Prupe.3G204100_v2.0.a1

Exopolygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000434
Physical Location & Seq
Forward (+)
21238790 .. 21242168
3379 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G204100.1

Sequence Viewer

Length: 1200 bp
ATGGGATTGAAACTGAAAAATGTCTTGCCAGTATTTGTGTTCTTGTTGTTAGCATCCACAGCTAAAGCCCAAACAGTGTTTGATGTGACAAGTGCAAAATATGGTGGAAAGCCAAACTCTGATATTACCCAGGCTTTGAGCAAGGCTTGGACAGATGCATGTGCTTCAACATCACCAAGTAAACTTGTTGTTCCAAAAGGAACATTCAAGTTTTTAGGAACAACTTTTAAAGGTCCTTGCAAGGCTCCTATCGCGTTCCAGCTCCAAGGAATATTGCAGGCTCCAGCAGATGGCAACCAACTCCCAAAGAAGGATACTTGGATTAGTTTCGACCACATTGACCGGCTCACCATATCAGGTGGTGGAACTTTTGATGGCCAAGGAGCAATTTCTTGGAAAGAAAATGATTGCCACAAAAACAAAAATTGCAAATCTATTGCCATTAATTTGAGGCTCAACTTCATCACCAATTCCAGAATTGAGTACATAACTACAAAAGATAGCAAAAATTTCCACGTCAATGTTTTGGGGTGCACCAATGTTGCATTCCACCATTTCACCGTCTCAGCACCTAAAGAGAGCATTAACACAGATGGAATCCACATTGGACGTTCCACTGGGATCAGCATCATTGACTCAACCATCAAAACTGGGGATGATTGTATCTCAATTGGTGACGGTACCAAAAATCTCAACGTGACCAACGTTACTTGCGGACCAGGCCATGGCATAAGCATCGGGAGCCTTGGAAGGTACCAGAAGGAAGAACCTGTGTCTGGGATCACAATCAAGAACTGCACCTTGACTGATACACAGAATGGTGTGAGAATCAAAACATGGCCTGCTTCCCCATCAGCTGGTACTGCCTCAGATATTCACTTTGAGGATATTATCATGGTTAATGTTGGTAACCCTATCCTCATAGACCAAGAGTACTGCCCATGGAACCAGTGCACACTAAAGGTTCCATCCAAAGTTAAGATCAGCAATGTTAGCTTCAAAAACATCAAGGGCACATCTACCACTCCACTTGCTGTCAAGCTTGTATGCAGCAAAGGCCTACCATGTGAGAAAGTGGAACTAAGTGACATTGATTTAAAGTACACTGGAAACCAAGGCCCTCTTACCTCTAAATGTACTAATGTCAAGCCCACGATTACTCGCGTGACAAAGCCTCTTGCTTGTGCAACCTCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

400

Amino Acids

42.76

Weight (kDa)

9.13

Isoelectric Point (pI)

24.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07820 AT3G07830 AT3G07840 AT5G48140
fragaria_vesca FvH4_1g26811 FvH4_2g02350 FvH4_6g41380 FvH4_6g41380 FvH4_6g41380 FvH4_6g41430 FvH4_6g41740 FvH4_6g43060 FvH4_7g02910
malus_domestica MD00G1117700.v1.1 MD00G1117800.v1.1 MD00G1117900.v1.1 MD09G1120000.v1.1 MD09G1120100.v1.1 MD09G1120200.v1.1 MD09G1120300.v1.1 MD12G1142000.v1.1 MD13G1218300.v1.1 MD13G1220100.v1.1 MD13G1220200.v1.1 MD16G1223300.v1.1 MD16G1223500.v1.1 MD16G1223600.v1.1 MD17G1110800.v1.1
prunus_persica Prupe.1G044900_v2.0.a1 Prupe.1G045000_v2.0.a1 Prupe.1G167700_v2.0.a1 Prupe.2G005600_v2.0.a1 Prupe.2G005700_v2.0.a1 Prupe.2G008600_v2.0.a1 Prupe.2G009200_v2.0.a1 Prupe.2G009300_v2.0.a1 Prupe.2G009400_v2.0.a1 Prupe.3G109100_v2.0.a1 Prupe.3G109200_v2.0.a1 Prupe.3G109400_v2.0.a1 Prupe.3G109500_v2.0.a1 Prupe.3G109700_v2.0.a1 Prupe.3G203300_v2.0.a1 Prupe.3G203600_v2.0.a1 Prupe.3G203900_v2.0.a1 Prupe.3G204000_v2.0.a1 Prupe.3G204100_v2.0.a1 Prupe.3G204200_v2.0.a1
pyrus_communis pycom09g04480 pycom09g04490 pycom09g04500 pycom12g13680
rosa_chinensis RchiOBHm_Chr1g0323871 RchiOBHm_Chr2g0156921 RchiOBHm_Chr2g0159061 RchiOBHm_Chr6g0246271 RchiOBHm_Chr6g0246281
rosa_laevigata RLG00000015266 RLG00000020954 RLG00000021134 RLG00000030246 RLG00000030250 RLG00000030295
rosa_multiflora Rmu_co8098394.1_g000001 Rmu_co8404671.1_g000001 Rmu_sc0000507.1_g000021 Rmu_sc0001066.1_g000011 Rmu_sc0001066.1_g000015 Rmu_sc0009451.1_g000001 Rmu_ssc0000408.1_g000005
rosa_roxburghii Rroxscaffold_2G00090810 Rroxscaffold_2G00092580 Rroxscaffold_4G00326280 Rroxscaffold_7G00214720
rosa_rugosa Rorug01G0040400 Rorug02G0457200 Rorug05G0520000
rosa_samantha Rh1AG057700 Rh1BG048800 Rh1CG059100 Rh1DG063000 Rh2AG522900 Rh2BG536200 Rh2BG553200 Rh2CG507800 Rh2DG545200 Rh6AG034100 Rh6BG029300 Rh6DG028700
rosa_wichuraiana Rw0G023110 Rw1G004930 Rw2G043170 Rw2G044730 Rw6G002760 Rw6G002920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 680, 753
AccB1I GGYRCC 2 cut(s) 680, 753
AccB7I CCANNNNNTGG 3 cut(s) 290, 725, 857
AccII CGCG 2 cut(s) 254, 1164
AciI CCGC 1 cut(s) 714
AclI AACGTT 1 cut(s) 705
AclWI GGATC 2 cut(s) 629, 788
AcoI YGGCCR 1 cut(s) 376
AcsI RAATTY 1 cut(s) 508
AfaI GTAC 7 cut(s) 485, 682, 755, 862, 935, 1103, 1138
AfiI CCNNNNNNNGG 5 cut(s) 290, 310, 725, 776, 857
AgsI TTSAA 4 cut(s) 10, 168, 208, 1000
AjiI CACGTC 1 cut(s) 517
AjnI CCWGG 2 cut(s) 129, 718
AjuI GAANNNNNNNTTGG 2 cut(s) 530, 562
AluBI AGCT 5 cut(s) 62, 262, 857, 996, 1042
AluI AGCT 5 cut(s) 62, 262, 857, 996, 1042
Alw21I GWGCWC 2 cut(s) 536, 956
Alw26I GTCTC 1 cut(s) 568
Alw44I GTGCAC 2 cut(s) 532, 952
AlwI GGATC 2 cut(s) 629, 788
AoxI GGCC 5 cut(s) 376, 721, 839, 1057, 1117
ApaLI GTGCAC 2 cut(s) 532, 952
ApeKI GCWGC 1 cut(s) 1050
ApoI RAATTY 1 cut(s) 508
AseI ATTAAT 1 cut(s) 444
Asp718I GGTACC 2 cut(s) 680, 753
AspS9I GGNCC 3 cut(s) 233, 716, 1118
AsuHPI GGTGA 5 cut(s) 165, 340, 457, 550, 686
AvaII GGWCC 2 cut(s) 233, 716
BaeGI GKGCMC 3 cut(s) 536, 956, 1016
BalI TGGCCA 1 cut(s) 378
BanI GGYRCC 2 cut(s) 680, 753
Bbv12I GWGCWC 2 cut(s) 536, 956
BbvI GCAGC 1 cut(s) 1062
BccI CCATC 6 cut(s) 284, 368, 587, 650, 859, 976
BcgI CGANNNNNNTGC 2 cut(s) 718, 752
BciT130I CCWGG 2 cut(s) 131, 720
BciVI GTATCC 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 568
BfuI GTATCC 1 cut(s) 307
BisI GCNGC 1 cut(s) 1051
BlsI GCNGC 1 cut(s) 1052
BmcAI AGTACT 1 cut(s) 935
Bme1390I CCNGG 2 cut(s) 131, 720
Bme18I GGWCC 2 cut(s) 233, 716
BmgBI CACGTC 1 cut(s) 517
BmgT120I GGNCC 3 cut(s) 233, 716, 1118
BmiI GGNNCC 7 cut(s) 246, 282, 682, 743, 755, 947, 966
BmrFI CCNGG 2 cut(s) 131, 720
BmrI ACTGGG 2 cut(s) 627, 660
BmsI GCATC 4 cut(s) 62, 145, 636, 744
BmuI ACTGGG 2 cut(s) 627, 660
BpmI CTGGAG 1 cut(s) 267
BsaBI GATNNNNATC 2 cut(s) 626, 785
BsaJI CCNNGG 7 cut(s) 129, 265, 379, 724, 745, 941, 1114
Bsc4I CCNNNNNNNGG 5 cut(s) 290, 310, 725, 776, 857
Bse118I RCCGGY 1 cut(s) 342
Bse1I ACTGG 5 cut(s) 29, 622, 655, 949, 1111
Bse3DI GCAATG 1 cut(s) 994
Bse8I GATNNNNATC 2 cut(s) 626, 785
BseBI CCWGG 2 cut(s) 131, 720
BseDI CCNNGG 7 cut(s) 129, 265, 379, 724, 745, 941, 1114
BseGI GGATG 3 cut(s) 53, 661, 968
BseJI GATNNNNATC 2 cut(s) 626, 785
BseLI CCNNNNNNNGG 5 cut(s) 290, 310, 725, 776, 857
BseMI GCAATG 1 cut(s) 994
BseMII CTCAG 2 cut(s) 579, 882
BseNI ACTGG 5 cut(s) 29, 622, 655, 949, 1111
BseSI GKGCMC 3 cut(s) 536, 956, 1016
BseXI GCAGC 1 cut(s) 1062
BsgI GTGCAG 1 cut(s) 781
Bsh1236I CGCG 2 cut(s) 254, 1164
BshFI GGCC 5 cut(s) 378, 723, 841, 1059, 1119
BshNI GGYRCC 2 cut(s) 680, 753
BsiHKAI GWGCWC 2 cut(s) 536, 956
BsiSI CCGG 1 cut(s) 343
BslI CCNNNNNNNGG 5 cut(s) 290, 310, 725, 776, 857
BsmAI GTCTC 1 cut(s) 568
BsmBI CGTCTC 1 cut(s) 568
BsmI GAATGC 1 cut(s) 545
BsnI GGCC 5 cut(s) 378, 723, 841, 1059, 1119
Bsp1286I GDGCHC 3 cut(s) 536, 956, 1016
Bsp143I GATC 3 cut(s) 621, 780, 981
Bsp19I CCATGG 2 cut(s) 724, 941
BspACI CCGC 1 cut(s) 714
BspANI GGCC 5 cut(s) 378, 723, 841, 1059, 1119
BspCNI CTCAG 2 cut(s) 578, 881
BspFNI CGCG 2 cut(s) 254, 1164
BspLI GGNNCC 7 cut(s) 246, 282, 682, 743, 755, 947, 966
BspPI GGATC 2 cut(s) 629, 788
BspT107I GGYRCC 2 cut(s) 680, 753
BsrDI GCAATG 1 cut(s) 994
BsrFI RCCGGY 1 cut(s) 342
BsrI ACTGG 5 cut(s) 29, 622, 655, 949, 1111
BssAI RCCGGY 1 cut(s) 342
BssECI CCNNGG 7 cut(s) 129, 265, 379, 724, 745, 941, 1114
BssMI GATC 3 cut(s) 621, 780, 981
BssT1I CCWWGG 6 cut(s) 265, 379, 724, 745, 941, 1114
Bst2UI CCWGG 2 cut(s) 131, 720
Bst4CI ACNGT 3 cut(s) 76, 562, 680
BstAPI GCANNNNNTGC 1 cut(s) 1193
BstC8I GCNNGC 2 cut(s) 279, 843
BstDEI CTNAG 3 cut(s) 565, 868, 1082
BstDSI CCRYGG 2 cut(s) 724, 941
BstEII GGTNACC 1 cut(s) 908
BstF5I GGATG 3 cut(s) 53, 661, 968
BstFNI CGCG 2 cut(s) 254, 1164
BstKTI GATC 3 cut(s) 624, 783, 984
BstMAI GTCTC 1 cut(s) 568
BstMBI GATC 3 cut(s) 621, 780, 981
BstMWI GCNNNNNNNGC 8 cut(s) 59, 251, 720, 741, 863, 993, 1056, 1193
BstNI CCWGG 2 cut(s) 131, 720
BstNSI RCATGY 1 cut(s) 162
BstPI GGTNACC 1 cut(s) 908
BstSCI CCNGG 2 cut(s) 129, 718
BstSLI GKGCMC 3 cut(s) 536, 956, 1016
BstUI CGCG 2 cut(s) 254, 1164
BstV1I GCAGC 1 cut(s) 1062
BsuI GTATCC 1 cut(s) 307
BsuRI GGCC 5 cut(s) 378, 723, 841, 1059, 1119
BtgI CCRYGG 2 cut(s) 724, 941
BtrI CACGTC 1 cut(s) 517
BtsCI GGATG 3 cut(s) 53, 661, 968
BtsIMutI CAGTG 4 cut(s) 81, 615, 956, 1104
Cac8I GCNNGC 2 cut(s) 279, 843
Cfr10I RCCGGY 1 cut(s) 342
Cfr13I GGNCC 3 cut(s) 233, 716, 1118
Csp6I GTAC 7 cut(s) 484, 681, 754, 861, 934, 1102, 1137
CspCI CAANNNNNGTGG 2 cut(s) 1012, 1047
CviAII CATG 6 cut(s) 159, 725, 837, 895, 942, 1065
CviQI GTAC 7 cut(s) 484, 681, 754, 861, 934, 1102, 1137
DdeI CTNAG 3 cut(s) 565, 868, 1082
DpnI GATC 3 cut(s) 623, 782, 983
DpnII GATC 3 cut(s) 621, 780, 981
DraI TTTAAA 2 cut(s) 229, 1098
EaeI YGGCCR 1 cut(s) 376
Eco130I CCWWGG 6 cut(s) 265, 379, 724, 745, 941, 1114
Eco147I AGGCCT 1 cut(s) 1059
Eco47I GGWCC 2 cut(s) 233, 716
Eco91I GGTNACC 1 cut(s) 908
EcoO109I RGGNCCY 2 cut(s) 233, 1118
EcoO65I GGTNACC 1 cut(s) 908
EcoRII CCWGG 2 cut(s) 129, 718
EcoT14I CCWWGG 6 cut(s) 265, 379, 724, 745, 941, 1114
EcoT22I ATGCAT 1 cut(s) 160
ErhI CCWWGG 6 cut(s) 265, 379, 724, 745, 941, 1114
Esp3I CGTCTC 1 cut(s) 568
FaeI CATG 6 cut(s) 162, 728, 840, 898, 945, 1068
FalI AAGNNNNNCTT 2 cut(s) 1107, 1139
FatI CATG 6 cut(s) 158, 724, 836, 894, 941, 1064
Fnu4HI GCNGC 1 cut(s) 1051
FokI GGATG 3 cut(s) 40, 668, 955
Fsp4HI GCNGC 1 cut(s) 1051
GluI GCNGC 1 cut(s) 1051
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 5 cut(s) 378, 723, 841, 1059, 1119
HapII CCGG 1 cut(s) 343
Hin1II CATG 6 cut(s) 162, 728, 840, 898, 945, 1068
HindIII AAGCTT 1 cut(s) 1040
HinfI GANTC 3 cut(s) 597, 635, 828
HpaII CCGG 1 cut(s) 343
HphI GGTGA 5 cut(s) 165, 340, 457, 550, 686
Hpy166II GTNNAC 4 cut(s) 182, 534, 954, 1104
Hpy188I TCNGA 2 cut(s) 121, 871
Hpy188III TCNNGA 3 cut(s) 474, 739, 790
Hpy8I GTNNAC 4 cut(s) 182, 534, 954, 1104
HpyAV CCTTC 3 cut(s) 304, 744, 754
HpyCH4III ACNGT 3 cut(s) 76, 562, 680
HpyCH4IV ACGT 4 cut(s) 516, 610, 696, 705
HpyF10VI GCNNNNNNNGC 8 cut(s) 59, 251, 720, 741, 863, 993, 1056, 1193
HpyF3I CTNAG 3 cut(s) 565, 868, 1082
HpySE526I ACGT 4 cut(s) 516, 610, 696, 705
Hsp92II CATG 6 cut(s) 162, 728, 840, 898, 945, 1068
KpnI GGTACC 2 cut(s) 684, 757
Kzo9I GATC 3 cut(s) 621, 780, 981
LmnI GCTCC 5 cut(s) 250, 267, 286, 383, 741
Lsp1109I GCAGC 1 cut(s) 1062
LweI GCATC 4 cut(s) 62, 145, 636, 744
MaeII ACGT 4 cut(s) 516, 610, 696, 705
MaeIII GTNAC 7 cut(s) 85, 674, 697, 706, 908, 1085, 1165
MalI GATC 3 cut(s) 623, 782, 983
MboI GATC 3 cut(s) 621, 780, 981
MboII GAAGA 1 cut(s) 776
MfeI CAATTG 1 cut(s) 669
MhlI GDGCHC 3 cut(s) 536, 956, 1016
MlsI TGGCCA 1 cut(s) 378
MluCI AATT 7 cut(s) 387, 424, 445, 469, 477, 508, 669
MluNI TGGCCA 1 cut(s) 378
MlyI GAGTC 1 cut(s) 629
MnlI CCTC 7 cut(s) 444, 877, 877, 929, 1131, 1138, 1185
Mox20I TGGCCA 1 cut(s) 378
Mph1103I ATGCAT 1 cut(s) 160
MscI TGGCCA 1 cut(s) 378
MseI TTAA 6 cut(s) 228, 444, 585, 900, 978, 1097
MslI CAYNNNNRTG 1 cut(s) 519
Msp20I TGGCCA 1 cut(s) 378
MspA1I CMGCKG 1 cut(s) 857
MspI CCGG 1 cut(s) 343
MspR9I CCNGG 2 cut(s) 131, 720
MunI CAATTG 1 cut(s) 669
Mva1269I GAATGC 1 cut(s) 545
MvaI CCWGG 2 cut(s) 131, 720
MvnI CGCG 2 cut(s) 254, 1164
MwoI GCNNNNNNNGC 8 cut(s) 59, 251, 720, 741, 863, 993, 1056, 1193
NcoI CCATGG 2 cut(s) 724, 941
NdeII GATC 3 cut(s) 621, 780, 981
NlaIII CATG 6 cut(s) 162, 728, 840, 898, 945, 1068
NlaIV GGNNCC 7 cut(s) 246, 282, 682, 743, 755, 947, 966
NmuCI GTSAC 5 cut(s) 85, 674, 697, 1085, 1165
NsiI ATGCAT 1 cut(s) 160
NspI RCATGY 1 cut(s) 162
PceI AGGCCT 1 cut(s) 1059
PcsI WCGNNNNNNNCGW 1 cut(s) 702
PctI GAATGC 1 cut(s) 545
PfeI GAWTC 2 cut(s) 597, 828
PflMI CCANNNNNTGG 3 cut(s) 290, 725, 857
PkrI GCNGC 1 cut(s) 1052
PleI GAGTC 1 cut(s) 629
PpsI GAGTC 1 cut(s) 629
PpuMI RGGWCCY 1 cut(s) 233
PshBI ATTAAT 1 cut(s) 444
Psp1406I AACGTT 1 cut(s) 705
Psp5II RGGWCCY 1 cut(s) 233
Psp6I CCWGG 2 cut(s) 129, 718
PspEI GGTNACC 1 cut(s) 908
PspGI CCWGG 2 cut(s) 129, 718
PspN4I GGNNCC 7 cut(s) 246, 282, 682, 743, 755, 947, 966
PspPI GGNCC 3 cut(s) 233, 716, 1118
PspPPI RGGWCCY 1 cut(s) 233
PvuII CAGCTG 1 cut(s) 857
RsaI GTAC 7 cut(s) 485, 682, 755, 862, 935, 1103, 1138
RsaNI GTAC 7 cut(s) 484, 681, 754, 861, 934, 1102, 1137
RseI CAYNNNNRTG 1 cut(s) 519
SaqAI TTAA 6 cut(s) 228, 444, 585, 900, 978, 1097
SatI GCNGC 1 cut(s) 1051
Sau3AI GATC 3 cut(s) 621, 780, 981
Sau96I GGNCC 3 cut(s) 233, 716, 1118
ScaI AGTACT 1 cut(s) 935
SchI GAGTC 1 cut(s) 629
ScrFI CCNGG 2 cut(s) 131, 720
SduI GDGCHC 3 cut(s) 536, 956, 1016
SfaNI GCATC 4 cut(s) 62, 145, 636, 744
SinI GGWCC 2 cut(s) 233, 716
SmiMI CAYNNNNRTG 1 cut(s) 519
Sse9I AATT 7 cut(s) 387, 424, 445, 469, 477, 508, 669
SseBI AGGCCT 1 cut(s) 1059
SsiI CCGC 1 cut(s) 714
SspI AATATT 1 cut(s) 273
StuI AGGCCT 1 cut(s) 1059
StyD4I CCNGG 2 cut(s) 129, 718
StyI CCWWGG 6 cut(s) 265, 379, 724, 745, 941, 1114
TaaI ACNGT 3 cut(s) 76, 562, 680
TaiI ACGT 4 cut(s) 519, 613, 699, 708
TaqI TCGA 1 cut(s) 330
TasI AATT 7 cut(s) 387, 424, 445, 469, 477, 508, 669
TatI WGTACW 4 cut(s) 483, 933, 1101, 1136
TfiI GAWTC 2 cut(s) 597, 828
Tru1I TTAA 6 cut(s) 228, 444, 585, 900, 978, 1097
Tru9I TTAA 6 cut(s) 228, 444, 585, 900, 978, 1097
TscAI CASTG 4 cut(s) 81, 622, 956, 1111
TseFI GTSAC 5 cut(s) 85, 674, 697, 1085, 1165
TseI GCWGC 1 cut(s) 1050
Tsp45I GTSAC 5 cut(s) 85, 674, 697, 1085, 1165
TspDTI ATGAA 1 cut(s) 451
TspRI CASTG 4 cut(s) 81, 622, 956, 1111
Van91I CCANNNNNTGG 3 cut(s) 290, 725, 857
VneI GTGCAC 2 cut(s) 532, 952
VpaK11BI GGWCC 2 cut(s) 233, 716
VspI ATTAAT 1 cut(s) 444
XapI RAATTY 1 cut(s) 508
XceI RCATGY 1 cut(s) 162
ZrmI AGTACT 1 cut(s) 935
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.