Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8404671.1

Orthogroup ID

OG0000434

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1257

Gene Structure 1257 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8404671.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

atggctctcaaacttgtcatggttatgtttccattacttatgttcttatccttgacatcctcgacatctggaaggagagagcttctagccgatggtggtgactttgacgtgaccaacgcgaaatatggtgcaaagcccgattctgatattactgaggctttagcaaatgcttggaaagacgcctgtgcatcaacatcggcaagtaaagttattgttccgaaagggacattcaaagtaaaagaagcaagtttcaaaggtccttgcaaggctcctattgaggttcaggtccaaggcacattacaggcgccagaagactcaagccaattatcgaaacaagatacttggatcgagtttttatacctcaacgacttcacactatcgggtggtggaacctttgatggccaaggacaaaaaacttggaaagccattgatccaaaaaacgcaaaggctggcaccattaatatcaggttccacgccgtcaagaagtcattagttaaggatataacttcacttaatagcaagaacttccacatcaacgtaataagttgcgagcaacttacgttcgatcatgtcaccgtcactgcacctggagatagccctaacacagatggaatacatatcgcgcgctcaaccggggtcaacgttactgatacaaatatcggaaccggagatgattgcatttcaattggtgatggtaccaagcaacttacaataactaaggttacttgtggaccaggccatggaataagcgttggaagtcttggaaggtacgacaaagaagaccctgtggaaggaatcaatgttaagaactgtaccctcagtaaaacgactaatggtgttagaatcaagacatgggctaaaaatcctcaagctagcacttgctcagaaattcactttgaggatatcatcatgaatgatgttcaaaacccaatcgtcgtagatcaagaatactgcccatgggatcaatgtgataaacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

326

Amino Acids

35.2

Weight (kDa)

5.72

Isoelectric Point (pI)

30.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000434)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G07820 AT3G07830 AT3G07840 AT5G48140
fragaria_vesca	FvH4_1g26811 FvH4_2g02350 FvH4_6g41380 FvH4_6g41380 FvH4_6g41380 FvH4_6g41430 FvH4_6g41740 FvH4_6g43060 FvH4_7g02910
malus_domestica	MD00G1117700.v1.1 MD00G1117800.v1.1 MD00G1117900.v1.1 MD09G1120000.v1.1 MD09G1120100.v1.1 MD09G1120200.v1.1 MD09G1120300.v1.1 MD12G1142000.v1.1 MD13G1218300.v1.1 MD13G1220100.v1.1 MD13G1220200.v1.1 MD16G1223300.v1.1 MD16G1223500.v1.1 MD16G1223600.v1.1 MD17G1110800.v1.1
prunus_persica	Prupe.1G044900_v2.0.a1 Prupe.1G045000_v2.0.a1 Prupe.1G167700_v2.0.a1 Prupe.2G005600_v2.0.a1 Prupe.2G005700_v2.0.a1 Prupe.2G008600_v2.0.a1 Prupe.2G009200_v2.0.a1 Prupe.2G009300_v2.0.a1 Prupe.2G009400_v2.0.a1 Prupe.3G109100_v2.0.a1 Prupe.3G109200_v2.0.a1 Prupe.3G109400_v2.0.a1 Prupe.3G109500_v2.0.a1 Prupe.3G109700_v2.0.a1 Prupe.3G203300_v2.0.a1 Prupe.3G203600_v2.0.a1 Prupe.3G203900_v2.0.a1 Prupe.3G204000_v2.0.a1 Prupe.3G204100_v2.0.a1 Prupe.3G204200_v2.0.a1
pyrus_communis	pycom09g04480 pycom09g04490 pycom09g04500 pycom12g13680
rosa_chinensis	RchiOBHm_Chr1g0323871 RchiOBHm_Chr2g0156921 RchiOBHm_Chr2g0159061 RchiOBHm_Chr6g0246271 RchiOBHm_Chr6g0246281
rosa_laevigata	RLG00000015266 RLG00000020954 RLG00000021134 RLG00000030246 RLG00000030250 RLG00000030295
rosa_multiflora	Rmu_co8098394.1_g000001 Rmu_co8404671.1_g000001 Rmu_sc0000507.1_g000021 Rmu_sc0001066.1_g000011 Rmu_sc0001066.1_g000015 Rmu_sc0009451.1_g000001 Rmu_ssc0000408.1_g000005
rosa_roxburghii	Rroxscaffold_2G00090810 Rroxscaffold_2G00092580 Rroxscaffold_4G00326280 Rroxscaffold_7G00214720
rosa_rugosa	Rorug01G0040400 Rorug02G0457200 Rorug05G0520000
rosa_samantha	Rh1AG057700 Rh1BG048800 Rh1CG059100 Rh1DG063000 Rh2AG522900 Rh2BG536200 Rh2BG553200 Rh2CG507800 Rh2DG545200 Rh6AG034100 Rh6BG029300 Rh6DG028700
rosa_wichuraiana	Rw0G023110 Rw1G004930 Rw2G043170 Rw2G044730 Rw6G002760 Rw6G002920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	695
AccB1I	GGYRCC	3 cut(s)	304, 452, 695
AccB7I	CCANNNNNTGG	1 cut(s)	740
AccII	CGCG	3 cut(s)	119, 623, 625
AclI	AACGTT	1 cut(s)	642
AclWI	GGATC	3 cut(s)	353, 425, 969
AcoI	YGGCCR	1 cut(s)	400
AcsI	RAATTY	1 cut(s)	888
AcyI	GRCGYC	2 cut(s)	180, 305
AfaI	GTAC	3 cut(s)	697, 770, 814
AfiI	CCNNNNNNNGG	2 cut(s)	740, 791
AgsI	TTSAA	4 cut(s)	232, 253, 684, 923
AjiI	CACGTC	1 cut(s)	109
AjnI	CCWGG	2 cut(s)	586, 733
AluBI	AGCT	2 cut(s)	82, 872
AluI	AGCT	2 cut(s)	82, 872
AlwI	GGATC	3 cut(s)	353, 425, 969
AoxI	GGCC	2 cut(s)	400, 736
ApoI	RAATTY	1 cut(s)	888
AseI	ATTAAT	1 cut(s)	459
Asp718I	GGTACC	1 cut(s)	695
AspLEI	GCGC	3 cut(s)	307, 625, 627
AspS9I	GGNCC	3 cut(s)	257, 286, 731
AsuC2I	CCSGG	1 cut(s)	634
AsuHPI	GGTGA	3 cut(s)	110, 565, 701
AsuNHI	GCTAGC	1 cut(s)	872
AvaII	GGWCC	3 cut(s)	257, 286, 731
BalI	TGGCCA	1 cut(s)	402
BanI	GGYRCC	3 cut(s)	304, 452, 695
BbsI	GAAGAC	2 cut(s)	318, 786
BccI	CCATC	4 cut(s)	86, 392, 602, 686
BceAI	ACGGC	1 cut(s)	461
BcgI	CGANNNNNNTGC	2 cut(s)	177, 211
BciT130I	CCWGG	2 cut(s)	588, 735
BcnI	CCSGG	1 cut(s)	634
BfaI	CTAG	2 cut(s)	86, 873
BfoI	RGCGCY	1 cut(s)	308
Bme1390I	CCNGG	3 cut(s)	588, 634, 735
Bme18I	GGWCC	3 cut(s)	257, 286, 731
BmgBI	CACGTC	1 cut(s)	109
BmgT120I	GGNCC	3 cut(s)	257, 286, 731
BmiI	GGNNCC	7 cut(s)	270, 306, 391, 454, 470, 664, 697
BmrFI	CCNGG	3 cut(s)	588, 634, 735
BmsI	GCATC	1 cut(s)	197
BmtI	GCTAGC	1 cut(s)	876
BpiI	GAAGAC	2 cut(s)	318, 786
BpmI	CTGGAG	1 cut(s)	609
BpuEI	CTTGAG	2 cut(s)	301, 852
BpuMI	CCSGG	1 cut(s)	634
BsaHI	GRCGYC	2 cut(s)	180, 305
BsaJI	CCNNGG	5 cut(s)	289, 403, 633, 739, 956
BsaWI	WCCGGW	1 cut(s)	665
Bsc4I	CCNNNNNNNGG	2 cut(s)	740, 791
BseBI	CCWGG	2 cut(s)	588, 735
BseDI	CCNNGG	5 cut(s)	289, 403, 633, 739, 956
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	2 cut(s)	740, 791
BseMII	CTCAG	3 cut(s)	144, 832, 897
BsePI	GCGCGC	1 cut(s)	623
BsgI	GTGCAG	1 cut(s)	567
Bsh1236I	CGCG	3 cut(s)	119, 623, 625
BshFI	GGCC	2 cut(s)	402, 738
BshNI	GGYRCC	3 cut(s)	304, 452, 695
BsiSI	CCGG	2 cut(s)	633, 666
BslFI	GGGAC	1 cut(s)	238
BslI	CCNNNNNNNGG	2 cut(s)	740, 791
BsmFI	GGGAC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	402, 738
Bsp143I	GATC	5 cut(s)	345, 430, 565, 940, 961
Bsp19I	CCATGG	2 cut(s)	739, 956
BspANI	GGCC	2 cut(s)	402, 738
BspCNI	CTCAG	3 cut(s)	145, 831, 896
BspFNI	CGCG	3 cut(s)	119, 623, 625
BspHI	TCATGA	1 cut(s)	909
BspLI	GGNNCC	7 cut(s)	270, 306, 391, 454, 470, 664, 697
BspOI	GCTAGC	1 cut(s)	876
BspPI	GGATC	3 cut(s)	353, 425, 969
BspT107I	GGYRCC	3 cut(s)	304, 452, 695
BssECI	CCNNGG	5 cut(s)	289, 403, 633, 739, 956
BssHII	GCGCGC	1 cut(s)	623
BssMI	GATC	5 cut(s)	345, 430, 565, 940, 961
BssNI	GRCGYC	2 cut(s)	180, 305
BssT1I	CCWWGG	4 cut(s)	289, 403, 739, 956
Bst2UI	CCWGG	2 cut(s)	588, 735
Bst4CI	ACNGT	2 cut(s)	577, 812
BstACI	GRCGYC	2 cut(s)	180, 305
BstC8I	GCNNGC	4 cut(s)	451, 551, 625, 874
BstDEI	CTNAG	4 cut(s)	153, 717, 818, 883
BstDSI	CCRYGG	2 cut(s)	739, 956
BstENI	CCTNNNNNAGG	1 cut(s)	789
BstF5I	GGATG	1 cut(s)	56
BstFNI	CGCG	3 cut(s)	119, 623, 625
BstH2I	RGCGCY	1 cut(s)	308
BstHHI	GCGC	3 cut(s)	307, 625, 627
BstKTI	GATC	5 cut(s)	348, 433, 568, 943, 964
BstMBI	GATC	5 cut(s)	345, 430, 565, 940, 961
BstNI	CCWGG	2 cut(s)	588, 735
BstSCI	CCNGG	3 cut(s)	586, 632, 733
BstUI	CGCG	3 cut(s)	119, 623, 625
BstV2I	GAAGAC	2 cut(s)	318, 786
BsuRI	GGCC	2 cut(s)	402, 738
BtgI	CCRYGG	2 cut(s)	739, 956
BtrI	CACGTC	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	56
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	1 cut(s)	579
Cac8I	GCNNGC	4 cut(s)	451, 551, 625, 874
CciI	TCATGA	1 cut(s)	909
CfoI	GCGC	3 cut(s)	307, 625, 627
Cfr13I	GGNCC	3 cut(s)	257, 286, 731
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	3 cut(s)	696, 769, 813
CviAII	CATG	6 cut(s)	19, 569, 740, 852, 910, 957
CviQI	GTAC	3 cut(s)	696, 769, 813
DdeI	CTNAG	4 cut(s)	153, 717, 818, 883
DinI	GGCGCC	1 cut(s)	306
DpnI	GATC	5 cut(s)	347, 432, 567, 942, 963
DpnII	GATC	5 cut(s)	345, 430, 565, 940, 961
EaeI	YGGCCR	1 cut(s)	400
Eco130I	CCWWGG	4 cut(s)	289, 403, 739, 956
Eco32I	GATATC	1 cut(s)	904
Eco47I	GGWCC	3 cut(s)	257, 286, 731
EcoNI	CCTNNNNNAGG	1 cut(s)	789
EcoO109I	RGGNCCY	1 cut(s)	257
EcoRII	CCWGG	2 cut(s)	586, 733
EcoRV	GATATC	1 cut(s)	904
EcoT14I	CCWWGG	4 cut(s)	289, 403, 739, 956
EgeI	GGCGCC	1 cut(s)	306
EheI	GGCGCC	1 cut(s)	306
ErhI	CCWWGG	4 cut(s)	289, 403, 739, 956
FaeI	CATG	6 cut(s)	22, 572, 743, 855, 913, 960
FaqI	GGGAC	1 cut(s)	238
FatI	CATG	6 cut(s)	18, 568, 739, 851, 909, 956
FokI	GGATG	1 cut(s)	43
FspBI	CTAG	2 cut(s)	86, 873
GlaI	GCGC	3 cut(s)	306, 624, 626
GsuI	CTGGAG	1 cut(s)	609
HaeII	RGCGCY	1 cut(s)	308
HaeIII	GGCC	2 cut(s)	402, 738
HapII	CCGG	2 cut(s)	633, 666
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	3 cut(s)	307, 625, 627
Hin1I	GRCGYC	2 cut(s)	180, 305
Hin1II	CATG	6 cut(s)	22, 572, 743, 855, 913, 960
Hin6I	GCGC	3 cut(s)	305, 623, 625
HinP1I	GCGC	3 cut(s)	305, 623, 625
HincII	GTYRAC	1 cut(s)	640
HindII	GTYRAC	1 cut(s)	640
HinfI	GANTC	4 cut(s)	140, 314, 795, 843
HpaII	CCGG	2 cut(s)	633, 666
HphI	GGTGA	3 cut(s)	110, 565, 701
Hpy166II	GTNNAC	2 cut(s)	640, 731
Hpy188I	TCNGA	4 cut(s)	145, 219, 662, 886
Hpy188III	TCNNGA	5 cut(s)	69, 481, 847, 910, 944
Hpy8I	GTNNAC	2 cut(s)	640, 731
Hpy99I	CGWCG	1 cut(s)	938
HpyAV	CCTTC	3 cut(s)	66, 759, 785
HpyCH4III	ACNGT	2 cut(s)	577, 812
HpyCH4IV	ACGT	4 cut(s)	108, 537, 560, 642
HpyCH4V	TGCA	5 cut(s)	131, 188, 264, 584, 678
HpyF3I	CTNAG	4 cut(s)	153, 717, 818, 883
HpySE526I	ACGT	4 cut(s)	108, 537, 560, 642
Hsp92I	GRCGYC	2 cut(s)	180, 305
Hsp92II	CATG	6 cut(s)	22, 572, 743, 855, 913, 960
HspAI	GCGC	3 cut(s)	305, 623, 625
KasI	GGCGCC	1 cut(s)	304
KpnI	GGTACC	1 cut(s)	699
Kzo9I	GATC	5 cut(s)	345, 430, 565, 940, 961
LmnI	GCTCC	1 cut(s)	274
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	2 cut(s)	86, 873
MaeII	ACGT	4 cut(s)	108, 537, 560, 642
MaeIII	GTNAC	6 cut(s)	98, 109, 571, 577, 643, 721
MalI	GATC	5 cut(s)	347, 432, 567, 942, 963
MboI	GATC	5 cut(s)	345, 430, 565, 940, 961
MboII	GAAGA	2 cut(s)	323, 791
MfeI	CAATTG	1 cut(s)	684
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	3 cut(s)	323, 684, 888
MluNI	TGGCCA	1 cut(s)	402
Mly113I	GGCGCC	1 cut(s)	305
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	733
MnlI	CCTC	7 cut(s)	70, 148, 271, 371, 827, 876, 892
Mox20I	TGGCCA	1 cut(s)	402
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	4 cut(s)	459, 495, 513, 804
MslI	CAYNNNNRTG	1 cut(s)	23
Msp20I	TGGCCA	1 cut(s)	402
MspI	CCGG	2 cut(s)	633, 666
MspR9I	CCNGG	3 cut(s)	588, 634, 735
MunI	CAATTG	1 cut(s)	684
MvaI	CCWGG	2 cut(s)	588, 735
MvnI	CGCG	3 cut(s)	119, 623, 625
NarI	GGCGCC	1 cut(s)	305
NciI	CCSGG	1 cut(s)	634
NcoI	CCATGG	2 cut(s)	739, 956
NdeII	GATC	5 cut(s)	345, 430, 565, 940, 961
NheI	GCTAGC	1 cut(s)	872
NlaIII	CATG	6 cut(s)	22, 572, 743, 855, 913, 960
NlaIV	GGNNCC	7 cut(s)	270, 306, 391, 454, 470, 664, 697
NmuCI	GTSAC	4 cut(s)	98, 109, 571, 577
PagI	TCATGA	1 cut(s)	909
PauI	GCGCGC	1 cut(s)	623
PfeI	GAWTC	3 cut(s)	140, 795, 843
PflMI	CCANNNNNTGG	1 cut(s)	740
PleI	GAGTC	1 cut(s)	308
PluTI	GGCGCC	1 cut(s)	308
PpsI	GAGTC	1 cut(s)	308
PpuMI	RGGWCCY	1 cut(s)	257
PshBI	ATTAAT	1 cut(s)	459
Psp1406I	AACGTT	1 cut(s)	642
Psp5II	RGGWCCY	1 cut(s)	257
Psp6I	CCWGG	2 cut(s)	586, 733
PspGI	CCWGG	2 cut(s)	586, 733
PspN4I	GGNNCC	7 cut(s)	270, 306, 391, 454, 470, 664, 697
PspPI	GGNCC	3 cut(s)	257, 286, 731
PspPPI	RGGWCCY	1 cut(s)	257
PteI	GCGCGC	1 cut(s)	623
RsaI	GTAC	3 cut(s)	697, 770, 814
RsaNI	GTAC	3 cut(s)	696, 769, 813
RseI	CAYNNNNRTG	1 cut(s)	23
SaqAI	TTAA	4 cut(s)	459, 495, 513, 804
Sau3AI	GATC	5 cut(s)	345, 430, 565, 940, 961
Sau96I	GGNCC	3 cut(s)	257, 286, 731
SchI	GAGTC	1 cut(s)	308
ScrFI	CCNGG	3 cut(s)	588, 634, 735
SfaNI	GCATC	1 cut(s)	197
SfoI	GGCGCC	1 cut(s)	306
SinI	GGWCC	3 cut(s)	257, 286, 731
SmiMI	CAYNNNNRTG	1 cut(s)	23
SmlI	CTYRAG	2 cut(s)	316, 867
SmoI	CTYRAG	2 cut(s)	316, 867
Sse9I	AATT	3 cut(s)	323, 684, 888
SspDI	GGCGCC	1 cut(s)	304
SspMI	CTAG	2 cut(s)	86, 873
StyD4I	CCNGG	3 cut(s)	586, 632, 733
StyI	CCWWGG	4 cut(s)	289, 403, 739, 956
TaaI	ACNGT	2 cut(s)	577, 812
TaiI	ACGT	4 cut(s)	111, 540, 563, 645
TaqI	TCGA	4 cut(s)	62, 329, 348, 564
TasI	AATT	3 cut(s)	323, 684, 888
TfiI	GAWTC	3 cut(s)	140, 795, 843
Tru1I	TTAA	4 cut(s)	459, 495, 513, 804
Tru9I	TTAA	4 cut(s)	459, 495, 513, 804
TscAI	CASTG	1 cut(s)	586
TseFI	GTSAC	4 cut(s)	98, 109, 571, 577
Tsp45I	GTSAC	4 cut(s)	98, 109, 571, 577
TspDTI	ATGAA	1 cut(s)	926
TspRI	CASTG	1 cut(s)	586
Van91I	CCANNNNNTGG	1 cut(s)	740
VpaK11BI	GGWCC	3 cut(s)	257, 286, 731
VspI	ATTAAT	1 cut(s)	459
XagI	CCTNNNNNAGG	1 cut(s)	789
XapI	RAATTY	1 cut(s)	888
XspI	CTAG	2 cut(s)	86, 873

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.