Prupe.3G109700_v2.0.a1

Exopolygalacturonase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000434
Physical Location & Seq
Reverse (-)
8890506 .. 8891988
1483 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G109700.1

Sequence Viewer

Length: 1215 bp
ATGGCTGTGAAATTAAGTTTCTTGGCAATGCTTTTGTGCTTATTGTTAGCATCTACACCTAAGGCTCATGCTAGTGTGTTTGACGTGACAAGTGCAACATACGGTGCAAAGCCTGGCTCTGATGTCAGTACGGCCTTGGCCAAGGCTTGGAGTGATGCATGTGCATCGCCATCCGCGAGTAAAGTTGTCATTCCGAGCGGGACATACAAGTTAAAAGAAGCAACTTTCAGAGGCCCCTGTAAGGCTCCTATTGAGATGCAAGTTCAAGGCACATTGCAGGCTCCAGCAGACGCTGGCCAACTCACAAGACTGGATACTTGGGTTGGTTTTCAGTACATTGACATGCTCACCTTATCAGGTGGTGGGACTTTTGATGGCCAAGGAGCACTTTCTTGGAATCAAAATGACTGCCACAAAAACAAAAATTGCAAACCTCCTCCCGTTAATCTGCGGTTTGAATTCCTCACAAATTCCAAAGTTCAGGACATAACTTCACTTAACAGCAAATTTTTCCACATCCATGTTTTCCGGTGCAACCATACTACATTTCAACAGCTTACCATCACAGCACCTGACGAGAGCAGAAACACAGATGGAATCCATATCGGGGCTTCGACTGGTATCAACATTACTCATTCAAAGATTGGAACTGGGGATGACTGTATTTCTATTGGTGATGACTCCCACAAAATCACAGTGACTGGTGTTACTTGTGGGCCAGGCCATGGAATAAGCATTGGAAGCCTTGGAAAATATAAGGAAGAAAAGGATGTGACCGGGATCATAGTTAAGAACTGCACCCTGACTAATACGGAGAACGGTGTGAGAATCAAAACATTTCCAGATTCTCCTTCGCCTAGCTCTGCCTCGGGTATACACTATGAGGATATTATCATGGTTAATGTCAGTAACCCTATCCTCATAGACCAATTGTACTGCCCATATACTAAGTGTGAACAAAAGCCTCCGTCAAAAGTTAAGATCAACAATGTCAGCTTCAAGAACATTAAGGGCTCATCTTTCACTCCACTTGCAGTCAAGCTTGTATGTACCACGGGCAAACCGTGTGAGAATGTGGAGTTGACTGACATTGATCTCACCTACGGTGGAGACAAAGGCCCTCTTACCTCTGTGTGTTCTAATGTCAAGCCCGCAATTACTGGCGTGACAAAGGCTCTTGGTTGTGCTACATCGTCCTTGGCACCTCTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko00040 ko01100 map00040 map01100
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

405

Amino Acids

42.9

Weight (kDa)

8.28

Isoelectric Point (pI)

30.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000434)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07820 AT3G07830 AT3G07840 AT5G48140
fragaria_vesca FvH4_1g26811 FvH4_2g02350 FvH4_6g41380 FvH4_6g41380 FvH4_6g41380 FvH4_6g41430 FvH4_6g41740 FvH4_6g43060 FvH4_7g02910
malus_domestica MD00G1117700.v1.1 MD00G1117800.v1.1 MD00G1117900.v1.1 MD09G1120000.v1.1 MD09G1120100.v1.1 MD09G1120200.v1.1 MD09G1120300.v1.1 MD12G1142000.v1.1 MD13G1218300.v1.1 MD13G1220100.v1.1 MD13G1220200.v1.1 MD16G1223300.v1.1 MD16G1223500.v1.1 MD16G1223600.v1.1 MD17G1110800.v1.1
prunus_persica Prupe.1G044900_v2.0.a1 Prupe.1G045000_v2.0.a1 Prupe.1G167700_v2.0.a1 Prupe.2G005600_v2.0.a1 Prupe.2G005700_v2.0.a1 Prupe.2G008600_v2.0.a1 Prupe.2G009200_v2.0.a1 Prupe.2G009300_v2.0.a1 Prupe.2G009400_v2.0.a1 Prupe.3G109100_v2.0.a1 Prupe.3G109200_v2.0.a1 Prupe.3G109400_v2.0.a1 Prupe.3G109500_v2.0.a1 Prupe.3G109700_v2.0.a1 Prupe.3G203300_v2.0.a1 Prupe.3G203600_v2.0.a1 Prupe.3G203900_v2.0.a1 Prupe.3G204000_v2.0.a1 Prupe.3G204100_v2.0.a1 Prupe.3G204200_v2.0.a1
pyrus_communis pycom09g04480 pycom09g04490 pycom09g04500 pycom12g13680
rosa_chinensis RchiOBHm_Chr1g0323871 RchiOBHm_Chr2g0156921 RchiOBHm_Chr2g0159061 RchiOBHm_Chr6g0246271 RchiOBHm_Chr6g0246281
rosa_laevigata RLG00000015266 RLG00000020954 RLG00000021134 RLG00000030246 RLG00000030250 RLG00000030295
rosa_multiflora Rmu_co8098394.1_g000001 Rmu_co8404671.1_g000001 Rmu_sc0000507.1_g000021 Rmu_sc0001066.1_g000011 Rmu_sc0001066.1_g000015 Rmu_sc0009451.1_g000001 Rmu_ssc0000408.1_g000005
rosa_roxburghii Rroxscaffold_2G00090810 Rroxscaffold_2G00092580 Rroxscaffold_4G00326280 Rroxscaffold_7G00214720
rosa_rugosa Rorug01G0040400 Rorug02G0457200 Rorug05G0520000
rosa_samantha Rh1AG057700 Rh1BG048800 Rh1CG059100 Rh1DG063000 Rh2AG522900 Rh2BG536200 Rh2BG553200 Rh2CG507800 Rh2DG545200 Rh6AG034100 Rh6BG029300 Rh6DG028700
rosa_wichuraiana Rw0G023110 Rw1G004930 Rw2G043170 Rw2G044730 Rw6G002760 Rw6G002920

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1201
AccB7I CCANNNNNTGG 2 cut(s) 147, 725
AccBSI CCGCTC 1 cut(s) 198
AccI GTMKAC 1 cut(s) 874
AccII CGCG 1 cut(s) 176
AciI CCGC 4 cut(s) 174, 198, 451, 1152
AclWI GGATC 1 cut(s) 788
AcoI YGGCCR 3 cut(s) 138, 295, 376
AcsI RAATTY 3 cut(s) 458, 469, 506
AfaI GTAC 4 cut(s) 130, 335, 935, 1051
AfiI CCNNNNNNNGG 4 cut(s) 147, 241, 607, 725
AgsI TTSAA 5 cut(s) 266, 458, 551, 639, 1000
AjiI CACGTC 1 cut(s) 85
AjnI CCWGG 2 cut(s) 112, 718
AluBI AGCT 4 cut(s) 556, 861, 996, 1042
AluI AGCT 4 cut(s) 556, 861, 996, 1042
Alw21I GWGCWC 1 cut(s) 388
Alw26I GTCTC 1 cut(s) 1104
AlwI GGATC 1 cut(s) 788
AlwNI CAGNNNCTG 3 cut(s) 293, 572, 701
Ama87I CYCGRG 1 cut(s) 868
AoxI GGCC 8 cut(s) 132, 138, 232, 295, 376, 716, 721, 1117
ApoI RAATTY 3 cut(s) 458, 469, 506
AspS9I GGNCC 3 cut(s) 233, 716, 1118
AsuC2I CCSGG 1 cut(s) 778
AsuHPI GGTGA 3 cut(s) 340, 686, 1090
AvaI CYCGRG 1 cut(s) 868
AxyI CCTNAGG 1 cut(s) 60
BaeI ACNNNNGTAYC 2 cut(s) 306, 339
BalI TGGCCA 3 cut(s) 140, 297, 378
BanI GGYRCC 1 cut(s) 1201
BanII GRGCYC 1 cut(s) 1016
Bbv12I GWGCWC 1 cut(s) 388
BccI CCATC 4 cut(s) 178, 368, 569, 587
BceAI ACGGC 1 cut(s) 147
BcgI CGANNNNNNTGC 2 cut(s) 147, 181
BciT130I CCWGG 2 cut(s) 114, 720
BciVI GTATCC 1 cut(s) 307
BcnI CCSGG 1 cut(s) 778
BcoDI GTCTC 1 cut(s) 1104
BfaI CTAG 2 cut(s) 72, 858
BfuI GTATCC 1 cut(s) 307
Bme1390I CCNGG 3 cut(s) 114, 720, 778
BmeT110I CYCGRG 1 cut(s) 868
BmgBI CACGTC 1 cut(s) 85
BmgT120I GGNCC 3 cut(s) 233, 716, 1118
BmiI GGNNCC 4 cut(s) 235, 246, 282, 1203
BmrFI CCNGG 3 cut(s) 114, 720, 778
BmrI ACTGGG 1 cut(s) 660
BmsI GCATC 4 cut(s) 59, 145, 173, 246
BmuI ACTGGG 1 cut(s) 660
BpmI CTGGAG 1 cut(s) 267
BpuMI CCSGG 1 cut(s) 778
BsaJI CCNNGG 8 cut(s) 135, 141, 379, 724, 745, 867, 1053, 1197
BsaWI WCCGGW 1 cut(s) 528
Bsc4I CCNNNNNNNGG 4 cut(s) 147, 241, 607, 725
Bse1I ACTGG 5 cut(s) 315, 622, 655, 706, 1165
Bse21I CCTNAGG 1 cut(s) 60
Bse3DI GCAATG 2 cut(s) 33, 272
BseBI CCWGG 2 cut(s) 114, 720
BseDI CCNNGG 8 cut(s) 135, 141, 379, 724, 745, 867, 1053, 1197
BseGI GGATG 4 cut(s) 170, 516, 661, 775
BseLI CCNNNNNNNGG 4 cut(s) 147, 241, 607, 725
BseMI GCAATG 2 cut(s) 33, 272
BseNI ACTGG 5 cut(s) 315, 622, 655, 706, 1165
BseRI GAGGAG 1 cut(s) 426
BsgI GTGCAG 1 cut(s) 781
Bsh1236I CGCG 1 cut(s) 176
BshFI GGCC 8 cut(s) 134, 140, 234, 297, 378, 718, 723, 1119
BshNI GGYRCC 1 cut(s) 1201
BsiHKAI GWGCWC 1 cut(s) 388
BsiHKCI CYCGRG 1 cut(s) 868
BsiSI CCGG 2 cut(s) 529, 777
BslFI GGGAC 2 cut(s) 214, 379
BslI CCNNNNNNNGG 4 cut(s) 147, 241, 607, 725
BsmAI GTCTC 1 cut(s) 1104
BsmFI GGGAC 2 cut(s) 214, 379
BsnI GGCC 8 cut(s) 134, 140, 234, 297, 378, 718, 723, 1119
BsoBI CYCGRG 1 cut(s) 868
Bsp1286I GDGCHC 2 cut(s) 388, 1016
Bsp143I GATC 3 cut(s) 780, 981, 1093
Bsp19I CCATGG 1 cut(s) 724
BspACI CCGC 4 cut(s) 174, 198, 451, 1152
BspANI GGCC 8 cut(s) 134, 140, 234, 297, 378, 718, 723, 1119
BspFNI CGCG 1 cut(s) 176
BspLI GGNNCC 4 cut(s) 235, 246, 282, 1203
BspPI GGATC 1 cut(s) 788
BspT107I GGYRCC 1 cut(s) 1201
BsrBI CCGCTC 1 cut(s) 198
BsrDI GCAATG 2 cut(s) 33, 272
BsrI ACTGG 5 cut(s) 315, 622, 655, 706, 1165
BssECI CCNNGG 8 cut(s) 135, 141, 379, 724, 745, 867, 1053, 1197
BssMI GATC 3 cut(s) 780, 981, 1093
BssNAI GTATAC 1 cut(s) 875
BssT1I CCWWGG 6 cut(s) 135, 141, 379, 724, 745, 1197
Bst1107I GTATAC 1 cut(s) 875
Bst2UI CCWGG 2 cut(s) 114, 720
Bst4CI ACNGT 6 cut(s) 104, 662, 697, 821, 1065, 1106
Bst6I CTCTTC 1 cut(s) 1212
BstC8I GCNNGC 3 cut(s) 279, 295, 1152
BstDEI CTNAG 2 cut(s) 60, 948
BstDSI CCRYGG 2 cut(s) 724, 1053
BstF5I GGATG 4 cut(s) 170, 516, 661, 775
BstFNI CGCG 1 cut(s) 176
BstKTI GATC 3 cut(s) 783, 984, 1096
BstMAI GTCTC 1 cut(s) 1104
BstMBI GATC 3 cut(s) 780, 981, 1093
BstMWI GCNNNNNNNGC 1 cut(s) 741
BstNI CCWGG 2 cut(s) 114, 720
BstNSI RCATGY 2 cut(s) 162, 346
BstSCI CCNGG 3 cut(s) 112, 718, 776
BstUI CGCG 1 cut(s) 176
BstZ17I GTATAC 1 cut(s) 875
Bsu36I CCTNAGG 1 cut(s) 60
BsuI GTATCC 1 cut(s) 307
BsuRI GGCC 8 cut(s) 134, 140, 234, 297, 378, 718, 723, 1119
BtgI CCRYGG 2 cut(s) 724, 1053
BtgZI GCGATG 1 cut(s) 150
BtrI CACGTC 1 cut(s) 85
BtsCI GGATG 4 cut(s) 170, 516, 661, 775
BtsIMutI CAGTG 1 cut(s) 702
Cac8I GCNNGC 3 cut(s) 279, 295, 1152
CaiI CAGNNNCTG 3 cut(s) 293, 572, 701
Cfr13I GGNCC 3 cut(s) 233, 716, 1118
CseI GACGC 1 cut(s) 299
Csp6I GTAC 4 cut(s) 129, 334, 934, 1050
CviAII CATG 6 cut(s) 68, 159, 343, 521, 725, 895
CviQI GTAC 4 cut(s) 129, 334, 934, 1050
DdeI CTNAG 2 cut(s) 60, 948
DpnI GATC 3 cut(s) 782, 983, 1095
DpnII GATC 3 cut(s) 780, 981, 1093
EaeI YGGCCR 3 cut(s) 138, 295, 376
Eam1104I CTCTTC 1 cut(s) 1212
EarI CTCTTC 1 cut(s) 1212
Eco130I CCWWGG 6 cut(s) 135, 141, 379, 724, 745, 1197
Eco24I GRGCYC 1 cut(s) 1016
Eco81I CCTNAGG 1 cut(s) 60
Eco88I CYCGRG 1 cut(s) 868
EcoO109I RGGNCCY 2 cut(s) 233, 1118
EcoRI GAATTC 1 cut(s) 458
EcoRII CCWGG 2 cut(s) 112, 718
EcoT14I CCWWGG 6 cut(s) 135, 141, 379, 724, 745, 1197
EcoT22I ATGCAT 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 1016
ErhI CCWWGG 6 cut(s) 135, 141, 379, 724, 745, 1197
FaeI CATG 6 cut(s) 71, 162, 346, 524, 728, 898
FalI AAGNNNNNCTT 4 cut(s) 372, 404, 1107, 1139
FaqI GGGAC 2 cut(s) 214, 379
FatI CATG 6 cut(s) 67, 158, 342, 520, 724, 894
FauI CCCGC 2 cut(s) 191, 1159
FblI GTMKAC 1 cut(s) 874
FokI GGATG 4 cut(s) 157, 503, 668, 782
FriOI GRGCYC 1 cut(s) 1016
FspBI CTAG 2 cut(s) 72, 858
GsuI CTGGAG 1 cut(s) 267
HaeIII GGCC 8 cut(s) 134, 140, 234, 297, 378, 718, 723, 1119
HapII CCGG 2 cut(s) 529, 777
HgaI GACGC 1 cut(s) 299
Hin1II CATG 6 cut(s) 71, 162, 346, 524, 728, 898
HincII GTYRAC 1 cut(s) 1083
HindII GTYRAC 1 cut(s) 1083
HindIII AAGCTT 1 cut(s) 1040
HinfI GANTC 5 cut(s) 397, 597, 680, 828, 845
HpaII CCGG 2 cut(s) 529, 777
HphI GGTGA 3 cut(s) 340, 686, 1090
Hpy166II GTNNAC 3 cut(s) 875, 956, 1083
Hpy188I TCNGA 3 cut(s) 121, 195, 230
Hpy188III TCNNGA 3 cut(s) 482, 842, 1000
Hpy8I GTNNAC 3 cut(s) 875, 956, 1083
HpyAV CCTTC 1 cut(s) 861
HpyCH4III ACNGT 6 cut(s) 104, 662, 697, 821, 1065, 1106
HpyCH4IV ACGT 1 cut(s) 84
HpyF10VI GCNNNNNNNGC 1 cut(s) 741
HpyF3I CTNAG 2 cut(s) 60, 948
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 6 cut(s) 71, 162, 346, 524, 728, 898
Kzo9I GATC 3 cut(s) 780, 981, 1093
LmnI GCTCC 3 cut(s) 250, 286, 383
LweI GCATC 4 cut(s) 59, 145, 173, 246
MaeI CTAG 2 cut(s) 72, 858
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 6 cut(s) 85, 697, 706, 772, 908, 1165
MalI GATC 3 cut(s) 782, 983, 1095
MbiI CCGCTC 1 cut(s) 198
MboI GATC 3 cut(s) 780, 981, 1093
MboII GAAGA 2 cut(s) 773, 1199
MfeI CAATTG 1 cut(s) 929
MhlI GDGCHC 2 cut(s) 388, 1016
MlsI TGGCCA 3 cut(s) 140, 297, 378
MluCI AATT 7 cut(s) 11, 424, 458, 469, 506, 929, 1155
MluNI TGGCCA 3 cut(s) 140, 297, 378
MlyI GAGTC 1 cut(s) 674
Mox20I TGGCCA 3 cut(s) 140, 297, 378
Mph1103I ATGCAT 1 cut(s) 160
MscI TGGCCA 3 cut(s) 140, 297, 378
MseI TTAA 8 cut(s) 14, 212, 444, 498, 789, 900, 978, 1008
MslI CAYNNNNRTG 3 cut(s) 72, 341, 519
Msp20I TGGCCA 3 cut(s) 140, 297, 378
MspI CCGG 2 cut(s) 529, 777
MspR9I CCNGG 3 cut(s) 114, 720, 778
MunI CAATTG 1 cut(s) 929
MvaI CCWGG 2 cut(s) 114, 720
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 1 cut(s) 741
NciI CCSGG 1 cut(s) 778
NcoI CCATGG 1 cut(s) 724
NdeII GATC 3 cut(s) 780, 981, 1093
NlaIII CATG 6 cut(s) 71, 162, 346, 524, 728, 898
NlaIV GGNNCC 4 cut(s) 235, 246, 282, 1203
NmuCI GTSAC 4 cut(s) 85, 697, 772, 1165
NsiI ATGCAT 1 cut(s) 160
NspI RCATGY 2 cut(s) 162, 346
PcsI WCGNNNNNNNCGW 2 cut(s) 173, 1061
PfeI GAWTC 4 cut(s) 397, 597, 828, 845
PflMI CCANNNNNTGG 2 cut(s) 147, 725
PleI GAGTC 1 cut(s) 674
PpsI GAGTC 1 cut(s) 674
Psp6I CCWGG 2 cut(s) 112, 718
PspGI CCWGG 2 cut(s) 112, 718
PspN4I GGNNCC 4 cut(s) 235, 246, 282, 1203
PspPI GGNCC 3 cut(s) 233, 716, 1118
PstNI CAGNNNCTG 3 cut(s) 293, 572, 701
RsaI GTAC 4 cut(s) 130, 335, 935, 1051
RsaNI GTAC 4 cut(s) 129, 334, 934, 1050
RseI CAYNNNNRTG 3 cut(s) 72, 341, 519
SaqAI TTAA 8 cut(s) 14, 212, 444, 498, 789, 900, 978, 1008
Sau3AI GATC 3 cut(s) 780, 981, 1093
Sau96I GGNCC 3 cut(s) 233, 716, 1118
SchI GAGTC 1 cut(s) 674
ScrFI CCNGG 3 cut(s) 114, 720, 778
SduI GDGCHC 2 cut(s) 388, 1016
SfaNI GCATC 4 cut(s) 59, 145, 173, 246
SmiMI CAYNNNNRTG 3 cut(s) 72, 341, 519
Sse9I AATT 7 cut(s) 11, 424, 458, 469, 506, 929, 1155
SsiI CCGC 4 cut(s) 174, 198, 451, 1152
SspMI CTAG 2 cut(s) 72, 858
StyD4I CCNGG 3 cut(s) 112, 718, 776
StyI CCWWGG 6 cut(s) 135, 141, 379, 724, 745, 1197
TaaI ACNGT 6 cut(s) 104, 662, 697, 821, 1065, 1106
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 614
TasI AATT 7 cut(s) 11, 424, 458, 469, 506, 929, 1155
TatI WGTACW 2 cut(s) 333, 933
TfiI GAWTC 4 cut(s) 397, 597, 828, 845
Tru1I TTAA 8 cut(s) 14, 212, 444, 498, 789, 900, 978, 1008
Tru9I TTAA 8 cut(s) 14, 212, 444, 498, 789, 900, 978, 1008
TscAI CASTG 1 cut(s) 702
TseFI GTSAC 4 cut(s) 85, 697, 772, 1165
Tsp45I GTSAC 4 cut(s) 85, 697, 772, 1165
TspGWI ACGGA 2 cut(s) 827, 957
TspRI CASTG 1 cut(s) 702
Van91I CCANNNNNTGG 2 cut(s) 147, 725
XapI RAATTY 3 cut(s) 458, 469, 506
XceI RCATGY 2 cut(s) 162, 346
XmiI GTMKAC 1 cut(s) 874
XspI CTAG 2 cut(s) 72, 858
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.