Prupe.1G045000_v2.0.a1

Exopolygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000434
Physical Location & Seq
Reverse (-)
3219846 .. 3221032
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G045000.1

Sequence Viewer

Length: 1164 bp
ATGGCTCTGAAATTAAGTTTATTGGCAATGCTTTTGTTCTTATTGTTAGCATCTACATCTAAAGCTCATGCTAGTGTGTTTGACGTGATGAGTGCAACATACAGTGCAAAGCCTGGCTCTGATGTCAGTAAGGCCTTGGCCAAGGCTTGGAGTGATGCATGTGCATCGCCATCGCGGGACATACAAGTTAAAAGAAGCAACTTTCAGAGGTCCTTGCCTATTGAGATGCAAGTTCGAGGCACATTGCAAGCTCTAGCAGACGCTGGCCAACTCACAAGACCGGATACTTGGGTTGGTTTTCAGTACATTGACATGCTCACCTTATCAGGTGGTGGGACTTTTGATGGCCAAGGAGCACTTGCTTGGGGTCAAAATGACTGCCACAAAAACAAAAATTGCAAACCTATTCCCATTAATCTGCGGTTCGAATTCCTCACCCATTCCAAAGTTCAGGACATAACTTCACTTAACAGCAAAAATACATTTCAACATCTTACCATCACAGCACCTGATGAGAGCAGAAACACAGATGGAATCCATATCGGGGCTTCAACTAGTATCAACATTACTCATGCAAAGATTGGAACTGGGGATGACTGTGCTTCTATTGGTGATGACTCCCACCAAATCACAGTGACTGATGTTACTTGTGGGCCAGGCCATGGAATAAGCATTGGAAGCCTTGGAAGATATAAGGAAGAAAAGGATGTGACCGGGATCATAGTTAAGAACTGCACCCTAACTAATACGCAAAACGATGTGAGAATCAAAACATGGCCAGATTCTCCTTCGCCTAGCACTGCCTCAGATATACACTATGAGGATATTACTATGGTTAATGTTAGTAAACCTATCCTCATAGACCAATTGTACTGCCCATATACTCGGTGTGACCAAAAGCCTCCGTCAAAAGTTAAGATCAGCAATGTCAGCTTCAAGAACATTAGGGGCTCATCTTTCACTCCACTTGCAGTCAAGCTTGTATGTACCAGGGGCATACCGTGTGAGAATGTGGAGTTGACTAACATTGATCTCACCTACGGTGGAGACCAAGGCCCTCTTACCTCTCTATGTTCTAATGTCAAGCCCAGAATTACTGACGTGATAAAGGCCCTTGCTTGTGCTACATCGTCCTTGGTTCCTCTCCCTTTATCCAAAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

388

Amino Acids

41.74

Weight (kDa)

8.38

Isoelectric Point (pI)

31.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07820 AT3G07830 AT3G07840 AT5G48140
fragaria_vesca FvH4_1g26811 FvH4_2g02350 FvH4_6g41380 FvH4_6g41380 FvH4_6g41380 FvH4_6g41430 FvH4_6g41740 FvH4_6g43060 FvH4_7g02910
malus_domestica MD00G1117700.v1.1 MD00G1117800.v1.1 MD00G1117900.v1.1 MD09G1120000.v1.1 MD09G1120100.v1.1 MD09G1120200.v1.1 MD09G1120300.v1.1 MD12G1142000.v1.1 MD13G1218300.v1.1 MD13G1220100.v1.1 MD13G1220200.v1.1 MD16G1223300.v1.1 MD16G1223500.v1.1 MD16G1223600.v1.1 MD17G1110800.v1.1
prunus_persica Prupe.1G044900_v2.0.a1 Prupe.1G045000_v2.0.a1 Prupe.1G167700_v2.0.a1 Prupe.2G005600_v2.0.a1 Prupe.2G005700_v2.0.a1 Prupe.2G008600_v2.0.a1 Prupe.2G009200_v2.0.a1 Prupe.2G009300_v2.0.a1 Prupe.2G009400_v2.0.a1 Prupe.3G109100_v2.0.a1 Prupe.3G109200_v2.0.a1 Prupe.3G109400_v2.0.a1 Prupe.3G109500_v2.0.a1 Prupe.3G109700_v2.0.a1 Prupe.3G203300_v2.0.a1 Prupe.3G203600_v2.0.a1 Prupe.3G203900_v2.0.a1 Prupe.3G204000_v2.0.a1 Prupe.3G204100_v2.0.a1 Prupe.3G204200_v2.0.a1
pyrus_communis pycom09g04480 pycom09g04490 pycom09g04500 pycom12g13680
rosa_chinensis RchiOBHm_Chr1g0323871 RchiOBHm_Chr2g0156921 RchiOBHm_Chr2g0159061 RchiOBHm_Chr6g0246271 RchiOBHm_Chr6g0246281
rosa_laevigata RLG00000015266 RLG00000020954 RLG00000021134 RLG00000030246 RLG00000030250 RLG00000030295
rosa_multiflora Rmu_co8098394.1_g000001 Rmu_co8404671.1_g000001 Rmu_sc0000507.1_g000021 Rmu_sc0001066.1_g000011 Rmu_sc0001066.1_g000015 Rmu_sc0009451.1_g000001 Rmu_ssc0000408.1_g000005
rosa_roxburghii Rroxscaffold_2G00090810 Rroxscaffold_2G00092580 Rroxscaffold_4G00326280 Rroxscaffold_7G00214720
rosa_rugosa Rorug01G0040400 Rorug02G0457200 Rorug05G0520000
rosa_samantha Rh1AG057700 Rh1BG048800 Rh1CG059100 Rh1DG063000 Rh2AG522900 Rh2BG536200 Rh2BG553200 Rh2CG507800 Rh2DG545200 Rh6AG034100 Rh6BG029300 Rh6DG028700
rosa_wichuraiana Rw0G023110 Rw1G004930 Rw2G043170 Rw2G044730 Rw6G002760 Rw6G002920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 147, 662
AccII CGCG 1 cut(s) 175
AciI CCGC 2 cut(s) 175, 421
AclWI GGATC 1 cut(s) 725
AcoI YGGCCR 4 cut(s) 138, 265, 346, 776
AcsI RAATTY 1 cut(s) 428
AfaI GTAC 3 cut(s) 305, 872, 988
AfiI CCNNNNNNNGG 3 cut(s) 147, 544, 662
AgsI TTSAA 3 cut(s) 488, 552, 937
AhlI ACTAGT 1 cut(s) 554
AjiI CACGTC 2 cut(s) 85, 1102
AjnI CCWGG 3 cut(s) 112, 655, 989
AluBI AGCT 4 cut(s) 65, 251, 933, 979
AluI AGCT 4 cut(s) 65, 251, 933, 979
Alw21I GWGCWC 1 cut(s) 358
Alw26I GTCTC 1 cut(s) 1041
AlwI GGATC 1 cut(s) 725
AlwNI CAGNNNCTG 3 cut(s) 263, 509, 638
AoxI GGCC 9 cut(s) 132, 138, 265, 346, 653, 658, 776, 1054, 1110
ApoI RAATTY 1 cut(s) 428
AseI ATTAAT 1 cut(s) 414
AspS9I GGNCC 4 cut(s) 210, 653, 1055, 1111
AsuC2I CCSGG 1 cut(s) 715
AsuHPI GGTGA 4 cut(s) 310, 427, 623, 1027
AsuII TTCGAA 1 cut(s) 426
AvaII GGWCC 1 cut(s) 210
BaeI ACNNNNGTAYC 2 cut(s) 276, 309
BalI TGGCCA 4 cut(s) 140, 267, 348, 778
BanII GRGCYC 1 cut(s) 953
Bbv12I GWGCWC 1 cut(s) 358
BccI CCATC 4 cut(s) 178, 338, 506, 524
BcgI CGANNNNNNTGC 4 cut(s) 147, 153, 181, 187
BciT130I CCWGG 3 cut(s) 114, 657, 991
BciVI GTATCC 1 cut(s) 277
BcnI CCSGG 1 cut(s) 715
BcoDI GTCTC 1 cut(s) 1041
BcuI ACTAGT 1 cut(s) 554
BfaI CTAG 4 cut(s) 72, 254, 555, 795
BfuI GTATCC 1 cut(s) 277
Bme1390I CCNGG 4 cut(s) 114, 657, 715, 991
Bme18I GGWCC 1 cut(s) 210
BmgBI CACGTC 2 cut(s) 85, 1102
BmgT120I GGNCC 4 cut(s) 210, 653, 1055, 1111
BmiI GGNNCC 1 cut(s) 1140
BmrFI CCNGG 4 cut(s) 114, 657, 715, 991
BmrI ACTGGG 1 cut(s) 597
BmsI GCATC 4 cut(s) 59, 145, 173, 216
BmuI ACTGGG 1 cut(s) 597
Bpu14I TTCGAA 1 cut(s) 426
BpuMI CCSGG 1 cut(s) 715
BsaI GGTCTC 1 cut(s) 1041
BsaJI CCNNGG 8 cut(s) 135, 141, 349, 661, 682, 990, 1051, 1134
BsaWI WCCGGW 1 cut(s) 280
Bsc4I CCNNNNNNNGG 3 cut(s) 147, 544, 662
Bse1I ACTGG 1 cut(s) 592
Bse3DI GCAATG 3 cut(s) 33, 242, 931
BseBI CCWGG 3 cut(s) 114, 657, 991
BseDI CCNNGG 8 cut(s) 135, 141, 349, 661, 682, 990, 1051, 1134
BseGI GGATG 2 cut(s) 598, 712
BseLI CCNNNNNNNGG 3 cut(s) 147, 544, 662
BseMI GCAATG 3 cut(s) 33, 242, 931
BseMII CTCAG 1 cut(s) 819
BseNI ACTGG 1 cut(s) 592
BsgI GTGCAG 1 cut(s) 718
Bsh1236I CGCG 1 cut(s) 175
BshFI GGCC 9 cut(s) 134, 140, 267, 348, 655, 660, 778, 1056, 1112
BsiHKAI GWGCWC 1 cut(s) 358
BsiSI CCGG 2 cut(s) 281, 714
BslFI GGGAC 2 cut(s) 191, 349
BslI CCNNNNNNNGG 3 cut(s) 147, 544, 662
BsmAI GTCTC 1 cut(s) 1041
BsmFI GGGAC 2 cut(s) 191, 349
BsnI GGCC 9 cut(s) 134, 140, 267, 348, 655, 660, 778, 1056, 1112
Bso31I GGTCTC 1 cut(s) 1041
Bsp119I TTCGAA 1 cut(s) 426
Bsp1286I GDGCHC 2 cut(s) 358, 953
Bsp143I GATC 3 cut(s) 717, 918, 1030
Bsp19I CCATGG 1 cut(s) 661
BspACI CCGC 2 cut(s) 175, 421
BspANI GGCC 9 cut(s) 134, 140, 267, 348, 655, 660, 778, 1056, 1112
BspCNI CTCAG 1 cut(s) 818
BspFNI CGCG 1 cut(s) 175
BspLI GGNNCC 1 cut(s) 1140
BspPI GGATC 1 cut(s) 725
BspT104I TTCGAA 1 cut(s) 426
BspTNI GGTCTC 1 cut(s) 1041
BsrDI GCAATG 3 cut(s) 33, 242, 931
BsrI ACTGG 1 cut(s) 592
BssECI CCNNGG 8 cut(s) 135, 141, 349, 661, 682, 990, 1051, 1134
BssMI GATC 3 cut(s) 717, 918, 1030
BssT1I CCWWGG 7 cut(s) 135, 141, 349, 661, 682, 1051, 1134
Bst2UI CCWGG 3 cut(s) 114, 657, 991
Bst4CI ACNGT 5 cut(s) 104, 599, 634, 1002, 1043
BstBI TTCGAA 1 cut(s) 426
BstC8I GCNNGC 2 cut(s) 249, 265
BstDEI CTNAG 1 cut(s) 805
BstDSI CCRYGG 1 cut(s) 661
BstF5I GGATG 2 cut(s) 598, 712
BstFNI CGCG 1 cut(s) 175
BstKTI GATC 3 cut(s) 720, 921, 1033
BstMAI GTCTC 1 cut(s) 1041
BstMBI GATC 3 cut(s) 717, 918, 1030
BstMWI GCNNNNNNNGC 2 cut(s) 678, 930
BstNI CCWGG 3 cut(s) 114, 657, 991
BstNSI RCATGY 2 cut(s) 162, 316
BstSCI CCNGG 4 cut(s) 112, 655, 713, 989
BstUI CGCG 1 cut(s) 175
BsuI GTATCC 1 cut(s) 277
BsuRI GGCC 9 cut(s) 134, 140, 267, 348, 655, 660, 778, 1056, 1112
BtgI CCRYGG 1 cut(s) 661
BtgZI GCGATG 2 cut(s) 150, 156
BtrI CACGTC 2 cut(s) 85, 1102
BtsCI GGATG 2 cut(s) 598, 712
BtsI GCAGTG 1 cut(s) 798
BtsIMutI CAGTG 3 cut(s) 109, 639, 798
Cac8I GCNNGC 2 cut(s) 249, 265
CaiI CAGNNNCTG 3 cut(s) 263, 509, 638
Cfr13I GGNCC 4 cut(s) 210, 653, 1055, 1111
CseI GACGC 1 cut(s) 269
Csp6I GTAC 3 cut(s) 304, 871, 987
CviAII CATG 6 cut(s) 68, 159, 313, 572, 662, 774
CviQI GTAC 3 cut(s) 304, 871, 987
DdeI CTNAG 1 cut(s) 805
DpnI GATC 3 cut(s) 719, 920, 1032
DpnII GATC 3 cut(s) 717, 918, 1030
EaeI YGGCCR 4 cut(s) 138, 265, 346, 776
Eco130I CCWWGG 7 cut(s) 135, 141, 349, 661, 682, 1051, 1134
Eco147I AGGCCT 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 953
Eco31I GGTCTC 1 cut(s) 1041
Eco47I GGWCC 1 cut(s) 210
EcoO109I RGGNCCY 3 cut(s) 210, 1055, 1111
EcoRI GAATTC 1 cut(s) 428
EcoRII CCWGG 3 cut(s) 112, 655, 989
EcoT14I CCWWGG 7 cut(s) 135, 141, 349, 661, 682, 1051, 1134
EcoT22I ATGCAT 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 953
ErhI CCWWGG 7 cut(s) 135, 141, 349, 661, 682, 1051, 1134
FaeI CATG 6 cut(s) 71, 162, 316, 575, 665, 777
FalI AAGNNNNNCTT 4 cut(s) 342, 374, 1044, 1076
FaqI GGGAC 2 cut(s) 191, 349
FatI CATG 6 cut(s) 67, 158, 312, 571, 661, 773
FauI CCCGC 1 cut(s) 168
FokI GGATG 2 cut(s) 605, 719
FriOI GRGCYC 1 cut(s) 953
FspBI CTAG 4 cut(s) 72, 254, 555, 795
HaeIII GGCC 9 cut(s) 134, 140, 267, 348, 655, 660, 778, 1056, 1112
HapII CCGG 2 cut(s) 281, 714
HgaI GACGC 1 cut(s) 269
Hin1II CATG 6 cut(s) 71, 162, 316, 575, 665, 777
HincII GTYRAC 1 cut(s) 1020
HindII GTYRAC 1 cut(s) 1020
HindIII AAGCTT 1 cut(s) 977
HinfI GANTC 4 cut(s) 534, 617, 765, 782
HpaII CCGG 2 cut(s) 281, 714
HphI GGTGA 4 cut(s) 310, 427, 623, 1027
Hpy166II GTNNAC 2 cut(s) 848, 1020
Hpy188I TCNGA 4 cut(s) 9, 121, 207, 808
Hpy188III TCNNGA 2 cut(s) 452, 937
Hpy8I GTNNAC 2 cut(s) 848, 1020
HpyAV CCTTC 1 cut(s) 798
HpyCH4III ACNGT 5 cut(s) 104, 599, 634, 1002, 1043
HpyCH4IV ACGT 2 cut(s) 84, 1101
HpyF10VI GCNNNNNNNGC 2 cut(s) 678, 930
HpyF3I CTNAG 1 cut(s) 805
HpySE526I ACGT 2 cut(s) 84, 1101
Hsp92II CATG 6 cut(s) 71, 162, 316, 575, 665, 777
Kzo9I GATC 3 cut(s) 717, 918, 1030
LmnI GCTCC 1 cut(s) 353
LweI GCATC 4 cut(s) 59, 145, 173, 216
MaeI CTAG 4 cut(s) 72, 254, 555, 795
MaeII ACGT 2 cut(s) 84, 1101
MaeIII GTNAC 4 cut(s) 634, 643, 709, 890
MalI GATC 3 cut(s) 719, 920, 1032
MboI GATC 3 cut(s) 717, 918, 1030
MboII GAAGA 2 cut(s) 699, 710
MfeI CAATTG 1 cut(s) 866
MhlI GDGCHC 2 cut(s) 358, 953
MlsI TGGCCA 4 cut(s) 140, 267, 348, 778
MluCI AATT 5 cut(s) 11, 394, 428, 866, 1092
MluNI TGGCCA 4 cut(s) 140, 267, 348, 778
MlyI GAGTC 1 cut(s) 611
Mox20I TGGCCA 4 cut(s) 140, 267, 348, 778
Mph1103I ATGCAT 1 cut(s) 160
MscI TGGCCA 4 cut(s) 140, 267, 348, 778
MseI TTAA 7 cut(s) 14, 189, 414, 468, 726, 837, 915
MslI CAYNNNNRTG 2 cut(s) 72, 311
Msp20I TGGCCA 4 cut(s) 140, 267, 348, 778
MspI CCGG 2 cut(s) 281, 714
MspR9I CCNGG 4 cut(s) 114, 657, 715, 991
MunI CAATTG 1 cut(s) 866
MvaI CCWGG 3 cut(s) 114, 657, 991
MvnI CGCG 1 cut(s) 175
MwoI GCNNNNNNNGC 2 cut(s) 678, 930
NciI CCSGG 1 cut(s) 715
NcoI CCATGG 1 cut(s) 661
NdeII GATC 3 cut(s) 717, 918, 1030
NlaIII CATG 6 cut(s) 71, 162, 316, 575, 665, 777
NlaIV GGNNCC 1 cut(s) 1140
NmuCI GTSAC 3 cut(s) 634, 709, 890
NsiI ATGCAT 1 cut(s) 160
NspI RCATGY 2 cut(s) 162, 316
NspV TTCGAA 1 cut(s) 426
PceI AGGCCT 1 cut(s) 134
PfeI GAWTC 3 cut(s) 534, 765, 782
PflMI CCANNNNNTGG 2 cut(s) 147, 662
PleI GAGTC 1 cut(s) 611
PpsI GAGTC 1 cut(s) 611
PpuMI RGGWCCY 1 cut(s) 210
PshBI ATTAAT 1 cut(s) 414
Psp5II RGGWCCY 1 cut(s) 210
Psp6I CCWGG 3 cut(s) 112, 655, 989
PspGI CCWGG 3 cut(s) 112, 655, 989
PspN4I GGNNCC 1 cut(s) 1140
PspPI GGNCC 4 cut(s) 210, 653, 1055, 1111
PspPPI RGGWCCY 1 cut(s) 210
PstNI CAGNNNCTG 3 cut(s) 263, 509, 638
RsaI GTAC 3 cut(s) 305, 872, 988
RsaNI GTAC 3 cut(s) 304, 871, 987
RseI CAYNNNNRTG 2 cut(s) 72, 311
SaqAI TTAA 7 cut(s) 14, 189, 414, 468, 726, 837, 915
Sau3AI GATC 3 cut(s) 717, 918, 1030
Sau96I GGNCC 4 cut(s) 210, 653, 1055, 1111
SchI GAGTC 1 cut(s) 611
ScrFI CCNGG 4 cut(s) 114, 657, 715, 991
SduI GDGCHC 2 cut(s) 358, 953
SfaNI GCATC 4 cut(s) 59, 145, 173, 216
SfuI TTCGAA 1 cut(s) 426
SinI GGWCC 1 cut(s) 210
SmiMI CAYNNNNRTG 2 cut(s) 72, 311
SpeI ACTAGT 1 cut(s) 554
Sse9I AATT 5 cut(s) 11, 394, 428, 866, 1092
SseBI AGGCCT 1 cut(s) 134
SsiI CCGC 2 cut(s) 175, 421
SspMI CTAG 4 cut(s) 72, 254, 555, 795
StuI AGGCCT 1 cut(s) 134
StyD4I CCNGG 4 cut(s) 112, 655, 713, 989
StyI CCWWGG 7 cut(s) 135, 141, 349, 661, 682, 1051, 1134
TaaI ACNGT 5 cut(s) 104, 599, 634, 1002, 1043
TaiI ACGT 2 cut(s) 87, 1104
TaqI TCGA 2 cut(s) 235, 426
TasI AATT 5 cut(s) 11, 394, 428, 866, 1092
TatI WGTACW 2 cut(s) 303, 870
TfiI GAWTC 3 cut(s) 534, 765, 782
Tru1I TTAA 7 cut(s) 14, 189, 414, 468, 726, 837, 915
Tru9I TTAA 7 cut(s) 14, 189, 414, 468, 726, 837, 915
TscAI CASTG 3 cut(s) 109, 639, 805
TseFI GTSAC 3 cut(s) 634, 709, 890
Tsp45I GTSAC 3 cut(s) 634, 709, 890
TspGWI ACGGA 1 cut(s) 894
TspRI CASTG 3 cut(s) 109, 639, 805
Van91I CCANNNNNTGG 2 cut(s) 147, 662
VpaK11BI GGWCC 1 cut(s) 210
VspI ATTAAT 1 cut(s) 414
XapI RAATTY 1 cut(s) 428
XceI RCATGY 2 cut(s) 162, 316
XspI CTAG 4 cut(s) 72, 254, 555, 795
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.