Prupe.1G044900_v2.0.a1

Exopolygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000434
Physical Location & Seq
Forward (+)
3212365 .. 3213561
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G044900.1

Sequence Viewer

Length: 1146 bp
ATGGCTCATAAATTGAATAGCATGGCAATGATTTTGTTCTTATTGTTAGCATCTACAGCTAAAGCTGAGCCAGGTGTCTTTGATGTCACAACTGCAACATATGGTGTAAAACCCGGCCCTGATATTACTCAGGCTTTGGCCAAGGCTTGGAATGATGCATGTGCATCGCCATCCGCGAGTATAGTTGTTGTTCTGAGCGGGACATACAAGTTAAGAGAAGCAAGTTTCAAAGGCCCTTGCAAGGCTCCCATTGAGATTCGAGTTCAAGGCATATTGCACGCTCCCACAGATGGCAGCAGACCGACCAAAAAGGATACTTGGGTTGGTTTTGAGCACGTTAACATGCTAAGCTTATCAGGTGGTGGAACTTTTGACGGCCAAGGAGCACTTTCTTGGAGTAAAAATGACTGCAACAAAAACAAAAATTGCAAATCTAATGCTATTAATCTCAGGTTCAATATCACCAATTCAACAGTTCAAGACATAATAACTTCACTTAACAGCAAAAATGTCCACATGAATGTTTTTGGGTGCAAAAATGTTACATTCCAACATGTTAACATCACAGCACCCGGAGAAAGCGTAAACACAGATGGAATCCATATCGGGCATTCAACGGCGATCAACATTACTGATGCAAATATTGGAACTGGGGATGACTGTGTTTCTATTGGTCATGGCAGCAAGGAAATCACAGTGACCAAAGTTACTTGTGGACCAGGCCATGGCATAAGCATAGGAAGCCTTGGAAAGTATCTGAATGAAGAACCTGTTGTTGGAATCAGAGTTAACAACTGCACCCTGAGAAATACACAGAATGGCCTGAGAATCAAGACATGGCCTGCTTCTCCTTCAGCTAGTACTGCCTCGGCTATACACTTTGAGGACATTATCATGGTTAATGTTGGTAACCCTGTCCTCATAGACCAAAAATACTGCCCGTGGAATCAGTGTAAAAAAAAGTTCCATCGAGAGTTAAGATCAGCAATATTGTATGTAGCAGTTGCATACCATGTGGCAGACATTGATCTCACCTACAATGGAAAGAAAGGCCCTCTTACCTTTCAATGTTCTAATGTCAAGCCCACCATTACTCGCGTGACAAAAGCTCTCGCTTGTGCTACCTCTGCTGGATTAAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

382

Amino Acids

40.75

Weight (kDa)

9.18

Isoelectric Point (pI)

30.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07820 AT3G07830 AT3G07840 AT5G48140
fragaria_vesca FvH4_1g26811 FvH4_2g02350 FvH4_6g41380 FvH4_6g41380 FvH4_6g41380 FvH4_6g41430 FvH4_6g41740 FvH4_6g43060 FvH4_7g02910
malus_domestica MD00G1117700.v1.1 MD00G1117800.v1.1 MD00G1117900.v1.1 MD09G1120000.v1.1 MD09G1120100.v1.1 MD09G1120200.v1.1 MD09G1120300.v1.1 MD12G1142000.v1.1 MD13G1218300.v1.1 MD13G1220100.v1.1 MD13G1220200.v1.1 MD16G1223300.v1.1 MD16G1223500.v1.1 MD16G1223600.v1.1 MD17G1110800.v1.1
prunus_persica Prupe.1G044900_v2.0.a1 Prupe.1G045000_v2.0.a1 Prupe.1G167700_v2.0.a1 Prupe.2G005600_v2.0.a1 Prupe.2G005700_v2.0.a1 Prupe.2G008600_v2.0.a1 Prupe.2G009200_v2.0.a1 Prupe.2G009300_v2.0.a1 Prupe.2G009400_v2.0.a1 Prupe.3G109100_v2.0.a1 Prupe.3G109200_v2.0.a1 Prupe.3G109400_v2.0.a1 Prupe.3G109500_v2.0.a1 Prupe.3G109700_v2.0.a1 Prupe.3G203300_v2.0.a1 Prupe.3G203600_v2.0.a1 Prupe.3G203900_v2.0.a1 Prupe.3G204000_v2.0.a1 Prupe.3G204100_v2.0.a1 Prupe.3G204200_v2.0.a1
pyrus_communis pycom09g04480 pycom09g04490 pycom09g04500 pycom12g13680
rosa_chinensis RchiOBHm_Chr1g0323871 RchiOBHm_Chr2g0156921 RchiOBHm_Chr2g0159061 RchiOBHm_Chr6g0246271 RchiOBHm_Chr6g0246281
rosa_laevigata RLG00000015266 RLG00000020954 RLG00000021134 RLG00000030246 RLG00000030250 RLG00000030295
rosa_multiflora Rmu_co8098394.1_g000001 Rmu_co8404671.1_g000001 Rmu_sc0000507.1_g000021 Rmu_sc0001066.1_g000011 Rmu_sc0001066.1_g000015 Rmu_sc0009451.1_g000001 Rmu_ssc0000408.1_g000005
rosa_roxburghii Rroxscaffold_2G00090810 Rroxscaffold_2G00092580 Rroxscaffold_4G00326280 Rroxscaffold_7G00214720
rosa_rugosa Rorug01G0040400 Rorug02G0457200 Rorug05G0520000
rosa_samantha Rh1AG057700 Rh1BG048800 Rh1CG059100 Rh1DG063000 Rh2AG522900 Rh2BG536200 Rh2BG553200 Rh2CG507800 Rh2DG545200 Rh6AG034100 Rh6BG029300 Rh6DG028700
rosa_wichuraiana Rw0G023110 Rw1G004930 Rw2G043170 Rw2G044730 Rw6G002760 Rw6G002920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 147, 725
AccBSI CCGCTC 1 cut(s) 198
AccII CGCG 2 cut(s) 176, 1098
AciI CCGC 2 cut(s) 174, 198
AcoI YGGCCR 2 cut(s) 138, 376
AcuI CTGAAG 1 cut(s) 837
AfaI GTAC 1 cut(s) 862
AfiI CCNNNNNNNGG 5 cut(s) 147, 241, 290, 725, 776
AflIII ACRYGT 1 cut(s) 553
AgsI TTSAA 8 cut(s) 16, 229, 266, 457, 471, 479, 615, 1067
AjnI CCWGG 2 cut(s) 70, 718
AjuI GAANNNNNNNTTGG 2 cut(s) 759, 791
AluBI AGCT 5 cut(s) 59, 65, 351, 857, 1109
AluI AGCT 5 cut(s) 59, 65, 351, 857, 1109
Alw21I GWGCWC 2 cut(s) 336, 388
AoxI GGCC 8 cut(s) 115, 138, 232, 376, 721, 820, 839, 1051
ApeKI GCWGC 2 cut(s) 294, 681
AseI ATTAAT 1 cut(s) 444
AspS9I GGNCC 4 cut(s) 116, 233, 716, 1052
AsuC2I CCSGG 2 cut(s) 114, 573
AsuHPI GGTGA 2 cut(s) 454, 1024
AvaII GGWCC 1 cut(s) 716
BaeI ACNNNNGTAYC 2 cut(s) 306, 339
BalI TGGCCA 1 cut(s) 140
Bbv12I GWGCWC 2 cut(s) 336, 388
BbvI GCAGC 2 cut(s) 306, 693
BccI CCATC 4 cut(s) 178, 284, 587, 975
BceAI ACGGC 2 cut(s) 391, 633
BcgI CGANNNNNNTGC 2 cut(s) 147, 181
BciT130I CCWGG 2 cut(s) 72, 720
BciVI GTATCC 1 cut(s) 307
BcnI CCSGG 2 cut(s) 114, 573
BfaI CTAG 1 cut(s) 858
BfmI CTRYAG 1 cut(s) 54
BfuI GTATCC 1 cut(s) 307
BisI GCNGC 2 cut(s) 295, 682
BlpI GCTNAGC 2 cut(s) 66, 347
BlsI GCNGC 2 cut(s) 296, 683
BmcAI AGTACT 1 cut(s) 862
Bme1390I CCNGG 4 cut(s) 72, 114, 573, 720
Bme18I GGWCC 1 cut(s) 716
BmgT120I GGNCC 4 cut(s) 116, 233, 716, 1052
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 4 cut(s) 72, 114, 573, 720
BmrI ACTGGG 1 cut(s) 660
BmsI GCATC 4 cut(s) 59, 145, 173, 625
BmuI ACTGGG 1 cut(s) 660
Bpu1102I GCTNAGC 2 cut(s) 66, 347
BpuMI CCSGG 2 cut(s) 114, 573
BsaJI CCNNGG 6 cut(s) 141, 379, 724, 745, 867, 941
BsaXI ACNNNNNCTCC 2 cut(s) 567, 597
Bsc4I CCNNNNNNNGG 5 cut(s) 147, 241, 290, 725, 776
Bse1I ACTGG 1 cut(s) 655
Bse3DI GCAATG 1 cut(s) 33
BseBI CCWGG 2 cut(s) 72, 720
BseDI CCNNGG 6 cut(s) 141, 379, 724, 745, 867, 941
BseGI GGATG 2 cut(s) 170, 661
BseLI CCNNNNNNNGG 5 cut(s) 147, 241, 290, 725, 776
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 6 cut(s) 57, 143, 185, 463, 794, 815
BseNI ACTGG 1 cut(s) 655
BseXI GCAGC 2 cut(s) 306, 693
BsgI GTGCAG 1 cut(s) 781
Bsh1236I CGCG 2 cut(s) 176, 1098
BshFI GGCC 8 cut(s) 117, 140, 234, 378, 723, 822, 841, 1053
BsiHKAI GWGCWC 2 cut(s) 336, 388
BsiSI CCGG 2 cut(s) 114, 573
BslFI GGGAC 1 cut(s) 214
BslI CCNNNNNNNGG 5 cut(s) 147, 241, 290, 725, 776
BsmFI GGGAC 1 cut(s) 214
BsmI GAATGC 1 cut(s) 610
BsnI GGCC 8 cut(s) 117, 140, 234, 378, 723, 822, 841, 1053
Bsp1286I GDGCHC 2 cut(s) 336, 388
Bsp143I GATC 3 cut(s) 621, 980, 1027
Bsp1720I GCTNAGC 2 cut(s) 66, 347
Bsp19I CCATGG 1 cut(s) 724
BspACI CCGC 2 cut(s) 174, 198
BspANI GGCC 8 cut(s) 117, 140, 234, 378, 723, 822, 841, 1053
BspCNI CTCAG 6 cut(s) 58, 142, 186, 462, 795, 816
BspFNI CGCG 2 cut(s) 176, 1098
BspLI GGNNCC 1 cut(s) 246
BsrBI CCGCTC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 33
BsrI ACTGG 1 cut(s) 655
BssECI CCNNGG 6 cut(s) 141, 379, 724, 745, 867, 941
BssMI GATC 3 cut(s) 621, 980, 1027
BssT1I CCWWGG 4 cut(s) 141, 379, 724, 745
Bst2UI CCWGG 2 cut(s) 72, 720
Bst4CI ACNGT 3 cut(s) 475, 662, 697
BstC8I GCNNGC 2 cut(s) 279, 843
BstDEI CTNAG 7 cut(s) 66, 129, 194, 347, 449, 803, 824
BstDSI CCRYGG 2 cut(s) 724, 941
BstEII GGTNACC 1 cut(s) 908
BstF5I GGATG 2 cut(s) 170, 661
BstFNI CGCG 2 cut(s) 176, 1098
BstKTI GATC 3 cut(s) 624, 983, 1030
BstMBI GATC 3 cut(s) 621, 980, 1027
BstMWI GCNNNNNNNGC 4 cut(s) 56, 741, 863, 1127
BstNI CCWGG 2 cut(s) 72, 720
BstNSI RCATGY 3 cut(s) 162, 346, 557
BstPI GGTNACC 1 cut(s) 908
BstSCI CCNGG 4 cut(s) 70, 112, 571, 718
BstSFI CTRYAG 1 cut(s) 54
BstUI CGCG 2 cut(s) 176, 1098
BstV1I GCAGC 2 cut(s) 306, 693
BsuI GTATCC 1 cut(s) 307
BsuRI GGCC 8 cut(s) 117, 140, 234, 378, 723, 822, 841, 1053
BtgI CCRYGG 2 cut(s) 724, 941
BtgZI GCGATG 1 cut(s) 150
BtsCI GGATG 2 cut(s) 170, 661
BtsIMutI CAGTG 2 cut(s) 702, 956
Cac8I GCNNGC 2 cut(s) 279, 843
Cfr13I GGNCC 4 cut(s) 116, 233, 716, 1052
Csp6I GTAC 1 cut(s) 861
CviQI GTAC 1 cut(s) 861
DdeI CTNAG 7 cut(s) 66, 129, 194, 347, 449, 803, 824
DpnI GATC 3 cut(s) 623, 982, 1029
DpnII GATC 3 cut(s) 621, 980, 1027
EaeI YGGCCR 2 cut(s) 138, 376
Eco130I CCWWGG 4 cut(s) 141, 379, 724, 745
Eco47I GGWCC 1 cut(s) 716
Eco57I CTGAAG 1 cut(s) 837
Eco91I GGTNACC 1 cut(s) 908
EcoO109I RGGNCCY 2 cut(s) 233, 1052
EcoO65I GGTNACC 1 cut(s) 908
EcoRII CCWGG 2 cut(s) 70, 718
EcoT14I CCWWGG 4 cut(s) 141, 379, 724, 745
EcoT22I ATGCAT 1 cut(s) 160
ErhI CCWWGG 4 cut(s) 141, 379, 724, 745
FalI AAGNNNNNCTT 4 cut(s) 372, 404, 1041, 1073
FaqI GGGAC 1 cut(s) 214
FauI CCCGC 1 cut(s) 191
FauNDI CATATG 1 cut(s) 100
Fnu4HI GCNGC 2 cut(s) 295, 682
FokI GGATG 2 cut(s) 157, 668
Fsp4HI GCNGC 2 cut(s) 295, 682
FspBI CTAG 1 cut(s) 858
GluI GCNGC 2 cut(s) 295, 682
HaeIII GGCC 8 cut(s) 117, 140, 234, 378, 723, 822, 841, 1053
HapII CCGG 2 cut(s) 114, 573
HincII GTYRAC 3 cut(s) 340, 559, 790
HindII GTYRAC 3 cut(s) 340, 559, 790
HindIII AAGCTT 1 cut(s) 349
HinfI GANTC 5 cut(s) 256, 597, 780, 828, 946
HpaI GTTAAC 3 cut(s) 340, 559, 790
HpaII CCGG 2 cut(s) 114, 573
HphI GGTGA 2 cut(s) 454, 1024
Hpy166II GTNNAC 6 cut(s) 340, 514, 559, 586, 716, 790
Hpy188I TCNGA 3 cut(s) 195, 759, 785
Hpy188III TCNNGA 3 cut(s) 479, 832, 971
Hpy8I GTNNAC 6 cut(s) 340, 514, 559, 586, 716, 790
HpyAV CCTTC 1 cut(s) 861
HpyCH4III ACNGT 3 cut(s) 475, 662, 697
HpyCH4IV ACGT 1 cut(s) 336
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 741, 863, 1127
HpyF3I CTNAG 7 cut(s) 66, 129, 194, 347, 449, 803, 824
HpySE526I ACGT 1 cut(s) 336
KspAI GTTAAC 3 cut(s) 340, 559, 790
Kzo9I GATC 3 cut(s) 621, 980, 1027
LmnI GCTCC 3 cut(s) 250, 286, 383
Lsp1109I GCAGC 2 cut(s) 306, 693
LweI GCATC 4 cut(s) 59, 145, 173, 625
MaeI CTAG 1 cut(s) 858
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 6 cut(s) 85, 541, 697, 706, 908, 1099
MalI GATC 3 cut(s) 623, 982, 1029
MbiI CCGCTC 1 cut(s) 198
MboI GATC 3 cut(s) 621, 980, 1027
MboII GAAGA 1 cut(s) 776
MhlI GDGCHC 2 cut(s) 336, 388
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 3 cut(s) 11, 424, 466
MluNI TGGCCA 1 cut(s) 140
MmeI TCCRAC 2 cut(s) 574, 757
MnlI CCTC 5 cut(s) 877, 877, 929, 1065, 1135
Mox20I TGGCCA 1 cut(s) 140
Mph1103I ATGCAT 1 cut(s) 160
MscI TGGCCA 1 cut(s) 140
MseI TTAA 9 cut(s) 212, 339, 444, 498, 558, 789, 900, 977, 1136
MslI CAYNNNNRTG 3 cut(s) 26, 519, 893
Msp20I TGGCCA 1 cut(s) 140
MspI CCGG 2 cut(s) 114, 573
MspR9I CCNGG 4 cut(s) 72, 114, 573, 720
Mva1269I GAATGC 1 cut(s) 610
MvaI CCWGG 2 cut(s) 72, 720
MvnI CGCG 2 cut(s) 176, 1098
MwoI GCNNNNNNNGC 4 cut(s) 56, 741, 863, 1127
NciI CCSGG 2 cut(s) 114, 573
NcoI CCATGG 1 cut(s) 724
NdeI CATATG 1 cut(s) 100
NdeII GATC 3 cut(s) 621, 980, 1027
NlaIV GGNNCC 1 cut(s) 246
NmeAIII GCCGAG 1 cut(s) 848
NmuCI GTSAC 3 cut(s) 85, 697, 1099
NsiI ATGCAT 1 cut(s) 160
NspI RCATGY 3 cut(s) 162, 346, 557
PciI ACATGT 1 cut(s) 553
PcsI WCGNNNNNNNCGW 1 cut(s) 173
PctI GAATGC 1 cut(s) 610
PfeI GAWTC 5 cut(s) 256, 597, 780, 828, 946
PflMI CCANNNNNTGG 2 cut(s) 147, 725
PkrI GCNGC 2 cut(s) 296, 683
PscI ACATGT 1 cut(s) 553
PshBI ATTAAT 1 cut(s) 444
Psp6I CCWGG 2 cut(s) 70, 718
PspEI GGTNACC 1 cut(s) 908
PspGI CCWGG 2 cut(s) 70, 718
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 4 cut(s) 116, 233, 716, 1052
RsaI GTAC 1 cut(s) 862
RsaNI GTAC 1 cut(s) 861
RseI CAYNNNNRTG 3 cut(s) 26, 519, 893
SaqAI TTAA 9 cut(s) 212, 339, 444, 498, 558, 789, 900, 977, 1136
SatI GCNGC 2 cut(s) 295, 682
Sau3AI GATC 3 cut(s) 621, 980, 1027
Sau96I GGNCC 4 cut(s) 116, 233, 716, 1052
ScaI AGTACT 1 cut(s) 862
ScrFI CCNGG 4 cut(s) 72, 114, 573, 720
SduI GDGCHC 2 cut(s) 336, 388
SfaNI GCATC 4 cut(s) 59, 145, 173, 625
SfcI CTRYAG 1 cut(s) 54
SinI GGWCC 1 cut(s) 716
SmiMI CAYNNNNRTG 3 cut(s) 26, 519, 893
Sse9I AATT 3 cut(s) 11, 424, 466
SsiI CCGC 2 cut(s) 174, 198
SspI AATATT 2 cut(s) 643, 990
SspMI CTAG 1 cut(s) 858
StyD4I CCNGG 4 cut(s) 70, 112, 571, 718
StyI CCWWGG 4 cut(s) 141, 379, 724, 745
TaaI ACNGT 3 cut(s) 475, 662, 697
TaiI ACGT 1 cut(s) 339
TaqI TCGA 2 cut(s) 259, 970
TaqII GACCGA 1 cut(s) 316
TasI AATT 3 cut(s) 11, 424, 466
TatI WGTACW 1 cut(s) 860
TfiI GAWTC 5 cut(s) 256, 597, 780, 828, 946
Tru1I TTAA 9 cut(s) 212, 339, 444, 498, 558, 789, 900, 977, 1136
Tru9I TTAA 9 cut(s) 212, 339, 444, 498, 558, 789, 900, 977, 1136
TscAI CASTG 2 cut(s) 702, 956
TseFI GTSAC 3 cut(s) 85, 697, 1099
TseI GCWGC 2 cut(s) 294, 681
Tsp45I GTSAC 3 cut(s) 85, 697, 1099
TspDTI ATGAA 2 cut(s) 533, 777
TspRI CASTG 2 cut(s) 702, 956
Van91I CCANNNNNTGG 2 cut(s) 147, 725
VpaK11BI GGWCC 1 cut(s) 716
VspI ATTAAT 1 cut(s) 444
XceI RCATGY 3 cut(s) 162, 346, 557
XspI CTAG 1 cut(s) 858
ZrmI AGTACT 1 cut(s) 862
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.