Exopolygalacturonase-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Glyco_hydro_28 | PF00295 | 57 - 369 | 1.5e-101 | Glycosyl hydrolases family 28 |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 20, 735 |
| AccB1I | GGYRCC | 4 cut(s) | 20, 302, 662, 735 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 707 |
| AciI | CCGC | 2 cut(s) | 25, 102 |
| AclWI | GGATC | 2 cut(s) | 75, 338 |
| AcoI | YGGCCR | 2 cut(s) | 385, 1014 |
| AcsI | RAATTY | 1 cut(s) | 490 |
| AcvI | CACGTG | 1 cut(s) | 499 |
| AfaI | GTAC | 8 cut(s) | 22, 280, 631, 737, 781, 917, 997, 1085 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 299, 707, 758 |
| AgsI | TTSAA | 4 cut(s) | 238, 621, 651, 982 |
| AjiI | CACGTC | 1 cut(s) | 94 |
| AjnI | CCWGG | 2 cut(s) | 553, 700 |
| AleI | CACNNNNGTG | 1 cut(s) | 1010 |
| AluBI | AGCT | 5 cut(s) | 31, 234, 401, 839, 978 |
| AluI | AGCT | 5 cut(s) | 31, 234, 401, 839, 978 |
| Alw26I | GTCTC | 1 cut(s) | 630 |
| AlwI | GGATC | 2 cut(s) | 75, 338 |
| AoxI | GGCC | 4 cut(s) | 385, 703, 821, 1014 |
| ApeKI | GCWGC | 2 cut(s) | 548, 836 |
| ApoI | RAATTY | 1 cut(s) | 490 |
| AseI | ATTAAT | 1 cut(s) | 1074 |
| Asp718I | GGTACC | 2 cut(s) | 20, 735 |
| AspLEI | GCGC | 3 cut(s) | 292, 594, 1034 |
| AspS9I | GGNCC | 3 cut(s) | 242, 271, 698 |
| AsuC2I | CCSGG | 1 cut(s) | 18 |
| AsuHPI | GGTGA | 2 cut(s) | 532, 668 |
| AsuNHI | GCTAGC | 1 cut(s) | 839 |
| AvaII | GGWCC | 3 cut(s) | 242, 271, 698 |
| BalI | TGGCCA | 1 cut(s) | 387 |
| BanI | GGYRCC | 4 cut(s) | 20, 302, 662, 735 |
| BbrPI | CACGTG | 1 cut(s) | 499 |
| BbsI | GAAGAC | 1 cut(s) | 993 |
| BbvCI | CCTCAGC | 1 cut(s) | 785 |
| BbvI | GCAGC | 2 cut(s) | 535, 848 |
| BccI | CCATC | 3 cut(s) | 377, 569, 653 |
| BceAI | ACGGC | 2 cut(s) | 316, 1001 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 162, 196 |
| BciT130I | CCWGG | 2 cut(s) | 555, 702 |
| BclI | TGATCA | 1 cut(s) | 907 |
| BcnI | CCSGG | 1 cut(s) | 18 |
| BcoDI | GTCTC | 1 cut(s) | 630 |
| BfaI | CTAG | 2 cut(s) | 63, 840 |
| BfmI | CTRYAG | 1 cut(s) | 834 |
| BfoI | RGCGCY | 1 cut(s) | 595 |
| BglII | AGATCT | 1 cut(s) | 59 |
| BisI | GCNGC | 2 cut(s) | 549, 837 |
| BlsI | GCNGC | 2 cut(s) | 550, 838 |
| BmcAI | AGTACT | 1 cut(s) | 917 |
| Bme1390I | CCNGG | 3 cut(s) | 18, 555, 702 |
| Bme18I | GGWCC | 3 cut(s) | 242, 271, 698 |
| BmgBI | CACGTC | 1 cut(s) | 94 |
| BmgT120I | GGNCC | 3 cut(s) | 242, 271, 698 |
| BmiI | GGNNCC | 5 cut(s) | 22, 255, 304, 664, 737 |
| BmrFI | CCNGG | 3 cut(s) | 18, 555, 702 |
| BmsI | GCATC | 2 cut(s) | 154, 182 |
| BmtI | GCTAGC | 1 cut(s) | 843 |
| BpiI | GAAGAC | 1 cut(s) | 993 |
| Bpu10I | CCTNAGC | 1 cut(s) | 785 |
| BpuEI | CTTGAG | 2 cut(s) | 65, 1064 |
| BpuMI | CCSGG | 1 cut(s) | 18 |
| BsaAI | YACGTR | 3 cut(s) | 327, 479, 499 |
| BsaJI | CCNNGG | 6 cut(s) | 180, 274, 388, 706, 923, 1035 |
| BsaWI | WCCGGW | 1 cut(s) | 1009 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 549, 579 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 299, 707, 758 |
| Bse118I | RCCGGY | 1 cut(s) | 77 |
| Bse3DI | GCAATG | 1 cut(s) | 976 |
| BseBI | CCWGG | 2 cut(s) | 555, 702 |
| BseDI | CCNNGG | 6 cut(s) | 180, 274, 388, 706, 923, 1035 |
| BseGI | GGATG | 1 cut(s) | 472 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 299, 707, 758 |
| BseMI | GCAATG | 1 cut(s) | 976 |
| BseMII | CTCAG | 3 cut(s) | 152, 799, 864 |
| BseXI | GCAGC | 2 cut(s) | 535, 848 |
| BseYI | CCCAGC | 1 cut(s) | 4 |
| BsgI | GTGCAG | 1 cut(s) | 534 |
| BshFI | GGCC | 4 cut(s) | 387, 705, 823, 1016 |
| BshNI | GGYRCC | 4 cut(s) | 20, 302, 662, 735 |
| BsiSI | CCGG | 3 cut(s) | 17, 78, 1010 |
| BslFI | GGGAC | 1 cut(s) | 223 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 299, 707, 758 |
| BsmAI | GTCTC | 1 cut(s) | 630 |
| BsmBI | CGTCTC | 1 cut(s) | 630 |
| BsmFI | GGGAC | 1 cut(s) | 223 |
| BsnI | GGCC | 4 cut(s) | 387, 705, 823, 1016 |
| Bsp143I | GATC | 5 cut(s) | 59, 67, 330, 907, 963 |
| Bsp19I | CCATGG | 2 cut(s) | 706, 923 |
| BspACI | CCGC | 2 cut(s) | 25, 102 |
| BspANI | GGCC | 4 cut(s) | 387, 705, 823, 1016 |
| BspCNI | CTCAG | 3 cut(s) | 151, 798, 863 |
| BspHI | TCATGA | 2 cut(s) | 34, 876 |
| BspLI | GGNNCC | 5 cut(s) | 22, 255, 304, 664, 737 |
| BspMAI | CTGCAG | 1 cut(s) | 838 |
| BspOI | GCTAGC | 1 cut(s) | 843 |
| BspPI | GGATC | 2 cut(s) | 75, 338 |
| BspT107I | GGYRCC | 4 cut(s) | 20, 302, 662, 735 |
| BsrDI | GCAATG | 1 cut(s) | 976 |
| BsrFI | RCCGGY | 1 cut(s) | 77 |
| BssAI | RCCGGY | 1 cut(s) | 77 |
| BssECI | CCNNGG | 6 cut(s) | 180, 274, 388, 706, 923, 1035 |
| BssMI | GATC | 5 cut(s) | 59, 67, 330, 907, 963 |
| BssT1I | CCWWGG | 5 cut(s) | 274, 388, 706, 923, 1035 |
| Bst2UI | CCWGG | 2 cut(s) | 555, 702 |
| Bst4CI | ACNGT | 4 cut(s) | 544, 779, 803, 1088 |
| BstBAI | YACGTR | 3 cut(s) | 327, 479, 499 |
| BstC8I | GCNNGC | 6 cut(s) | 29, 232, 288, 518, 841, 1030 |
| BstDEI | CTNAG | 4 cut(s) | 138, 684, 785, 850 |
| BstDSI | CCRYGG | 2 cut(s) | 706, 923 |
| BstEII | GGTNACC | 1 cut(s) | 890 |
| BstF5I | GGATG | 1 cut(s) | 472 |
| BstH2I | RGCGCY | 1 cut(s) | 595 |
| BstHHI | GCGC | 3 cut(s) | 292, 594, 1034 |
| BstKTI | GATC | 5 cut(s) | 62, 70, 333, 910, 966 |
| BstMAI | GTCTC | 1 cut(s) | 630 |
| BstMBI | GATC | 5 cut(s) | 59, 67, 330, 907, 963 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 845, 975, 1038 |
| BstNI | CCWGG | 2 cut(s) | 555, 702 |
| BstNSI | RCATGY | 3 cut(s) | 171, 290, 1032 |
| BstPI | GGTNACC | 1 cut(s) | 890 |
| BstSCI | CCNGG | 3 cut(s) | 16, 553, 700 |
| BstSFI | CTRYAG | 1 cut(s) | 834 |
| BstV1I | GCAGC | 2 cut(s) | 535, 848 |
| BstV2I | GAAGAC | 1 cut(s) | 993 |
| BstX2I | RGATCY | 2 cut(s) | 59, 67 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 327, 1012 |
| BstYI | RGATCY | 2 cut(s) | 59, 67 |
| BsuRI | GGCC | 4 cut(s) | 387, 705, 823, 1016 |
| BtgI | CCRYGG | 2 cut(s) | 706, 923 |
| BtrI | CACGTC | 1 cut(s) | 94 |
| BtsCI | GGATG | 1 cut(s) | 472 |
| BtsI | GCAGTG | 1 cut(s) | 843 |
| BtsIMutI | CAGTG | 3 cut(s) | 843, 938, 1093 |
| Cac8I | GCNNGC | 6 cut(s) | 29, 232, 288, 518, 841, 1030 |
| CciI | TCATGA | 2 cut(s) | 34, 876 |
| CfoI | GCGC | 3 cut(s) | 292, 594, 1034 |
| Cfr10I | RCCGGY | 1 cut(s) | 77 |
| Cfr13I | GGNCC | 3 cut(s) | 242, 271, 698 |
| Csp6I | GTAC | 8 cut(s) | 21, 279, 630, 736, 780, 916, 996, 1084 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1069, 1104 |
| CviQI | GTAC | 8 cut(s) | 21, 279, 630, 736, 780, 916, 996, 1084 |
| DdeI | CTNAG | 4 cut(s) | 138, 684, 785, 850 |
| DpnI | GATC | 5 cut(s) | 61, 69, 332, 909, 965 |
| DpnII | GATC | 5 cut(s) | 59, 67, 330, 907, 963 |
| EaeI | YGGCCR | 2 cut(s) | 385, 1014 |
| Eco130I | CCWWGG | 5 cut(s) | 274, 388, 706, 923, 1035 |
| Eco32I | GATATC | 1 cut(s) | 871 |
| Eco47I | GGWCC | 3 cut(s) | 242, 271, 698 |
| Eco72I | CACGTG | 1 cut(s) | 499 |
| Eco91I | GGTNACC | 1 cut(s) | 890 |
| EcoO109I | RGGNCCY | 1 cut(s) | 242 |
| EcoO65I | GGTNACC | 1 cut(s) | 890 |
| EcoRII | CCWGG | 2 cut(s) | 553, 700 |
| EcoRV | GATATC | 1 cut(s) | 871 |
| EcoT14I | CCWWGG | 5 cut(s) | 274, 388, 706, 923, 1035 |
| EcoT22I | ATGCAT | 2 cut(s) | 157, 169 |
| ErhI | CCWWGG | 5 cut(s) | 274, 388, 706, 923, 1035 |
| Esp3I | CGTCTC | 1 cut(s) | 630 |
| FaqI | GGGAC | 1 cut(s) | 223 |
| FauI | CCCGC | 1 cut(s) | 32 |
| FbaI | TGATCA | 1 cut(s) | 907 |
| Fnu4HI | GCNGC | 2 cut(s) | 549, 837 |
| FokI | GGATG | 1 cut(s) | 479 |
| Fsp4HI | GCNGC | 2 cut(s) | 549, 837 |
| FspBI | CTAG | 2 cut(s) | 63, 840 |
| GlaI | GCGC | 3 cut(s) | 291, 593, 1033 |
| GluI | GCNGC | 2 cut(s) | 549, 837 |
| GsaI | CCCAGC | 1 cut(s) | 8 |
| HaeII | RGCGCY | 1 cut(s) | 595 |
| HaeIII | GGCC | 4 cut(s) | 387, 705, 823, 1016 |
| HapII | CCGG | 3 cut(s) | 17, 78, 1010 |
| HhaI | GCGC | 3 cut(s) | 292, 594, 1034 |
| Hin6I | GCGC | 3 cut(s) | 290, 592, 1032 |
| HinP1I | GCGC | 3 cut(s) | 290, 592, 1032 |
| HindIII | AAGCTT | 3 cut(s) | 29, 232, 399 |
| HinfI | GANTC | 4 cut(s) | 617, 762, 810, 928 |
| HpaII | CCGG | 3 cut(s) | 17, 78, 1010 |
| HphI | GGTGA | 2 cut(s) | 532, 668 |
| Hpy166II | GTNNAC | 3 cut(s) | 357, 698, 1124 |
| Hpy188I | TCNGA | 2 cut(s) | 130, 853 |
| Hpy188III | TCNNGA | 6 cut(s) | 35, 448, 814, 877, 911, 961 |
| Hpy8I | GTNNAC | 3 cut(s) | 357, 698, 1124 |
| Hpy99I | CGWCG | 1 cut(s) | 548 |
| HpyAV | CCTTC | 2 cut(s) | 47, 726 |
| HpyCH4III | ACNGT | 4 cut(s) | 544, 779, 803, 1088 |
| HpyCH4IV | ACGT | 7 cut(s) | 93, 326, 478, 498, 794, 998, 1120 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 845, 975, 1038 |
| HpyF3I | CTNAG | 4 cut(s) | 138, 684, 785, 850 |
| HpySE526I | ACGT | 7 cut(s) | 93, 326, 478, 498, 794, 998, 1120 |
| HspAI | GCGC | 3 cut(s) | 290, 592, 1032 |
| KpnI | GGTACC | 2 cut(s) | 24, 739 |
| Ksp22I | TGATCA | 1 cut(s) | 907 |
| Kzo9I | GATC | 5 cut(s) | 59, 67, 330, 907, 963 |
| LmnI | GCTCC | 1 cut(s) | 259 |
| Lsp1109I | GCAGC | 2 cut(s) | 535, 848 |
| LweI | GCATC | 2 cut(s) | 154, 182 |
| MaeI | CTAG | 2 cut(s) | 63, 840 |
| MaeII | ACGT | 7 cut(s) | 93, 326, 478, 498, 794, 998, 1120 |
| MaeIII | GTNAC | 7 cut(s) | 94, 469, 479, 610, 688, 890, 1049 |
| MalI | GATC | 5 cut(s) | 61, 69, 332, 909, 965 |
| MboI | GATC | 5 cut(s) | 59, 67, 330, 907, 963 |
| MboII | GAAGA | 3 cut(s) | 758, 993, 1033 |
| MflI | RGATCY | 2 cut(s) | 59, 67 |
| MlsI | TGGCCA | 1 cut(s) | 387 |
| MluCI | AATT | 3 cut(s) | 124, 490, 826 |
| MluNI | TGGCCA | 1 cut(s) | 387 |
| MmeI | TCCRAC | 2 cut(s) | 556, 822 |
| MnlI | CCTC | 7 cut(s) | 190, 256, 794, 859, 859, 911, 986 |
| Mox20I | TGGCCA | 1 cut(s) | 387 |
| Mph1103I | ATGCAT | 2 cut(s) | 157, 169 |
| MscI | TGGCCA | 1 cut(s) | 387 |
| MseI | TTAA | 3 cut(s) | 567, 606, 1074 |
| MslI | CAYNNNNRTG | 2 cut(s) | 501, 1010 |
| Msp20I | TGGCCA | 1 cut(s) | 387 |
| MspI | CCGG | 3 cut(s) | 17, 78, 1010 |
| MspR9I | CCNGG | 3 cut(s) | 18, 555, 702 |
| MvaI | CCWGG | 2 cut(s) | 555, 702 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 845, 975, 1038 |
| NciI | CCSGG | 1 cut(s) | 18 |
| NcoI | CCATGG | 2 cut(s) | 706, 923 |
| NdeII | GATC | 5 cut(s) | 59, 67, 330, 907, 963 |
| NheI | GCTAGC | 1 cut(s) | 839 |
| NlaIV | GGNNCC | 5 cut(s) | 22, 255, 304, 664, 737 |
| NmeAIII | GCCGAG | 1 cut(s) | 161 |
| NmuCI | GTSAC | 2 cut(s) | 94, 1049 |
| NsiI | ATGCAT | 2 cut(s) | 157, 169 |
| NspI | RCATGY | 3 cut(s) | 171, 290, 1032 |
| OliI | CACNNNNGTG | 1 cut(s) | 1010 |
| PaeI | GCATGC | 2 cut(s) | 290, 1032 |
| PagI | TCATGA | 2 cut(s) | 34, 876 |
| PfeI | GAWTC | 4 cut(s) | 617, 762, 810, 928 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 707 |
| PkrI | GCNGC | 2 cut(s) | 550, 838 |
| PmaCI | CACGTG | 1 cut(s) | 499 |
| PmlI | CACGTG | 1 cut(s) | 499 |
| Ppu21I | YACGTR | 3 cut(s) | 327, 479, 499 |
| PpuMI | RGGWCCY | 1 cut(s) | 242 |
| PshBI | ATTAAT | 1 cut(s) | 1074 |
| Psp5II | RGGWCCY | 1 cut(s) | 242 |
| Psp6I | CCWGG | 2 cut(s) | 553, 700 |
| PspCI | CACGTG | 1 cut(s) | 499 |
| PspEI | GGTNACC | 1 cut(s) | 890 |
| PspFI | CCCAGC | 1 cut(s) | 4 |
| PspGI | CCWGG | 2 cut(s) | 553, 700 |
| PspN4I | GGNNCC | 5 cut(s) | 22, 255, 304, 664, 737 |
| PspPI | GGNCC | 3 cut(s) | 242, 271, 698 |
| PspPPI | RGGWCCY | 1 cut(s) | 242 |
| PstI | CTGCAG | 1 cut(s) | 838 |
| PsuI | RGATCY | 2 cut(s) | 59, 67 |
| RsaI | GTAC | 8 cut(s) | 22, 280, 631, 737, 781, 917, 997, 1085 |
| RsaNI | GTAC | 8 cut(s) | 21, 279, 630, 736, 780, 916, 996, 1084 |
| RseI | CAYNNNNRTG | 2 cut(s) | 501, 1010 |
| SaqAI | TTAA | 3 cut(s) | 567, 606, 1074 |
| SatI | GCNGC | 2 cut(s) | 549, 837 |
| Sau3AI | GATC | 5 cut(s) | 59, 67, 330, 907, 963 |
| Sau96I | GGNCC | 3 cut(s) | 242, 271, 698 |
| ScaI | AGTACT | 1 cut(s) | 917 |
| ScrFI | CCNGG | 3 cut(s) | 18, 555, 702 |
| SfaNI | GCATC | 2 cut(s) | 154, 182 |
| SfcI | CTRYAG | 1 cut(s) | 834 |
| SinI | GGWCC | 3 cut(s) | 242, 271, 698 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 501, 1010 |
| SmlI | CTYRAG | 2 cut(s) | 44, 1079 |
| SmoI | CTYRAG | 2 cut(s) | 44, 1079 |
| SphI | GCATGC | 2 cut(s) | 290, 1032 |
| Sse9I | AATT | 3 cut(s) | 124, 490, 826 |
| SsiI | CCGC | 2 cut(s) | 25, 102 |
| SspMI | CTAG | 2 cut(s) | 63, 840 |
| StyD4I | CCNGG | 3 cut(s) | 16, 553, 700 |
| StyI | CCWWGG | 5 cut(s) | 274, 388, 706, 923, 1035 |
| TaaI | ACNGT | 4 cut(s) | 544, 779, 803, 1088 |
| TaiI | ACGT | 7 cut(s) | 96, 329, 481, 501, 797, 1001, 1123 |
| TaqI | TCGA | 2 cut(s) | 314, 333 |
| TasI | AATT | 3 cut(s) | 124, 490, 826 |
| TatI | WGTACW | 2 cut(s) | 915, 1083 |
| TfiI | GAWTC | 4 cut(s) | 617, 762, 810, 928 |
| Tru1I | TTAA | 3 cut(s) | 567, 606, 1074 |
| Tru9I | TTAA | 3 cut(s) | 567, 606, 1074 |
| TscAI | CASTG | 3 cut(s) | 850, 938, 1093 |
| TseFI | GTSAC | 2 cut(s) | 94, 1049 |
| TseI | GCWGC | 2 cut(s) | 548, 836 |
| Tsp45I | GTSAC | 2 cut(s) | 94, 1049 |
| TspDTI | ATGAA | 5 cut(s) | 23, 66, 330, 893, 939 |
| TspRI | CASTG | 3 cut(s) | 850, 938, 1093 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 707 |
| VpaK11BI | GGWCC | 3 cut(s) | 242, 271, 698 |
| VspI | ATTAAT | 1 cut(s) | 1074 |
| XapI | RAATTY | 1 cut(s) | 490 |
| XceI | RCATGY | 3 cut(s) | 171, 290, 1032 |
| XspI | CTAG | 2 cut(s) | 63, 840 |
| ZrmI | AGTACT | 1 cut(s) | 917 |
| Zsp2I | ATGCAT | 2 cut(s) | 157, 169 |