 786, 998
MaeII ACGT 4 cut(s) 90, 423, 498, 603
MaeIII GTNAC 5 cut(s) 91, 517, 532, 604, 673
MalI GATC 3 cut(s) 288, 599, 996
MboI GATC 3 cut(s) 286, 597, 994
MboII GAAGA 2 cut(s) 305, 862
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 2 cut(s) 394, 802
MlsI TGGCCA 2 cut(s) 300, 384
MluCI AATT 4 cut(s) 11, 453, 685, 980
MluNI TGGCCA 2 cut(s) 300, 384
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 2 cut(s) 380, 468
MnlI CCTC 6 cut(s) 151, 215, 420, 588, 755, 820
Mox20I TGGCCA 2 cut(s) 300, 384
MscI TGGCCA 2 cut(s) 300, 384
MseI TTAA 5 cut(s) 218, 420, 474, 495, 684
MslI CAYNNNNRTG 1 cut(s) 589
Msp20I TGGCCA 2 cut(s) 300, 384
MspI CCGG 1 cut(s) 695
MspR9I CCNGG 3 cut(s) 527, 696, 886
Mva1269I GAATGC 1 cut(s) 579
MvaI CCWGG 2 cut(s) 527, 886
MwoI GCNNNNNNNGC 2 cut(s) 59, 806
NciI CCSGG 1 cut(s) 696
NdeII GATC 3 cut(s) 286, 597, 994
NlaIII CATG 9 cut(s) 28, 40, 510, 515, 704, 783, 841, 951, 969
NlaIV GGNNCC 2 cut(s) 252, 391
NmeAIII GCCGAG 1 cut(s) 528
NmuCI GTSAC 1 cut(s) 91
NspI RCATGY 2 cut(s) 510, 951
OliI CACNNNNGTG 1 cut(s) 589
PaeI GCATGC 1 cut(s) 510
PagI TCATGA 1 cut(s) 837
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PctI GAATGC 1 cut(s) 579
PfeI GAWTC 1 cut(s) 771
PkrI GCNGC 2 cut(s) 55, 206
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PpuMI RGGWCCY 1 cut(s) 239
Psp1406I AACGTT 1 cut(s) 498
Psp5II RGGWCCY 1 cut(s) 239
Psp6I CCWGG 2 cut(s) 525, 884
PspGI CCWGG 2 cut(s) 525, 884
PspN4I GGNNCC 2 cut(s) 252, 391
PspPI GGNCC 2 cut(s) 239, 692
PspPPI RGGWCCY 1 cut(s) 239
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 1 cut(s) 589
SaqAI TTAA 5 cut(s) 218, 420, 474, 495, 684
SatI GCNGC 2 cut(s) 54, 205
Sau3AI GATC 3 cut(s) 286, 597, 994
Sau96I GGNCC 2 cut(s) 239, 692
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 3 cut(s) 527, 696, 886
SduI GDGCHC 2 cut(s) 394, 802
SfaNI GCATC 2 cut(s) 151, 932
SfcI CTRYAG 1 cut(s) 57
SinI GGWCC 2 cut(s) 239, 692
SmiMI CAYNNNNRTG 1 cut(s) 589
SmlI CTYRAG 1 cut(s) 909
SmoI CTYRAG 1 cut(s) 909
SphI GCATGC 1 cut(s) 510
Sse9I AATT 4 cut(s) 11, 453, 685, 980
SsiI CCGC 1 cut(s) 204
SspI AATATT 1 cut(s) 943
SspMI CTAG 2 cut(s) 786, 998
StyD4I CCNGG 3 cut(s) 525, 694, 884
StyI CCWWGG 3 cut(s) 271, 385, 394
TaaI ACNGT 4 cut(s) 538, 673, 764, 1007
TaiI ACGT 4 cut(s) 93, 426, 501, 606
TaqI TCGA 4 cut(s) 182, 432, 621, 1021
TasI AATT 4 cut(s) 11, 453, 685, 980
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 1 cut(s) 771
Tru1I TTAA 5 cut(s) 218, 420, 474, 495, 684
Tru9I TTAA 5 cut(s) 218, 420, 474, 495, 684
TscAI CASTG 2 cut(s) 802, 1012
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 25, 854
TspGWI ACGGA 1 cut(s) 623
TspRI CASTG 2 cut(s) 802, 1012
VpaK11BI GGWCC 2 cut(s) 239, 692
XceI RCATGY 2 cut(s) 510, 951
XcmI CCANNNNNNNNNTGG 1 cut(s) 392
XmiI GTMKAC 1 cut(s) 1002
XspI CTAG 2 cut(s) 786, 998
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.