Rorug02G0457200

Exopolygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000434
Physical Location & Seq
Forward (+)
58751424 .. 58752055
632 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0457200.1

Sequence Viewer

Length: 525 bp
ATGGAACCACAAACCCAGCAACCAACCGAGGATGGAGGAAGCAACAAAGCAGCCGGGAGTAGTGCTAACATGCTTTGTAGGCGGAGCAGGTGGACTCCCACTACAGATCATATAAGAATCCTCAATGAGCTTTTCTACAACAAGGGAGTTAGGTCCCCAACTATAGAGCAGGTTCAGAGGATCTGTCTCCAGCTGAAATGGTACGGCAAGATCGAGTTCAAGAACGTCTATTATTGGTTCGTGAACCAAAGGTCTCGAGAATTAAAGCAGAAGAAAAGGTCCACTTCGGATGTTCATGTGCCCATGCAAAGATCAGGCTTGTTGATGGGGAACTATGGCGATTATGGATCTATGAACATGGAGATTGAAACCCTTCCTCTGTTTCCCATGCATGGTGAGGACATCTTTGGCAACATGAAGACTACTTCCGATGGAGGTGGCGGTCACGGTGGTGGCTCTTACATTTCCCTTGAGCTCAGCCTTTCCTGCGAGGGCAAAGCTGGAAAAAGTTTCTGGAGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

174

Amino Acids

19.68

Weight (kDa)

9.15

Isoelectric Point (pI)

68.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 27 - 87 9.8e-08 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07820 AT3G07830 AT3G07840 AT5G48140
fragaria_vesca FvH4_1g26811 FvH4_2g02350 FvH4_6g41380 FvH4_6g41380 FvH4_6g41380 FvH4_6g41430 FvH4_6g41740 FvH4_6g43060 FvH4_7g02910
malus_domestica MD00G1117700.v1.1 MD00G1117800.v1.1 MD00G1117900.v1.1 MD09G1120000.v1.1 MD09G1120100.v1.1 MD09G1120200.v1.1 MD09G1120300.v1.1 MD12G1142000.v1.1 MD13G1218300.v1.1 MD13G1220100.v1.1 MD13G1220200.v1.1 MD16G1223300.v1.1 MD16G1223500.v1.1 MD16G1223600.v1.1 MD17G1110800.v1.1
prunus_persica Prupe.1G044900_v2.0.a1 Prupe.1G045000_v2.0.a1 Prupe.1G167700_v2.0.a1 Prupe.2G005600_v2.0.a1 Prupe.2G005700_v2.0.a1 Prupe.2G008600_v2.0.a1 Prupe.2G009200_v2.0.a1 Prupe.2G009300_v2.0.a1 Prupe.2G009400_v2.0.a1 Prupe.3G109100_v2.0.a1 Prupe.3G109200_v2.0.a1 Prupe.3G109400_v2.0.a1 Prupe.3G109500_v2.0.a1 Prupe.3G109700_v2.0.a1 Prupe.3G203300_v2.0.a1 Prupe.3G203600_v2.0.a1 Prupe.3G203900_v2.0.a1 Prupe.3G204000_v2.0.a1 Prupe.3G204100_v2.0.a1 Prupe.3G204200_v2.0.a1
pyrus_communis pycom09g04480 pycom09g04490 pycom09g04500 pycom12g13680
rosa_chinensis RchiOBHm_Chr1g0323871 RchiOBHm_Chr2g0156921 RchiOBHm_Chr2g0159061 RchiOBHm_Chr6g0246271 RchiOBHm_Chr6g0246281
rosa_laevigata RLG00000015266 RLG00000020954 RLG00000021134 RLG00000030246 RLG00000030250 RLG00000030295
rosa_multiflora Rmu_co8098394.1_g000001 Rmu_co8404671.1_g000001 Rmu_sc0000507.1_g000021 Rmu_sc0001066.1_g000011 Rmu_sc0001066.1_g000015 Rmu_sc0009451.1_g000001 Rmu_ssc0000408.1_g000005
rosa_roxburghii Rroxscaffold_2G00090810 Rroxscaffold_2G00092580 Rroxscaffold_4G00326280 Rroxscaffold_7G00214720
rosa_rugosa Rorug01G0040400 Rorug02G0457200 Rorug05G0520000
rosa_samantha Rh1AG057700 Rh1BG048800 Rh1CG059100 Rh1DG063000 Rh2AG522900 Rh2BG536200 Rh2BG553200 Rh2CG507800 Rh2DG545200 Rh6AG034100 Rh6BG029300 Rh6DG028700
rosa_wichuraiana Rw0G023110 Rw1G004930 Rw2G043170 Rw2G044730 Rw6G002760 Rw6G002920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 78
Acc36I ACCTGC 2 cut(s) 78, 160
AciI CCGC 3 cut(s) 82, 441, 520
AclWI GGATC 2 cut(s) 188, 355
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 1 cut(s) 392
AgsI TTSAA 2 cut(s) 220, 368
AleI CACNNNNGTG 1 cut(s) 450
AluBI AGCT 4 cut(s) 130, 193, 475, 500
AluI AGCT 4 cut(s) 130, 193, 475, 500
Alw21I GWGCWC 1 cut(s) 477
Alw26I GTCTC 2 cut(s) 191, 258
AlwI GGATC 2 cut(s) 188, 355
Ama87I CYCGRG 1 cut(s) 255
ApeKI GCWGC 1 cut(s) 50
Asp700I GAANNNNTTC 1 cut(s) 372
AspS9I GGNCC 2 cut(s) 153, 279
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 407
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 2 cut(s) 153, 279
BaeGI GKGCMC 1 cut(s) 303
BanII GRGCYC 1 cut(s) 477
BbsI GAAGAC 1 cut(s) 425
Bbv12I GWGCWC 1 cut(s) 477
BbvI GCAGC 1 cut(s) 62
BccI CCATC 3 cut(s) 26, 319, 425
BceAI ACGGC 1 cut(s) 220
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 2 cut(s) 191, 258
BfmI CTRYAG 2 cut(s) 102, 162
BfuAI ACCTGC 2 cut(s) 78, 160
BisI GCNGC 2 cut(s) 51, 520
BlpI GCTNAGC 1 cut(s) 476
BlsI GCNGC 2 cut(s) 52, 521
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 2 cut(s) 153, 279
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 2 cut(s) 153, 279
BmiI GGNNCC 3 cut(s) 6, 155, 518
BmrFI CCNGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 425
BpmI CTGGAG 1 cut(s) 173
Bpu1102I GCTNAGC 1 cut(s) 476
BpuEI CTTGAG 1 cut(s) 491
BpuMI CCSGG 1 cut(s) 55
BsaI GGTCTC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 392
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 37, 295
BseLI CCNNNNNNNGG 1 cut(s) 392
BseMII CTCAG 1 cut(s) 490
BseSI GKGCMC 1 cut(s) 303
BseXI GCAGC 1 cut(s) 62
BseYI CCCAGC 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 477
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 1 cut(s) 139
BslI CCNNNNNNNGG 1 cut(s) 392
BsmAI GTCTC 2 cut(s) 191, 258
BsmFI GGGAC 1 cut(s) 139
Bso31I GGTCTC 1 cut(s) 258
BsoBI CYCGRG 1 cut(s) 255
Bsp1286I GDGCHC 2 cut(s) 303, 477
Bsp143I GATC 5 cut(s) 106, 180, 210, 311, 347
Bsp1720I GCTNAGC 1 cut(s) 476
BspACI CCGC 3 cut(s) 82, 441, 520
BspCNI CTCAG 1 cut(s) 489
BspLI GGNNCC 3 cut(s) 6, 155, 518
BspMI ACCTGC 2 cut(s) 78, 160
BspPI GGATC 2 cut(s) 188, 355
BspTNI GGTCTC 1 cut(s) 258
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 5 cut(s) 106, 180, 210, 311, 347
Bst4CI ACNGT 1 cut(s) 449
BstDEI CTNAG 1 cut(s) 476
BstF5I GGATG 2 cut(s) 37, 295
BstKTI GATC 5 cut(s) 109, 183, 213, 314, 350
BstMAI GTCTC 2 cut(s) 191, 258
BstMBI GATC 5 cut(s) 106, 180, 210, 311, 347
BstMWI GCNNNNNNNGC 2 cut(s) 79, 486
BstNSI RCATGY 1 cut(s) 73
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 2 cut(s) 102, 162
BstSLI GKGCMC 1 cut(s) 303
BstV1I GCAGC 1 cut(s) 62
BstV2I GAAGAC 1 cut(s) 425
BstX2I RGATCY 2 cut(s) 180, 347
BstYI RGATCY 2 cut(s) 180, 347
BtsCI GGATG 2 cut(s) 37, 295
BveI ACCTGC 2 cut(s) 78, 160
Cfr13I GGNCC 2 cut(s) 153, 279
Csp6I GTAC 1 cut(s) 202
CviAII CATG 7 cut(s) 70, 296, 304, 358, 388, 392, 415
CviJI RGCY 9 cut(s) 53, 130, 193, 318, 456, 475, 480, 500, 519
CviKI_1 RGCY 9 cut(s) 53, 130, 193, 318, 456, 475, 480, 500, 519
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 476
DpnI GATC 5 cut(s) 108, 182, 212, 313, 349
DpnII GATC 5 cut(s) 106, 180, 210, 311, 347
EciI GGCGGA 1 cut(s) 97
Ecl136II GAGCTC 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 477
Eco31I GGTCTC 1 cut(s) 258
Eco47I GGWCC 2 cut(s) 153, 279
Eco53kI GAGCTC 1 cut(s) 475
Eco88I CYCGRG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 475
EcoO109I RGGNCCY 1 cut(s) 153
EcoT22I ATGCAT 1 cut(s) 393
EcoT38I GRGCYC 1 cut(s) 477
FaeI CATG 7 cut(s) 73, 299, 307, 361, 391, 395, 418
FalI AAGNNNNNCTT 2 cut(s) 268, 300
FaqI GGGAC 1 cut(s) 139
FatI CATG 7 cut(s) 69, 295, 303, 357, 387, 391, 414
Fnu4HI GCNGC 2 cut(s) 51, 520
FokI GGATG 2 cut(s) 44, 302
FriOI GRGCYC 1 cut(s) 477
Fsp4HI GCNGC 2 cut(s) 51, 520
GluI GCNGC 2 cut(s) 51, 520
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 1 cut(s) 173
HapII CCGG 1 cut(s) 54
Hin1II CATG 7 cut(s) 73, 299, 307, 361, 391, 395, 418
HinfI GANTC 2 cut(s) 94, 117
HpaII CCGG 1 cut(s) 54
HphI GGTGA 1 cut(s) 407
Hpy166II GTNNAC 3 cut(s) 93, 244, 282
Hpy188I TCNGA 3 cut(s) 177, 289, 430
Hpy188III TCNNGA 5 cut(s) 220, 241, 255, 257, 514
Hpy8I GTNNAC 3 cut(s) 93, 244, 282
HpyAV CCTTC 1 cut(s) 383
HpyCH4III ACNGT 1 cut(s) 449
HpyCH4IV ACGT 1 cut(s) 225
HpyCH4V TGCA 2 cut(s) 307, 391
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 486
HpyF3I CTNAG 1 cut(s) 476
HpySE526I ACGT 1 cut(s) 225
Hsp92II CATG 7 cut(s) 73, 299, 307, 361, 391, 395, 418
Kzo9I GATC 5 cut(s) 106, 180, 210, 311, 347
LmnI GCTCC 2 cut(s) 84, 516
LpnPI CCDG 9 cut(s) 29, 67, 73, 155, 203, 300, 486, 499, 499
Lsp1109I GCAGC 1 cut(s) 62
MaeII ACGT 1 cut(s) 225
MaeIII GTNAC 1 cut(s) 443
MalI GATC 5 cut(s) 108, 182, 212, 313, 349
MboI GATC 5 cut(s) 106, 180, 210, 311, 347
MboII GAAGA 2 cut(s) 283, 430
MflI RGATCY 2 cut(s) 180, 347
MhlI GDGCHC 2 cut(s) 303, 477
MluCI AATT 1 cut(s) 260
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 8 cut(s) 22, 29, 131, 171, 387, 391, 428, 484
Mph1103I ATGCAT 1 cut(s) 393
MroXI GAANNNNTTC 1 cut(s) 372
MseI TTAA 1 cut(s) 263
MslI CAYNNNNRTG 1 cut(s) 450
MspA1I CMGCKG 2 cut(s) 193, 522
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 55
MwoI GCNNNNNNNGC 2 cut(s) 79, 486
NciI CCSGG 1 cut(s) 55
NdeII GATC 5 cut(s) 106, 180, 210, 311, 347
NlaIII CATG 7 cut(s) 73, 299, 307, 361, 391, 395, 418
NlaIV GGNNCC 3 cut(s) 6, 155, 518
NmuCI GTSAC 1 cut(s) 443
NsiI ATGCAT 1 cut(s) 393
NspI RCATGY 1 cut(s) 73
OliI CACNNNNGTG 1 cut(s) 450
PaeR7I CTCGAG 1 cut(s) 255
PaqCI CACCTGC 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 372
PfeI GAWTC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 52, 521
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 477
Psp5II RGGWCCY 1 cut(s) 153
PspFI CCCAGC 1 cut(s) 15
PspN4I GGNNCC 3 cut(s) 6, 155, 518
PspPI GGNCC 2 cut(s) 153, 279
PspPPI RGGWCCY 1 cut(s) 153
PsuI RGATCY 2 cut(s) 180, 347
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 450
SacI GAGCTC 1 cut(s) 477
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 2 cut(s) 51, 520
Sau3AI GATC 5 cut(s) 106, 180, 210, 311, 347
Sau96I GGNCC 2 cut(s) 153, 279
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 2 cut(s) 303, 477
SfcI CTRYAG 2 cut(s) 102, 162
Sfr274I CTCGAG 1 cut(s) 255
SinI GGWCC 2 cut(s) 153, 279
SlaI CTCGAG 1 cut(s) 255
SmiMI CAYNNNNRTG 1 cut(s) 450
SmlI CTYRAG 2 cut(s) 255, 470
SmoI CTYRAG 2 cut(s) 255, 470
Sse9I AATT 1 cut(s) 260
SsiI CCGC 3 cut(s) 82, 441, 520
SstI GAGCTC 1 cut(s) 477
StyD4I CCNGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 449
TaiI ACGT 1 cut(s) 228
TaqI TCGA 2 cut(s) 213, 256
TasI AATT 1 cut(s) 260
TauI GCSGC 1 cut(s) 522
TfiI GAWTC 1 cut(s) 117
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TseFI GTSAC 1 cut(s) 443
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 443
TspDTI ATGAA 3 cut(s) 284, 368, 431
VpaK11BI GGWCC 2 cut(s) 153, 279
XceI RCATGY 1 cut(s) 73
XhoI CTCGAG 1 cut(s) 255
XmnI GAANNNNTTC 1 cut(s) 372
Zsp2I ATGCAT 1 cut(s) 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.