Rmu_sc0001066.1_g000011

Exopolygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001066.1
OG0000434
Physical Location & Seq
Forward (+)
63789 .. 64679
891 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001066.1_g000011.1.cds

Sequence Viewer

Length: 891 bp
atgtggattaaatggacattgggcaaagaagtgtactgcatcccaaaatgttgcaaacgcatacaagatgtattcgccaacaccagcatcggaactggagatgattgtatttccatcggtgatgggacttcacaacttaaatttaccaacgtgacttgcggaccaggccatggcataagcattggaagcctcggagggcatcgcgatgaacaacctgtaactggcgtcataatcaagaatgtaacattcaataatacgcagaatggtgcaagaatcaagacttggccggcctcatatgccgggcttgtgtcagatatacactatgaggatattaccatggttaatgtcagaaacccgatcattatagaccaagagtactgcccatggaatttgtgcaacaagcagattccttcaaaagttaagatcagtaatgtgagcatcaagaacattaaaggcacgtccacaactccgcatgcggtaaattttatgtgtagcaggagcgtgccatgcgagaatgtggatatttccggcattgatctcacgtatactggacacaaaggactaattaattcacattgctccaatgtcaaactccctacgattgttaacgtgacaaaggctcttgcttgtggtaaccatccaccaataattacatcaaaggaccactccaagagtcatacttcaacaattagtcgatcaaagaattaccagaccgagacgagaaaccagattgattctgttgtagggaatgagccaaccagaggtcatcatcgtaagtatggtctgattgcgacgtcctcggccccagaaagagatgattacttttcaacagtgtcgtcctccgctccaaagggtcgcagtacttatgggtggctacaaccgatgccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

296

Amino Acids

32.38

Weight (kDa)

8.99

Isoelectric Point (pI)

29.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07820 AT3G07830 AT3G07840 AT5G48140
fragaria_vesca FvH4_1g26811 FvH4_2g02350 FvH4_6g41380 FvH4_6g41380 FvH4_6g41380 FvH4_6g41430 FvH4_6g41740 FvH4_6g43060 FvH4_7g02910
malus_domestica MD00G1117700.v1.1 MD00G1117800.v1.1 MD00G1117900.v1.1 MD09G1120000.v1.1 MD09G1120100.v1.1 MD09G1120200.v1.1 MD09G1120300.v1.1 MD12G1142000.v1.1 MD13G1218300.v1.1 MD13G1220100.v1.1 MD13G1220200.v1.1 MD16G1223300.v1.1 MD16G1223500.v1.1 MD16G1223600.v1.1 MD17G1110800.v1.1
prunus_persica Prupe.1G044900_v2.0.a1 Prupe.1G045000_v2.0.a1 Prupe.1G167700_v2.0.a1 Prupe.2G005600_v2.0.a1 Prupe.2G005700_v2.0.a1 Prupe.2G008600_v2.0.a1 Prupe.2G009200_v2.0.a1 Prupe.2G009300_v2.0.a1 Prupe.2G009400_v2.0.a1 Prupe.3G109100_v2.0.a1 Prupe.3G109200_v2.0.a1 Prupe.3G109400_v2.0.a1 Prupe.3G109500_v2.0.a1 Prupe.3G109700_v2.0.a1 Prupe.3G203300_v2.0.a1 Prupe.3G203600_v2.0.a1 Prupe.3G203900_v2.0.a1 Prupe.3G204000_v2.0.a1 Prupe.3G204100_v2.0.a1 Prupe.3G204200_v2.0.a1
pyrus_communis pycom09g04480 pycom09g04490 pycom09g04500 pycom12g13680
rosa_chinensis RchiOBHm_Chr1g0323871 RchiOBHm_Chr2g0156921 RchiOBHm_Chr2g0159061 RchiOBHm_Chr6g0246271 RchiOBHm_Chr6g0246281
rosa_laevigata RLG00000015266 RLG00000020954 RLG00000021134 RLG00000030246 RLG00000030250 RLG00000030295
rosa_multiflora Rmu_co8098394.1_g000001 Rmu_co8404671.1_g000001 Rmu_sc0000507.1_g000021 Rmu_sc0001066.1_g000011 Rmu_sc0001066.1_g000015 Rmu_sc0009451.1_g000001 Rmu_ssc0000408.1_g000005
rosa_roxburghii Rroxscaffold_2G00090810 Rroxscaffold_2G00092580 Rroxscaffold_4G00326280 Rroxscaffold_7G00214720
rosa_rugosa Rorug01G0040400 Rorug02G0457200 Rorug05G0520000
rosa_samantha Rh1AG057700 Rh1BG048800 Rh1CG059100 Rh1DG063000 Rh2AG522900 Rh2BG536200 Rh2BG553200 Rh2CG507800 Rh2DG545200 Rh6AG034100 Rh6BG029300 Rh6DG028700
rosa_wichuraiana Rw0G023110 Rw1G004930 Rw2G043170 Rw2G044730 Rw6G002760 Rw6G002920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 797
AccB7I CCANNNNNTGG 1 cut(s) 170
AccBSI CCGCTC 1 cut(s) 845
AccI GTMKAC 1 cut(s) 545
AccII CGCG 1 cut(s) 204
AciI CCGC 4 cut(s) 159, 470, 476, 843
AcoI YGGCCR 1 cut(s) 284
AcsI RAATTY 3 cut(s) 140, 388, 481
AcyI GRCGYC 2 cut(s) 225, 794
AfaI GTAC 3 cut(s) 35, 377, 862
AfiI CCNNNNNNNGG 3 cut(s) 170, 221, 761
AgsI TTSAA 4 cut(s) 250, 414, 684, 828
AjiI CACGTC 1 cut(s) 459
AjnI CCWGG 1 cut(s) 163
AjuI GAANNNNNNNTTGG 2 cut(s) 265, 297
Alw26I GTCTC 1 cut(s) 710
AoxI GGCC 4 cut(s) 166, 284, 288, 801
ApoI RAATTY 3 cut(s) 140, 388, 481
AseI ATTAAT 1 cut(s) 567
AspS9I GGNCC 3 cut(s) 161, 661, 802
AsuC2I CCSGG 1 cut(s) 301
AsuHPI GGTGA 1 cut(s) 131
AvaII GGWCC 2 cut(s) 161, 661
BccI CCATC 3 cut(s) 116, 122, 645
BciT130I CCWGG 1 cut(s) 165
BcnI CCSGG 1 cut(s) 301
BcoDI GTCTC 1 cut(s) 710
BmcAI AGTACT 2 cut(s) 377, 862
Bme1390I CCNGG 2 cut(s) 165, 301
Bme18I GGWCC 2 cut(s) 161, 661
BmgBI CACGTC 1 cut(s) 459
BmgT120I GGNCC 3 cut(s) 161, 661, 802
BmiI GGNNCC 1 cut(s) 804
BmrFI CCNGG 2 cut(s) 165, 301
BmsI GCATC 5 cut(s) 48, 96, 208, 447, 873
BpmI CTGGAG 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 301
BsaAI YACGTR 1 cut(s) 543
BsaHI GRCGYC 2 cut(s) 225, 794
BsaJI CCNNGG 5 cut(s) 169, 190, 336, 383, 798
Bsc4I CCNNNNNNNGG 3 cut(s) 170, 221, 761
Bse118I RCCGGY 1 cut(s) 286
Bse1I ACTGG 3 cut(s) 100, 226, 553
Bse3DI GCAATG 1 cut(s) 574
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 5 cut(s) 169, 190, 336, 383, 798
BseGI GGATG 2 cut(s) 39, 637
BseLI CCNNNNNNNGG 3 cut(s) 170, 221, 761
BseMI GCAATG 1 cut(s) 574
BseNI ACTGG 3 cut(s) 100, 226, 553
Bsh1236I CGCG 1 cut(s) 204
BshFI GGCC 4 cut(s) 168, 286, 290, 803
BsiSI CCGG 3 cut(s) 287, 300, 528
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 3 cut(s) 170, 221, 761
BsmAI GTCTC 1 cut(s) 710
BsmBI CGTCTC 1 cut(s) 710
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 4 cut(s) 168, 286, 290, 803
Bsp143I GATC 4 cut(s) 357, 423, 535, 695
Bsp19I CCATGG 3 cut(s) 169, 336, 383
Bsp68I TCGCGA 1 cut(s) 204
BspACI CCGC 4 cut(s) 159, 470, 476, 843
BspANI GGCC 4 cut(s) 168, 286, 290, 803
BspFNI CGCG 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 804
BsrBI CCGCTC 1 cut(s) 845
BsrDI GCAATG 1 cut(s) 574
BsrFI RCCGGY 1 cut(s) 286
BsrI ACTGG 3 cut(s) 100, 226, 553
BssAI RCCGGY 1 cut(s) 286
BssECI CCNNGG 5 cut(s) 169, 190, 336, 383, 798
BssMI GATC 4 cut(s) 357, 423, 535, 695
BssNAI GTATAC 1 cut(s) 546
BssNI GRCGYC 2 cut(s) 225, 794
BssT1I CCWWGG 3 cut(s) 169, 336, 383
Bst1107I GTATAC 1 cut(s) 546
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 832
BstACI GRCGYC 2 cut(s) 225, 794
BstBAI YACGTR 1 cut(s) 543
BstC8I GCNNGC 3 cut(s) 288, 474, 503
BstDSI CCRYGG 3 cut(s) 169, 336, 383
BstEII GGTNACC 1 cut(s) 632
BstF5I GGATG 2 cut(s) 39, 637
BstFNI CGCG 1 cut(s) 204
BstKTI GATC 4 cut(s) 360, 426, 538, 698
BstMAI GTCTC 1 cut(s) 710
BstMBI GATC 4 cut(s) 357, 423, 535, 695
BstMWI GCNNNNNNNGC 4 cut(s) 165, 186, 296, 507
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 476
BstPI GGTNACC 1 cut(s) 632
BstSCI CCNGG 2 cut(s) 163, 299
BstUI CGCG 1 cut(s) 204
BstZ17I GTATAC 1 cut(s) 546
BsuRI GGCC 4 cut(s) 168, 286, 290, 803
BtgI CCRYGG 3 cut(s) 169, 336, 383
BtgZI GCGATG 2 cut(s) 185, 219
BtrI CACGTC 1 cut(s) 459
BtsCI GGATG 2 cut(s) 39, 637
BtsIMutI CAGTG 1 cut(s) 837
BtuMI TCGCGA 1 cut(s) 204
Cac8I GCNNGC 3 cut(s) 288, 474, 503
Cfr10I RCCGGY 1 cut(s) 286
Cfr13I GGNCC 3 cut(s) 161, 661, 802
CseI GACGC 1 cut(s) 214
Csp6I GTAC 3 cut(s) 34, 376, 861
CviAII CATG 5 cut(s) 170, 337, 384, 473, 507
CviJI RGCY 9 cut(s) 168, 189, 286, 290, 304, 620, 754, 803, 874
CviKI_1 RGCY 9 cut(s) 168, 189, 286, 290, 304, 620, 754, 803, 874
CviQI GTAC 3 cut(s) 34, 376, 861
DpnI GATC 4 cut(s) 359, 425, 537, 697
DpnII GATC 4 cut(s) 357, 423, 535, 695
EaeI YGGCCR 1 cut(s) 284
Eco130I CCWWGG 3 cut(s) 169, 336, 383
Eco47I GGWCC 2 cut(s) 161, 661
Eco91I GGTNACC 1 cut(s) 632
EcoO65I GGTNACC 1 cut(s) 632
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 3 cut(s) 169, 336, 383
ErhI CCWWGG 3 cut(s) 169, 336, 383
Esp3I CGTCTC 1 cut(s) 710
FaeI CATG 5 cut(s) 173, 340, 387, 476, 510
FaqI GGGAC 1 cut(s) 139
FatI CATG 5 cut(s) 169, 336, 383, 472, 506
FauNDI CATATG 1 cut(s) 295
FblI GTMKAC 1 cut(s) 545
FokI GGATG 2 cut(s) 26, 624
FseI GGCCGGCC 1 cut(s) 290
GsuI CTGGAG 1 cut(s) 117
HaeIII GGCC 4 cut(s) 168, 286, 290, 803
HapII CCGG 3 cut(s) 287, 300, 528
HgaI GACGC 1 cut(s) 214
Hin1I GRCGYC 2 cut(s) 225, 794
Hin1II CATG 5 cut(s) 173, 340, 387, 476, 510
HincII GTYRAC 1 cut(s) 607
HindII GTYRAC 1 cut(s) 607
HinfI GANTC 4 cut(s) 273, 406, 673, 734
HpaI GTTAAC 1 cut(s) 607
HpaII CCGG 3 cut(s) 287, 300, 528
HphI GGTGA 1 cut(s) 131
Hpy166II GTNNAC 4 cut(s) 34, 462, 546, 607
Hpy188I TCNGA 5 cut(s) 92, 194, 313, 350, 786
Hpy188III TCNNGA 4 cut(s) 203, 235, 277, 442
Hpy8I GTNNAC 4 cut(s) 34, 462, 546, 607
Hpy99I CGWCG 1 cut(s) 796
HpyAV CCTTC 1 cut(s) 420
HpyCH4III ACNGT 1 cut(s) 832
HpyCH4IV ACGT 5 cut(s) 150, 458, 542, 609, 794
HpyCH4V TGCA 4 cut(s) 39, 54, 269, 396
HpyF10VI GCNNNNNNNGC 4 cut(s) 165, 186, 296, 507
HpySE526I ACGT 5 cut(s) 150, 458, 542, 609, 794
Hsp92I GRCGYC 2 cut(s) 225, 794
Hsp92II CATG 5 cut(s) 173, 340, 387, 476, 510
KroI GCCGGC 1 cut(s) 286
KroNI GCCGGC 1 cut(s) 288
KspAI GTTAAC 1 cut(s) 607
Kzo9I GATC 4 cut(s) 357, 423, 535, 695
LmnI GCTCC 3 cut(s) 498, 584, 850
LweI GCATC 5 cut(s) 48, 96, 208, 447, 873
MaeII ACGT 5 cut(s) 150, 458, 542, 609, 794
MaeIII GTNAC 5 cut(s) 151, 217, 241, 610, 632
MalI GATC 4 cut(s) 359, 425, 537, 697
MbiI CCGCTC 1 cut(s) 845
MboI GATC 4 cut(s) 357, 423, 535, 695
MluCI AATT 8 cut(s) 140, 388, 481, 564, 568, 648, 687, 703
MlyI GAGTC 1 cut(s) 682
MnlI CCTC 7 cut(s) 188, 200, 301, 319, 755, 808, 850
MroNI GCCGGC 1 cut(s) 286
MseI TTAA 7 cut(s) 9, 138, 342, 420, 450, 567, 606
MslI CAYNNNNRTG 1 cut(s) 204
MspI CCGG 3 cut(s) 287, 300, 528
MspR9I CCNGG 2 cut(s) 165, 301
MvaI CCWGG 1 cut(s) 165
MvnI CGCG 1 cut(s) 204
MwoI GCNNNNNNNGC 4 cut(s) 165, 186, 296, 507
NaeI GCCGGC 1 cut(s) 288
NciI CCSGG 1 cut(s) 301
NcoI CCATGG 3 cut(s) 169, 336, 383
NdeI CATATG 1 cut(s) 295
NdeII GATC 4 cut(s) 357, 423, 535, 695
NgoMIV GCCGGC 1 cut(s) 286
NlaIII CATG 5 cut(s) 173, 340, 387, 476, 510
NlaIV GGNNCC 1 cut(s) 804
NmeAIII GCCGAG 1 cut(s) 779
NmuCI GTSAC 2 cut(s) 151, 610
NruI TCGCGA 1 cut(s) 204
NspI RCATGY 1 cut(s) 476
PaeI GCATGC 1 cut(s) 476
PdiI GCCGGC 1 cut(s) 288
PfeI GAWTC 3 cut(s) 273, 406, 734
PflMI CCANNNNNTGG 1 cut(s) 170
PleI GAGTC 1 cut(s) 681
PpsI GAGTC 1 cut(s) 681
Ppu21I YACGTR 1 cut(s) 543
PshBI ATTAAT 1 cut(s) 567
Psp6I CCWGG 1 cut(s) 163
PspEI GGTNACC 1 cut(s) 632
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 804
PspPI GGNCC 3 cut(s) 161, 661, 802
RigI GGCCGGCC 1 cut(s) 290
RruI TCGCGA 1 cut(s) 204
RsaI GTAC 3 cut(s) 35, 377, 862
RsaNI GTAC 3 cut(s) 34, 376, 861
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 7 cut(s) 9, 138, 342, 420, 450, 567, 606
Sau3AI GATC 4 cut(s) 357, 423, 535, 695
Sau96I GGNCC 3 cut(s) 161, 661, 802
ScaI AGTACT 2 cut(s) 377, 862
SchI GAGTC 1 cut(s) 682
ScrFI CCNGG 2 cut(s) 165, 301
SetI ASST 7 cut(s) 153, 217, 461, 545, 612, 766, 797
SfaNI GCATC 5 cut(s) 48, 96, 208, 447, 873
SinI GGWCC 2 cut(s) 161, 661
SmiMI CAYNNNNRTG 1 cut(s) 204
SphI GCATGC 1 cut(s) 476
Sse9I AATT 8 cut(s) 140, 388, 481, 564, 568, 648, 687, 703
SsiI CCGC 4 cut(s) 159, 470, 476, 843
StyD4I CCNGG 2 cut(s) 163, 299
StyI CCWWGG 3 cut(s) 169, 336, 383
TaaI ACNGT 1 cut(s) 832
TaiI ACGT 5 cut(s) 153, 461, 545, 612, 797
TaqI TCGA 1 cut(s) 694
TaqII GACCGA 1 cut(s) 728
TasI AATT 8 cut(s) 140, 388, 481, 564, 568, 648, 687, 703
TatI WGTACW 3 cut(s) 33, 375, 860
TfiI GAWTC 3 cut(s) 273, 406, 734
Tru1I TTAA 7 cut(s) 9, 138, 342, 420, 450, 567, 606
Tru9I TTAA 7 cut(s) 9, 138, 342, 420, 450, 567, 606
TscAI CASTG 1 cut(s) 837
TseFI GTSAC 2 cut(s) 151, 610
Tsp45I GTSAC 2 cut(s) 151, 610
TspDTI ATGAA 1 cut(s) 222
TspRI CASTG 1 cut(s) 837
Van91I CCANNNNNTGG 1 cut(s) 170
VpaK11BI GGWCC 2 cut(s) 161, 661
VspI ATTAAT 1 cut(s) 567
XapI RAATTY 3 cut(s) 140, 388, 481
XceI RCATGY 1 cut(s) 476
XmiI GTMKAC 1 cut(s) 545
ZraI GACGTC 1 cut(s) 795
ZrmI AGTACT 2 cut(s) 377, 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.