Prupe.1G167700_v2.0.a1

Exopolygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000434
Physical Location & Seq
Reverse (-)
13653987 .. 13655885
1899 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G167700.1

Sequence Viewer

Length: 1227 bp
ATGGCTCTGAAATTAAGATTCTTGGCAATGCTTTTGTTCTTATTGTTAGCATCTACAGCTAAAGCTAATCCTAGTGTATTTGATGTGACAAGTGCAACATACGGTGCAAAGCCTGGCTCTGATGTCACAAAGGCCTTGGCCAAGGCTTGGAGTGATGCATGTGCATCGCCATCGGCAAGTAAAGTTGTTGTTCCGAGTGGGACATACAAGTTAAAGGAAGCAACTTTCAGAGGCCCCTGTAAGGCTCCTATTGAGATGCAAGTTCGAGGCACATTGCAGGCTCCAGCAAACGCTGGCCAATTCACAAGACCGGATACTTGGGTTGGTTTTCAGTACATTGATAAGCTCACCTTATCAGGTGGTGGGACTTTTGATGGCCAAGGAGCACTTGTTTGGGGTCAAAATGACTGCCACAAAAACAAAAATTGCAAACCAATGCCCATTAATCTGAGGTTCGAATTCATCACCAATTCCAGAGTTCAGGACATAACTTCACTTAATAGCAAAAATTTCCACATGCATGTTTTTAGATGCAAGTACACTACATTTCAACATCTTACCATCACAGCACCTGAAGAGAGCATAAATACAGATGGAATCCATATCGGGGCTTCAACTGGTGTCAACATTACTCATGCAAAGATTAGAACTGGGGATGATTGTGTTTCTATTGGTGATGACTCCCACCAAATCACAGTGACTGATGTTACTTGTGGGCCAGGCCATGGCATAAGCATTGGAAGCCTTGGAAGATATAAGGAAGAAAAGGCTGTGACCGGGATCATAGTTAAGAATTGCACCCTGACTAATACGCAGAATGGTGTGAGAATCAAAACATGGCCAGATTCTCCTTCTAGCAGTACTGCCTCAGATATACACTATGAGAATATTATCATGGTTAATGTCAGTAACCCTATCCTCATAGACCAATTATATTGCCCATATACTCGGTGTGACCAAAAGCCTCCGTCAAAAGTTAAGATCAACAATGTCAGCTTCAAGAACATTAAGGGCTCATCTTTCACTCCACTTGCAGTCAAGCTTGTATGTAGTAGGGGCCTACCATGTGAGAATGTGAAGTTGACTAACATTGATCTCACCTACAGTGGAGACCAAGGCCCTCTTACCTCTCTGTGTTCTAATGTCAAGCCCACAATTACTGGCATGAAAAAGGCTCTTGCTTGTGCTACATCGTCCTTGGCACCTCTTCCTTTATCCAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

409

Amino Acids

43.95

Weight (kDa)

9.19

Isoelectric Point (pI)

30.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07820 AT3G07830 AT3G07840 AT5G48140
fragaria_vesca FvH4_1g26811 FvH4_2g02350 FvH4_6g41380 FvH4_6g41380 FvH4_6g41380 FvH4_6g41430 FvH4_6g41740 FvH4_6g43060 FvH4_7g02910
malus_domestica MD00G1117700.v1.1 MD00G1117800.v1.1 MD00G1117900.v1.1 MD09G1120000.v1.1 MD09G1120100.v1.1 MD09G1120200.v1.1 MD09G1120300.v1.1 MD12G1142000.v1.1 MD13G1218300.v1.1 MD13G1220100.v1.1 MD13G1220200.v1.1 MD16G1223300.v1.1 MD16G1223500.v1.1 MD16G1223600.v1.1 MD17G1110800.v1.1
prunus_persica Prupe.1G044900_v2.0.a1 Prupe.1G045000_v2.0.a1 Prupe.1G167700_v2.0.a1 Prupe.2G005600_v2.0.a1 Prupe.2G005700_v2.0.a1 Prupe.2G008600_v2.0.a1 Prupe.2G009200_v2.0.a1 Prupe.2G009300_v2.0.a1 Prupe.2G009400_v2.0.a1 Prupe.3G109100_v2.0.a1 Prupe.3G109200_v2.0.a1 Prupe.3G109400_v2.0.a1 Prupe.3G109500_v2.0.a1 Prupe.3G109700_v2.0.a1 Prupe.3G203300_v2.0.a1 Prupe.3G203600_v2.0.a1 Prupe.3G203900_v2.0.a1 Prupe.3G204000_v2.0.a1 Prupe.3G204100_v2.0.a1 Prupe.3G204200_v2.0.a1
pyrus_communis pycom09g04480 pycom09g04490 pycom09g04500 pycom12g13680
rosa_chinensis RchiOBHm_Chr1g0323871 RchiOBHm_Chr2g0156921 RchiOBHm_Chr2g0159061 RchiOBHm_Chr6g0246271 RchiOBHm_Chr6g0246281
rosa_laevigata RLG00000015266 RLG00000020954 RLG00000021134 RLG00000030246 RLG00000030250 RLG00000030295
rosa_multiflora Rmu_co8098394.1_g000001 Rmu_co8404671.1_g000001 Rmu_sc0000507.1_g000021 Rmu_sc0001066.1_g000011 Rmu_sc0001066.1_g000015 Rmu_sc0009451.1_g000001 Rmu_ssc0000408.1_g000005
rosa_roxburghii Rroxscaffold_2G00090810 Rroxscaffold_2G00092580 Rroxscaffold_4G00326280 Rroxscaffold_7G00214720
rosa_rugosa Rorug01G0040400 Rorug02G0457200 Rorug05G0520000
rosa_samantha Rh1AG057700 Rh1BG048800 Rh1CG059100 Rh1DG063000 Rh2AG522900 Rh2BG536200 Rh2BG553200 Rh2CG507800 Rh2DG545200 Rh6AG034100 Rh6BG029300 Rh6DG028700
rosa_wichuraiana Rw0G023110 Rw1G004930 Rw2G043170 Rw2G044730 Rw6G002760 Rw6G002920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1201
AccB7I CCANNNNNTGG 2 cut(s) 147, 725
AclWI GGATC 1 cut(s) 788
AcoI YGGCCR 4 cut(s) 138, 295, 376, 839
AcsI RAATTY 2 cut(s) 458, 508
AcuI CTGAAG 1 cut(s) 594
AfaI GTAC 3 cut(s) 335, 539, 862
AfiI CCNNNNNNNGG 4 cut(s) 147, 241, 607, 725
AgsI TTSAA 3 cut(s) 551, 615, 1000
AjnI CCWGG 2 cut(s) 112, 718
AluBI AGCT 5 cut(s) 59, 65, 346, 996, 1042
AluI AGCT 5 cut(s) 59, 65, 346, 996, 1042
Alw21I GWGCWC 1 cut(s) 388
Alw26I GTCTC 1 cut(s) 1104
AlwI GGATC 1 cut(s) 788
AlwNI CAGNNNCTG 2 cut(s) 572, 701
ApoI RAATTY 2 cut(s) 458, 508
AseI ATTAAT 1 cut(s) 444
AspS9I GGNCC 4 cut(s) 233, 716, 1057, 1118
AsuC2I CCSGG 1 cut(s) 778
AsuHPI GGTGA 4 cut(s) 340, 457, 686, 1090
AsuII TTCGAA 1 cut(s) 456
BaeI ACNNNNGTAYC 2 cut(s) 306, 339
BalI TGGCCA 4 cut(s) 140, 297, 378, 841
BanI GGYRCC 1 cut(s) 1201
BanII GRGCYC 1 cut(s) 1016
Bbv12I GWGCWC 1 cut(s) 388
BccI CCATC 4 cut(s) 178, 368, 569, 587
BcgI CGANNNNNNTGC 4 cut(s) 147, 153, 181, 187
BciT130I CCWGG 2 cut(s) 114, 720
BciVI GTATCC 1 cut(s) 307
BcnI CCSGG 1 cut(s) 778
BcoDI GTCTC 1 cut(s) 1104
BfaI CTAG 2 cut(s) 72, 855
BfmI CTRYAG 2 cut(s) 54, 1102
BfuI GTATCC 1 cut(s) 307
BmcAI AGTACT 1 cut(s) 862
Bme1390I CCNGG 3 cut(s) 114, 720, 778
BmgT120I GGNCC 4 cut(s) 233, 716, 1057, 1118
BmiI GGNNCC 5 cut(s) 235, 246, 282, 1058, 1203
BmrFI CCNGG 3 cut(s) 114, 720, 778
BmrI ACTGGG 1 cut(s) 660
BmsI GCATC 5 cut(s) 59, 145, 173, 246, 521
BmuI ACTGGG 1 cut(s) 660
BpmI CTGGAG 1 cut(s) 267
Bpu14I TTCGAA 1 cut(s) 456
BpuMI CCSGG 1 cut(s) 778
BsaI GGTCTC 1 cut(s) 1104
BsaJI CCNNGG 7 cut(s) 135, 141, 379, 724, 745, 1114, 1197
BsaWI WCCGGW 1 cut(s) 310
BsaXI ACNNNNNCTCC 2 cut(s) 375, 405
Bsc4I CCNNNNNNNGG 4 cut(s) 147, 241, 607, 725
Bse1I ACTGG 3 cut(s) 622, 655, 1165
Bse3DI GCAATG 2 cut(s) 33, 272
BseBI CCWGG 2 cut(s) 114, 720
BseDI CCNNGG 7 cut(s) 135, 141, 379, 724, 745, 1114, 1197
BseGI GGATG 1 cut(s) 661
BseLI CCNNNNNNNGG 4 cut(s) 147, 241, 607, 725
BseMI GCAATG 2 cut(s) 33, 272
BseMII CTCAG 2 cut(s) 440, 882
BseNI ACTGG 3 cut(s) 622, 655, 1165
BshNI GGYRCC 1 cut(s) 1201
BsiHKAI GWGCWC 1 cut(s) 388
BsiSI CCGG 2 cut(s) 311, 777
BslFI GGGAC 2 cut(s) 214, 379
BslI CCNNNNNNNGG 4 cut(s) 147, 241, 607, 725
BsmAI GTCTC 1 cut(s) 1104
BsmFI GGGAC 2 cut(s) 214, 379
Bso31I GGTCTC 1 cut(s) 1104
Bsp119I TTCGAA 1 cut(s) 456
Bsp1286I GDGCHC 2 cut(s) 388, 1016
Bsp143I GATC 3 cut(s) 780, 981, 1093
Bsp19I CCATGG 1 cut(s) 724
BspCNI CTCAG 2 cut(s) 441, 881
BspLI GGNNCC 5 cut(s) 235, 246, 282, 1058, 1203
BspPI GGATC 1 cut(s) 788
BspT104I TTCGAA 1 cut(s) 456
BspT107I GGYRCC 1 cut(s) 1201
BspTNI GGTCTC 1 cut(s) 1104
BsrDI GCAATG 2 cut(s) 33, 272
BsrI ACTGG 3 cut(s) 622, 655, 1165
BssECI CCNNGG 7 cut(s) 135, 141, 379, 724, 745, 1114, 1197
BssMI GATC 3 cut(s) 780, 981, 1093
BssT1I CCWWGG 7 cut(s) 135, 141, 379, 724, 745, 1114, 1197
Bst2UI CCWGG 2 cut(s) 114, 720
Bst4CI ACNGT 3 cut(s) 104, 697, 1106
Bst6I CTCTTC 2 cut(s) 570, 1212
BstBI TTCGAA 1 cut(s) 456
BstC8I GCNNGC 2 cut(s) 279, 295
BstDEI CTNAG 2 cut(s) 449, 868
BstDSI CCRYGG 1 cut(s) 724
BstF5I GGATG 1 cut(s) 661
BstKTI GATC 3 cut(s) 783, 984, 1096
BstMAI GTCTC 1 cut(s) 1104
BstMBI GATC 3 cut(s) 780, 981, 1093
BstMWI GCNNNNNNNGC 2 cut(s) 56, 741
BstNI CCWGG 2 cut(s) 114, 720
BstNSI RCATGY 3 cut(s) 162, 520, 524
BstSCI CCNGG 3 cut(s) 112, 718, 776
BstSFI CTRYAG 2 cut(s) 54, 1102
BsuI GTATCC 1 cut(s) 307
BtgI CCRYGG 1 cut(s) 724
BtgZI GCGATG 1 cut(s) 150
BtsCI GGATG 1 cut(s) 661
BtsIMutI CAGTG 2 cut(s) 702, 1111
Cac8I GCNNGC 2 cut(s) 279, 295
CaiI CAGNNNCTG 2 cut(s) 572, 701
Cfr13I GGNCC 4 cut(s) 233, 716, 1057, 1118
Csp6I GTAC 3 cut(s) 334, 538, 861
CviAII CATG 9 cut(s) 159, 517, 521, 635, 725, 837, 895, 1065, 1165
CviQI GTAC 3 cut(s) 334, 538, 861
DdeI CTNAG 2 cut(s) 449, 868
DpnI GATC 3 cut(s) 782, 983, 1095
DpnII GATC 3 cut(s) 780, 981, 1093
EaeI YGGCCR 4 cut(s) 138, 295, 376, 839
Eam1104I CTCTTC 2 cut(s) 570, 1212
EarI CTCTTC 2 cut(s) 570, 1212
Eco130I CCWWGG 7 cut(s) 135, 141, 379, 724, 745, 1114, 1197
Eco147I AGGCCT 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 1016
Eco31I GGTCTC 1 cut(s) 1104
Eco57I CTGAAG 1 cut(s) 594
EcoO109I RGGNCCY 3 cut(s) 233, 1057, 1118
EcoRI GAATTC 1 cut(s) 458
EcoRII CCWGG 2 cut(s) 112, 718
EcoT14I CCWWGG 7 cut(s) 135, 141, 379, 724, 745, 1114, 1197
EcoT22I ATGCAT 2 cut(s) 160, 522
EcoT38I GRGCYC 1 cut(s) 1016
ErhI CCWWGG 7 cut(s) 135, 141, 379, 724, 745, 1114, 1197
FaeI CATG 9 cut(s) 162, 520, 524, 638, 728, 840, 898, 1068, 1168
FalI AAGNNNNNCTT 6 cut(s) 335, 367, 372, 404, 1107, 1139
FaqI GGGAC 2 cut(s) 214, 379
FatI CATG 9 cut(s) 158, 516, 520, 634, 724, 836, 894, 1064, 1164
FokI GGATG 1 cut(s) 668
FriOI GRGCYC 1 cut(s) 1016
FspBI CTAG 2 cut(s) 72, 855
GsuI CTGGAG 1 cut(s) 267
HapII CCGG 2 cut(s) 311, 777
Hin1II CATG 9 cut(s) 162, 520, 524, 638, 728, 840, 898, 1068, 1168
HincII GTYRAC 2 cut(s) 625, 1083
HindII GTYRAC 2 cut(s) 625, 1083
HindIII AAGCTT 1 cut(s) 1040
HinfI GANTC 5 cut(s) 18, 597, 680, 828, 845
HpaII CCGG 2 cut(s) 311, 777
HphI GGTGA 4 cut(s) 340, 457, 686, 1090
Hpy166II GTNNAC 3 cut(s) 540, 625, 1083
Hpy188I TCNGA 6 cut(s) 9, 121, 195, 230, 450, 871
Hpy188III TCNNGA 3 cut(s) 474, 482, 1000
Hpy8I GTNNAC 3 cut(s) 540, 625, 1083
HpyAV CCTTC 1 cut(s) 861
HpyCH4III ACNGT 3 cut(s) 104, 697, 1106
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 741
HpyF3I CTNAG 2 cut(s) 449, 868
Hsp92II CATG 9 cut(s) 162, 520, 524, 638, 728, 840, 898, 1068, 1168
Kzo9I GATC 3 cut(s) 780, 981, 1093
LmnI GCTCC 3 cut(s) 250, 286, 383
LweI GCATC 5 cut(s) 59, 145, 173, 246, 521
MaeI CTAG 2 cut(s) 72, 855
MaeIII GTNAC 7 cut(s) 85, 124, 697, 706, 772, 908, 953
MalI GATC 3 cut(s) 782, 983, 1095
MboI GATC 3 cut(s) 780, 981, 1093
MboII GAAGA 4 cut(s) 587, 762, 773, 1199
MhlI GDGCHC 2 cut(s) 388, 1016
MlsI TGGCCA 4 cut(s) 140, 297, 378, 841
MluCI AATT 9 cut(s) 11, 299, 424, 458, 469, 508, 793, 929, 1155
MluNI TGGCCA 4 cut(s) 140, 297, 378, 841
MlyI GAGTC 1 cut(s) 674
MnlI CCTC 9 cut(s) 224, 260, 444, 877, 929, 975, 1131, 1138, 1215
Mox20I TGGCCA 4 cut(s) 140, 297, 378, 841
Mph1103I ATGCAT 2 cut(s) 160, 522
MscI TGGCCA 4 cut(s) 140, 297, 378, 841
MseI TTAA 8 cut(s) 14, 212, 444, 498, 789, 900, 978, 1008
MslI CAYNNNNRTG 1 cut(s) 519
Msp20I TGGCCA 4 cut(s) 140, 297, 378, 841
MspI CCGG 2 cut(s) 311, 777
MspR9I CCNGG 3 cut(s) 114, 720, 778
MvaI CCWGG 2 cut(s) 114, 720
MwoI GCNNNNNNNGC 2 cut(s) 56, 741
NciI CCSGG 1 cut(s) 778
NcoI CCATGG 1 cut(s) 724
NdeII GATC 3 cut(s) 780, 981, 1093
NlaIII CATG 9 cut(s) 162, 520, 524, 638, 728, 840, 898, 1068, 1168
NlaIV GGNNCC 5 cut(s) 235, 246, 282, 1058, 1203
NmuCI GTSAC 5 cut(s) 85, 124, 697, 772, 953
NsiI ATGCAT 2 cut(s) 160, 522
NspI RCATGY 3 cut(s) 162, 520, 524
NspV TTCGAA 1 cut(s) 456
PceI AGGCCT 1 cut(s) 134
PfeI GAWTC 4 cut(s) 18, 597, 828, 845
PflMI CCANNNNNTGG 2 cut(s) 147, 725
PleI GAGTC 1 cut(s) 674
PpsI GAGTC 1 cut(s) 674
PshBI ATTAAT 1 cut(s) 444
Psp6I CCWGG 2 cut(s) 112, 718
PspGI CCWGG 2 cut(s) 112, 718
PspN4I GGNNCC 5 cut(s) 235, 246, 282, 1058, 1203
PspPI GGNCC 4 cut(s) 233, 716, 1057, 1118
PstNI CAGNNNCTG 2 cut(s) 572, 701
RsaI GTAC 3 cut(s) 335, 539, 862
RsaNI GTAC 3 cut(s) 334, 538, 861
RseI CAYNNNNRTG 1 cut(s) 519
SaqAI TTAA 8 cut(s) 14, 212, 444, 498, 789, 900, 978, 1008
Sau3AI GATC 3 cut(s) 780, 981, 1093
Sau96I GGNCC 4 cut(s) 233, 716, 1057, 1118
ScaI AGTACT 1 cut(s) 862
SchI GAGTC 1 cut(s) 674
ScrFI CCNGG 3 cut(s) 114, 720, 778
SduI GDGCHC 2 cut(s) 388, 1016
SfaNI GCATC 5 cut(s) 59, 145, 173, 246, 521
SfcI CTRYAG 2 cut(s) 54, 1102
SfuI TTCGAA 1 cut(s) 456
SmiMI CAYNNNNRTG 1 cut(s) 519
Sse9I AATT 9 cut(s) 11, 299, 424, 458, 469, 508, 793, 929, 1155
SseBI AGGCCT 1 cut(s) 134
SspI AATATT 1 cut(s) 889
SspMI CTAG 2 cut(s) 72, 855
StuI AGGCCT 1 cut(s) 134
StyD4I CCNGG 3 cut(s) 112, 718, 776
StyI CCWWGG 7 cut(s) 135, 141, 379, 724, 745, 1114, 1197
TaaI ACNGT 3 cut(s) 104, 697, 1106
TaqI TCGA 2 cut(s) 265, 456
TasI AATT 9 cut(s) 11, 299, 424, 458, 469, 508, 793, 929, 1155
TatI WGTACW 3 cut(s) 333, 537, 860
TfiI GAWTC 4 cut(s) 18, 597, 828, 845
Tru1I TTAA 8 cut(s) 14, 212, 444, 498, 789, 900, 978, 1008
Tru9I TTAA 8 cut(s) 14, 212, 444, 498, 789, 900, 978, 1008
TscAI CASTG 2 cut(s) 702, 1111
TseFI GTSAC 5 cut(s) 85, 124, 697, 772, 953
Tsp45I GTSAC 5 cut(s) 85, 124, 697, 772, 953
TspDTI ATGAA 2 cut(s) 451, 1181
TspGWI ACGGA 1 cut(s) 957
TspRI CASTG 2 cut(s) 702, 1111
Van91I CCANNNNNTGG 2 cut(s) 147, 725
VspI ATTAAT 1 cut(s) 444
XapI RAATTY 2 cut(s) 458, 508
XceI RCATGY 3 cut(s) 162, 520, 524
XspI CTAG 2 cut(s) 72, 855
ZrmI AGTACT 1 cut(s) 862
Zsp2I ATGCAT 2 cut(s) 160, 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.